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Conserved domains on  [gi|156446175|gb|ABU63336|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Lepilemur ankaranensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-62 9.89e-16

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00107:

Pssm-ID: 444937  Cd Length: 98  Bit Score: 64.57  E-value: 9.89e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446175  1 MPSISTNITLAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILFIMNLHYTVSFIMPIL 62
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPII 62
 
Name Accession Description Interval E-value
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-62 9.89e-16

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 64.57  E-value: 9.89e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446175  1 MPSISTNITLAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILFIMNLHYTVSFIMPIL 62
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPII 62
 
Name Accession Description Interval E-value
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-62 9.89e-16

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 64.57  E-value: 9.89e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446175  1 MPSISTNITLAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILFIMNLHYTVSFIMPIL 62
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPII 62
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-62 2.68e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 43.03  E-value: 2.68e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446175  1 MPSISTNITLAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILFIMNLHYTVSFIMPIL 62
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPML 62
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-62 8.85e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 41.76  E-value: 8.85e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156446175  1 MPSISTNITLAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILFIMNLHYTVSFIMPIL 62
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPII 62
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 11-62 1.97e-04

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 35.73  E-value: 1.97e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 156446175 11 AFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILFIMNLHYTVSFIMPIL 62
Cdd:MTH00067 11 AFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMF 62
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 9-62 1.24e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 33.76  E-value: 1.24e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 156446175  9 TLAFTIALTGMLVFRSHLMSSLLCLEGMMLSMFILSILFIMNLHYTVSFIMPIL 62
Cdd:MTH00181  6 ISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLI 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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