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Conserved domains on  [gi|1561966961|gb|QAT97035|]
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cytochrome b, partial (mitochondrion) [Acomys percivali]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-119 3.44e-92

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 270.36  E-value: 3.44e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00100   39 ICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGII 118

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00100  119 LLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 157
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-119 3.44e-92

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 270.36  E-value: 3.44e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00100   39 ICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGII 118

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00100  119 LLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 157
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-119 2.56e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.32  E-value: 2.56e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSY--TFMETWNIG 78
Cdd:cd00284    31 TCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIG 110

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1561966961  79 VILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:cd00284   111 VILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIG 151
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-119 2.87e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 166.12  E-value: 2.87e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFME--TWNIG 78
Cdd:COG1290    48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIG 127

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1561966961  79 VILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:COG1290   128 VLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIG 168
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-119 1.97e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 155.62  E-value: 1.97e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   2 CLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYG--SYTFMETWNIGV 79
Cdd:pfam00033  23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1561966961  80 ILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIG 142
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-119 3.44e-92

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 270.36  E-value: 3.44e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00100   39 ICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGII 118

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00100  119 LLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 157
CYTB MTH00074
cytochrome b; Provisional
 1-119 4.02e-82

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 244.98  E-value: 4.02e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00074   40 VCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVI 119

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00074  120 LLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMG 158
CYTB MTH00156
cytochrome b; Provisional
 1-119 1.02e-81

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 243.15  E-value: 1.02e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00156   29 LCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVI 108

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00156  109 ILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLG 147
CYTB MTH00119
cytochrome b; Provisional
 2-119 1.68e-81

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 243.27  E-value: 1.68e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   2 CLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVIL 81
Cdd:MTH00119   41 CLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVIL 120

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1561966961  82 LFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00119  121 LLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG 158
CYTB MTH00131
cytochrome b; Provisional
 2-119 1.90e-81

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 243.02  E-value: 1.90e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   2 CLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVIL 81
Cdd:MTH00131   40 CLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVL 119

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1561966961  82 LFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00131  120 LLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVG 157
CYTB MTH00191
cytochrome b; Provisional
 1-119 1.04e-78

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 235.58  E-value: 1.04e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00191   36 LCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVI 115

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00191  116 LLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIG 154
CYTB MTH00145
cytochrome b; Provisional
 1-119 6.12e-74

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 224.01  E-value: 6.12e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00145   40 LCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVT 119

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00145  120 LLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVG 158
CYTB MTH00034
cytochrome b; Validated
 2-119 2.09e-73

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 222.66  E-value: 2.09e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   2 CLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVIL 81
Cdd:MTH00034   40 CLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVIL 119

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1561966961  82 LFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00034  120 FLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIG 157
CYTB MTH00016
cytochrome b; Validated
 1-119 1.75e-71

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 217.62  E-value: 1.75e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00016   40 LCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVI 119

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00016  120 LLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIG 158
CYTB MTH00022
cytochrome b; Validated
 1-119 4.75e-63

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 196.08  E-value: 4.75e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00022   38 LCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVV 117

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00022  118 IFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVG 156
CYTB MTH00053
cytochrome b; Provisional
 1-119 8.88e-61

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 190.30  E-value: 8.88e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00053   40 FCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVL 119

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00053  120 IFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVG 158
CYTB MTH00224
cytochrome b; Provisional
 1-119 1.86e-60

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 189.36  E-value: 1.86e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00224   40 LCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVI 119

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00224  120 LFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIG 158
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-119 2.56e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.32  E-value: 2.56e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSY--TFMETWNIG 78
Cdd:cd00284    31 TCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIG 110

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1561966961  79 VILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:cd00284   111 VILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIG 151
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-119 2.87e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 166.12  E-value: 2.87e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFME--TWNIG 78
Cdd:COG1290    48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIG 127

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1561966961  79 VILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:COG1290   128 VLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIG 168
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-119 1.97e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 155.62  E-value: 1.97e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   2 CLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYG--SYTFMETWNIGV 79
Cdd:pfam00033  23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1561966961  80 ILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIG 142
CYTB MTH00033
cytochrome b; Provisional
 1-119 6.12e-48

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 157.41  E-value: 6.12e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVI 80
Cdd:MTH00033   36 LCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVL 115

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1561966961  81 LLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00033  116 IFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVG 154
CYTB MTH00086
cytochrome b; Provisional
 3-119 4.61e-42

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 141.23  E-value: 4.61e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   3 LIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILL 82
Cdd:MTH00086   30 LVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIY 109

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1561966961  83 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00086  110 LLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWG 146
CYTB MTH00046
cytochrome b; Validated
 3-119 7.83e-31

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 112.00  E-value: 7.83e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   3 LIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILL 82
Cdd:MTH00046   32 MVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILY 111

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1561966961  83 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:MTH00046  112 LLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVG 148
PRK03735 PRK03735
cytochrome b6; Provisional
 1-119 3.35e-26

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 97.09  E-value: 3.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFME--TWNIG 78
Cdd:PRK03735   50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1561966961  79 VILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:PRK03735  130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIG 170
petB CHL00070
cytochrome b6
 1-119 9.19e-21

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 82.85  E-value: 9.19e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1561966961   1 VCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFME--TWNIG 78
Cdd:CHL00070   42 TCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTG 121

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1561966961  79 VILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:CHL00070  122 VVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIG 162
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
50-119 1.49e-16

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 70.73  E-value: 1.49e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1561966961  50 SLFFMCLFMHVGRGIYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIG 119
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVG 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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