|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00112 |
PTZ00112 |
origin recognition complex 1 protein; Provisional |
1-1162 |
0e+00 |
|
origin recognition complex 1 protein; Provisional
Pssm-ID: 240274 [Multi-domain] Cd Length: 1164 Bit Score: 1937.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 1 MTPKKKNHKSYESHKICQPRENRETreshhfrkvNKVPNFHSFHLNDSEILSPTKGGIKLDVSKLSILSFSGTPRKEEPK 80
Cdd:PTZ00112 1 MTPKKKIHKSYESHKICQPRENRET---------NKVPNFHNFHLNDNEILSPTKGGIKLDVSKLSILSFENTPRKEEKK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 81 KKQSRIPDYEQIQGNTQDVYIQLNQRSDTPRKNTSRVTTAEKAkNRKEKHALDSSSSSPSSSPSSSSSFFSSPPSSYSCV 160
Cdd:PTZ00112 72 KKNLNLPDYNQIQNNTHDFYIDLNERSKTPIKNNDNVTTPIKA-NKKEKHNLDSSSSSSISSSLTNISFFSSPTSIYSCL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 161 SDSDSSAHSPRVPRERQASHVFLSSDASPRKAE-PRKSLSKQTRVAHTHNYDHMRRSPRNLSTSKSGT---------EKD 230
Cdd:PTZ00112 151 SNSLSSKHSPKVIKENQSTHVNISSDNSPRNKEiSNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTndknkeknkEKD 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 231 SHKKKDVGGGKENKRNSEKGKVGNSHGDVRTLRSATKEKKDEKKV-VSGSRSSVLLKRKSECLSKDSYVYRNLVKRAKTG 309
Cdd:PTZ00112 231 KNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKNvVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTG 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 310 LPRG--GARSGSSESGDDDGSGSSDLGSRRGSGR--PSPRRSSSTQKQTQPQKSSHPQKNNQPQKNNQPLRHTATINKRS 385
Cdd:PTZ00112 311 DPKNiiHRNNGSSNSNNDDTSSSNHLGSNRISNRnpSSPYKKQTTTKHTNNTKNNKYNKTKTTQKFNHPLRHHATINKRS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 386 SMLPMSEQKGRGASEAREQHKEFTSEEVAKLTKDTSIKLVEQDACQYEDGVIYECICINEVQYSIGDDVMVLCEGSGGGS 465
Cdd:PTZ00112 391 SMLPMSEQKGRGASEKSEYIKEFTMEEVAKLTKDTTIKLVEENSCQYEDGVIYESIQINDVEYSIGDDVLIFCTGNGNTY 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 466 SGRSGTTTHHPSKNQLGKTYQLRKGKISSFYQNGESNQVEAEVCIYFDQHDAAYIKELSEKQKSRRSKADFEVFLDEKTR 545
Cdd:PTZ00112 471 NGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQHDAQYIKELEEKQKSRRCKADFEVFLDDDTK 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 546 NFYLLGNIEFKLVDAKMILKKIHVYNEKRLYDEDKTSKQGKDKFLCTHYLKEREERICDLQNSEHWDNLVLGSSDLYYSF 625
Cdd:PTZ00112 551 NFYLLGNIHFKILDAKMILKKIYVYNEKELYDEDKTAKQGKDKFLCTHYLKEREERICFIQNSEHWDNLVLGSSDLYYSF 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 626 SNGKKSNKNKSLKMIIDKLKVGEAGGGRGQSGNAATNPGSSTTSSPSKSPSGSKSPNGSKPPSGNKTPGSNKPPSGnktG 705
Cdd:PTZ00112 631 SNEKKSNKNKSLKLIIEKLKINEQGGQKKNSKKEYMNPAQTTTSSKAKTHSKTKNDHNKSKTSKNKEPSSTSFLQD---V 707
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 706 GKAKTPPNVDLKNFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYIS 785
Cdd:PTZ00112 708 KKKSDPHNVDFKSFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYIS 787
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 786 GMPGTGKTATVYSVIQLLQHKTKQKMLPDFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKLLDRLFNQNKKDN 865
Cdd:PTZ00112 788 GMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDN 867
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 866 RNVSILIIDEIDYLITKTQKVLFTLFDWPTKVNSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKE 945
Cdd:PTZ00112 868 RNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKE 947
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 946 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINFLPWPFKMFLT 1025
Cdd:PTZ00112 948 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLT 1027
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 1026 CVIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNSELLKIMLDKLVKMGILLIRPYIPLESLAKNKNKETLLGFN 1105
Cdd:PTZ00112 1028 CLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIRPYIPLESLAKNKNKEALLGFN 1107
|
1130 1140 1150 1160 1170
....*....|....*....|....*....|....*....|....*....|....*..
gi 156101626 1106 ESSKKNAPETSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1162
Cdd:PTZ00112 1108 ESSKKNANETSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1164
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
749-1056 |
1.40e-36 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 143.06 E-value: 1.40e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 749 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKMLpDFNVFEINGMNVvhp 828
Cdd:COG1474 22 DYVPDRLPHREEEIEELASALRPALRGERPSNVL-IYGPTGTGKTAVAKYVLEELEEEAEERGV-DVRVVYVNCRQA--- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 829 NAAYQVLYK---QL-FNKKPPNALNSF-KLLDRLFNQNKKDNRNVsILIIDEIDYLITKT-QKVLFTLFDWPTKV-NSKL 901
Cdd:COG1474 97 STRYRVLSRileELgSGEDIPSTGLSTdELFDRLYEALDERDGVL-VVVLDEIDYLVDDEgDDLLYQLLRANEELeGARV 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 902 VLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-CKE-IIDHTAIQLCARKVANVSGDIRKALQI 979
Cdd:COG1474 176 GVIGISNDLEFLENLDPRVKSSLGEEEIVFPPYDADELRDILEDRAELaFYDgVLSDEVIPLIAALAAQEHGDARKAIDL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 980 CRKAFEN--KRGQKIV-PRDITEATNQLFDSPLTNAINFLPWPFKMFLtCVIVELRMLNDFIIPYKKVLNRYKVLVETSG 1056
Cdd:COG1474 256 LRVAGEIaeREGSDRVtEEHVREAREKIERDRLLEVLRGLPTHEKLVL-LAIAELLKDGEDPVRTGEVYEAYEELCEELG 334
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
745-1056 |
5.28e-31 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 125.82 E-value: 5.28e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 745 MMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKMLpDFNVFEINGMN 824
Cdd:TIGR02928 7 LLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVF-IYGKTGTGKTAVTKYVMKELEEAAEDRDV-RVVTVYVNCQI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 825 VvhpNAAYQVLYKqLFNK------KPPNALNSF-KLLDRLFNQNKKDNRNVsILIIDEIDYLITKTQKVLFTLF--DWPT 895
Cdd:TIGR02928 85 L---DTLYQVLVE-LANQlrgsgeEVPTTGLSTsEVFRRLYKELNERGDSL-IIVLDEIDYLVGDDDDLLYQLSraRSNG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 896 KV-NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGD 972
Cdd:TIGR02928 160 DLdNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAfyDGVLDDGVIPLCAALAAQEHGD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 973 IRKALQICRKAFEN--KRGQKIVPRD-ITEATNQLFDSPLTNAINFLPWPFKMFLTcVIVELRMLNDFIIPYKKVLNRYK 1049
Cdd:TIGR02928 240 ARKAIDLLRVAGEIaeREGAERVTEDhVEKAQEKIEKDRLLELIRGLPTHSKLVLL-AIANLAANDEDPFRTGEVYEVYK 318
|
....*..
gi 156101626 1050 VLVETSG 1056
Cdd:TIGR02928 319 EVCEDIG 325
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
782-928 |
9.02e-15 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 72.24 E-value: 9.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 782 LYISGMPGTGKTATVYSVIQLLqhktkqkmlpDFNVFEINGMNVVhpnaayqvlykqlfnkkPPNALNSFKLLDRLFNQN 861
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV-----------------SKYVGESEKRLRELFEAA 53
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156101626 862 KKDNRnvSILIIDEIDYLITK-----------TQKVLFTLFDWPTKVNSKLVLIAISNTMD-LPERLIPRCRSRLAFGR 928
Cdd:pfam00004 54 KKLAP--CVIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFTSSNSKVIVIAATNRPDkLDPALLGRFDRIIEFPL 130
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
756-927 |
7.26e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 61.39 E-value: 7.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 756 PCREKEIKEVHGFLESGIKQSgsnqiLYISGMPGTGKTATVYSVIQLLQHktkqkmlPDFNVFEINGMNvvhpnaayqvl 835
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-----LLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASD----------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 836 ykqLFNKKPPNALNSFKLLDRLFNQNKKdnRNVSILIIDEIDYLITKTQK----VLFTLFDWpTKVNSKLVLIAISNTM- 910
Cdd:cd00009 58 ---LLEGLVVAELFGHFLVRLLFELAEK--AKPGVLFIDEIDSLSRGAQNallrVLETLNDL-RIDRENVRVIGATNRPl 131
|
170
....*....|....*....
gi 156101626 911 --DLPERLIPRCRSRLAFG 927
Cdd:cd00009 132 lgDLDRALYDRLDIRIVIP 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
778-923 |
1.37e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.99 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 778 SNQILYISGMPGTGKTATVYSVIQLLQhktkqkmLPDFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKLLDRL 857
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELG-------PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 156101626 858 FNQNKKDnrnvsILIIDEIDYLITKTQKVL-----FTLFDWPTKVNSKLVLIAISNTMDLPERLIPRCRSR 923
Cdd:smart00382 74 ARKLKPD-----VLILDEITSLLDAEQEALlllleELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFD 139
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00112 |
PTZ00112 |
origin recognition complex 1 protein; Provisional |
1-1162 |
0e+00 |
|
origin recognition complex 1 protein; Provisional
Pssm-ID: 240274 [Multi-domain] Cd Length: 1164 Bit Score: 1937.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 1 MTPKKKNHKSYESHKICQPRENRETreshhfrkvNKVPNFHSFHLNDSEILSPTKGGIKLDVSKLSILSFSGTPRKEEPK 80
Cdd:PTZ00112 1 MTPKKKIHKSYESHKICQPRENRET---------NKVPNFHNFHLNDNEILSPTKGGIKLDVSKLSILSFENTPRKEEKK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 81 KKQSRIPDYEQIQGNTQDVYIQLNQRSDTPRKNTSRVTTAEKAkNRKEKHALDSSSSSPSSSPSSSSSFFSSPPSSYSCV 160
Cdd:PTZ00112 72 KKNLNLPDYNQIQNNTHDFYIDLNERSKTPIKNNDNVTTPIKA-NKKEKHNLDSSSSSSISSSLTNISFFSSPTSIYSCL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 161 SDSDSSAHSPRVPRERQASHVFLSSDASPRKAE-PRKSLSKQTRVAHTHNYDHMRRSPRNLSTSKSGT---------EKD 230
Cdd:PTZ00112 151 SNSLSSKHSPKVIKENQSTHVNISSDNSPRNKEiSNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTndknkeknkEKD 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 231 SHKKKDVGGGKENKRNSEKGKVGNSHGDVRTLRSATKEKKDEKKV-VSGSRSSVLLKRKSECLSKDSYVYRNLVKRAKTG 309
Cdd:PTZ00112 231 KNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKNvVSGIRSSVLLKRKSQCLRKDSYVYSNHQKKAKTG 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 310 LPRG--GARSGSSESGDDDGSGSSDLGSRRGSGR--PSPRRSSSTQKQTQPQKSSHPQKNNQPQKNNQPLRHTATINKRS 385
Cdd:PTZ00112 311 DPKNiiHRNNGSSNSNNDDTSSSNHLGSNRISNRnpSSPYKKQTTTKHTNNTKNNKYNKTKTTQKFNHPLRHHATINKRS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 386 SMLPMSEQKGRGASEAREQHKEFTSEEVAKLTKDTSIKLVEQDACQYEDGVIYECICINEVQYSIGDDVMVLCEGSGGGS 465
Cdd:PTZ00112 391 SMLPMSEQKGRGASEKSEYIKEFTMEEVAKLTKDTTIKLVEENSCQYEDGVIYESIQINDVEYSIGDDVLIFCTGNGNTY 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 466 SGRSGTTTHHPSKNQLGKTYQLRKGKISSFYQNGESNQVEAEVCIYFDQHDAAYIKELSEKQKSRRSKADFEVFLDEKTR 545
Cdd:PTZ00112 471 NGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQHDAQYIKELEEKQKSRRCKADFEVFLDDDTK 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 546 NFYLLGNIEFKLVDAKMILKKIHVYNEKRLYDEDKTSKQGKDKFLCTHYLKEREERICDLQNSEHWDNLVLGSSDLYYSF 625
Cdd:PTZ00112 551 NFYLLGNIHFKILDAKMILKKIYVYNEKELYDEDKTAKQGKDKFLCTHYLKEREERICFIQNSEHWDNLVLGSSDLYYSF 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 626 SNGKKSNKNKSLKMIIDKLKVGEAGGGRGQSGNAATNPGSSTTSSPSKSPSGSKSPNGSKPPSGNKTPGSNKPPSGnktG 705
Cdd:PTZ00112 631 SNEKKSNKNKSLKLIIEKLKINEQGGQKKNSKKEYMNPAQTTTSSKAKTHSKTKNDHNKSKTSKNKEPSSTSFLQD---V 707
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 706 GKAKTPPNVDLKNFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYIS 785
Cdd:PTZ00112 708 KKKSDPHNVDFKSFIKQDQENYYVNLLRNITDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYIS 787
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 786 GMPGTGKTATVYSVIQLLQHKTKQKMLPDFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKLLDRLFNQNKKDN 865
Cdd:PTZ00112 788 GMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDN 867
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 866 RNVSILIIDEIDYLITKTQKVLFTLFDWPTKVNSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKE 945
Cdd:PTZ00112 868 RNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKE 947
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 946 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINFLPWPFKMFLT 1025
Cdd:PTZ00112 948 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLT 1027
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 1026 CVIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNSELLKIMLDKLVKMGILLIRPYIPLESLAKNKNKETLLGFN 1105
Cdd:PTZ00112 1028 CLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIRPYIPLESLAKNKNKEALLGFN 1107
|
1130 1140 1150 1160 1170
....*....|....*....|....*....|....*....|....*....|....*..
gi 156101626 1106 ESSKKNAPETSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1162
Cdd:PTZ00112 1108 ESSKKNANETSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1164
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
749-1056 |
1.40e-36 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 143.06 E-value: 1.40e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 749 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKMLpDFNVFEINGMNVvhp 828
Cdd:COG1474 22 DYVPDRLPHREEEIEELASALRPALRGERPSNVL-IYGPTGTGKTAVAKYVLEELEEEAEERGV-DVRVVYVNCRQA--- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 829 NAAYQVLYK---QL-FNKKPPNALNSF-KLLDRLFNQNKKDNRNVsILIIDEIDYLITKT-QKVLFTLFDWPTKV-NSKL 901
Cdd:COG1474 97 STRYRVLSRileELgSGEDIPSTGLSTdELFDRLYEALDERDGVL-VVVLDEIDYLVDDEgDDLLYQLLRANEELeGARV 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 902 VLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-CKE-IIDHTAIQLCARKVANVSGDIRKALQI 979
Cdd:COG1474 176 GVIGISNDLEFLENLDPRVKSSLGEEEIVFPPYDADELRDILEDRAELaFYDgVLSDEVIPLIAALAAQEHGDARKAIDL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 980 CRKAFEN--KRGQKIV-PRDITEATNQLFDSPLTNAINFLPWPFKMFLtCVIVELRMLNDFIIPYKKVLNRYKVLVETSG 1056
Cdd:COG1474 256 LRVAGEIaeREGSDRVtEEHVREAREKIERDRLLEVLRGLPTHEKLVL-LAIAELLKDGEDPVRTGEVYEAYEELCEELG 334
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
745-1056 |
5.28e-31 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 125.82 E-value: 5.28e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 745 MMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKQKMLpDFNVFEINGMN 824
Cdd:TIGR02928 7 LLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVF-IYGKTGTGKTAVTKYVMKELEEAAEDRDV-RVVTVYVNCQI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 825 VvhpNAAYQVLYKqLFNK------KPPNALNSF-KLLDRLFNQNKKDNRNVsILIIDEIDYLITKTQKVLFTLF--DWPT 895
Cdd:TIGR02928 85 L---DTLYQVLVE-LANQlrgsgeEVPTTGLSTsEVFRRLYKELNERGDSL-IIVLDEIDYLVGDDDDLLYQLSraRSNG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 896 KV-NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGD 972
Cdd:TIGR02928 160 DLdNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAfyDGVLDDGVIPLCAALAAQEHGD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 973 IRKALQICRKAFEN--KRGQKIVPRD-ITEATNQLFDSPLTNAINFLPWPFKMFLTcVIVELRMLNDFIIPYKKVLNRYK 1049
Cdd:TIGR02928 240 ARKAIDLLRVAGEIaeREGAERVTEDhVEKAQEKIEKDRLLELIRGLPTHSKLVLL-AIANLAANDEDPFRTGEVYEVYK 318
|
....*..
gi 156101626 1050 VLVETSG 1056
Cdd:TIGR02928 319 EVCEDIG 325
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
749-1056 |
1.41e-29 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 122.26 E-value: 1.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 749 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILyISGMPGTGKTATVYSVIQLLQHKTKqkmlpdfnvfeinGMNVVHP 828
Cdd:PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVL-IYGPPGTGKTTTVKKVFEELEEIAV-------------KVVYVYI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 829 N--------AAYQVLYKQLFNKKPPNALNSFkllDRLFNQ--NKKDNRN-VSILIIDEIDYLITKT-QKVLFTLFDWPTK 896
Cdd:PRK00411 92 NcqidrtryAIFSEIARQLFGHPPPSSGLSF---DELFDKiaEYLDERDrVLIVALDDINYLFEKEgNDVLYSLLRAHEE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 897 V-NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGDI 973
Cdd:PRK00411 169 YpGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGfyPGVVDDEVLDLIADLTAREHGDA 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 974 RKALQICRKAFEN--KRG-QKIVPRDITEATNQLFDSPLTNAINFLPWPFKMFLtCVIVELRMLNDFIIPYKKVLNRYKV 1050
Cdd:PRK00411 249 RVAIDLLRRAGLIaeREGsRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLL-RAIVRLLKKGGDEVTTGEVYEEYKE 327
|
....*.
gi 156101626 1051 LVETSG 1056
Cdd:PRK00411 328 LCEELG 333
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
782-928 |
9.02e-15 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 72.24 E-value: 9.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 782 LYISGMPGTGKTATVYSVIQLLqhktkqkmlpDFNVFEINGMNVVhpnaayqvlykqlfnkkPPNALNSFKLLDRLFNQN 861
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV-----------------SKYVGESEKRLRELFEAA 53
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156101626 862 KKDNRnvSILIIDEIDYLITK-----------TQKVLFTLFDWPTKVNSKLVLIAISNTMD-LPERLIPRCRSRLAFGR 928
Cdd:pfam00004 54 KKLAP--CVIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFTSSNSKVIVIAATNRPDkLDPALLGRFDRIIEFPL 130
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
756-927 |
7.26e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 61.39 E-value: 7.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 756 PCREKEIKEVHGFLESGIKQSgsnqiLYISGMPGTGKTATVYSVIQLLQHktkqkmlPDFNVFEINGMNvvhpnaayqvl 835
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-----LLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASD----------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 836 ykqLFNKKPPNALNSFKLLDRLFNQNKKdnRNVSILIIDEIDYLITKTQK----VLFTLFDWpTKVNSKLVLIAISNTM- 910
Cdd:cd00009 58 ---LLEGLVVAELFGHFLVRLLFELAEK--AKPGVLFIDEIDSLSRGAQNallrVLETLNDL-RIDRENVRVIGATNRPl 131
|
170
....*....|....*....
gi 156101626 911 --DLPERLIPRCRSRLAFG 927
Cdd:cd00009 132 lgDLDRALYDRLDIRIVIP 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
778-923 |
1.37e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.99 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 778 SNQILYISGMPGTGKTATVYSVIQLLQhktkqkmLPDFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKLLDRL 857
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELG-------PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 156101626 858 FNQNKKDnrnvsILIIDEIDYLITKTQKVL-----FTLFDWPTKVNSKLVLIAISNTMDLPERLIPRCRSR 923
Cdd:smart00382 74 ARKLKPD-----VLILDEITSLLDAEQEALlllleELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFD 139
|
|
| ATPase_2 |
pfam01637 |
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is ... |
758-910 |
6.74e-06 |
|
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.
Pssm-ID: 376582 [Multi-domain] Cd Length: 222 Bit Score: 48.47 E-value: 6.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 758 REKEIKEVHGFLEsgikqSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKmlpdfnVFEINGMNVvhpNAAYQVLY- 836
Cdd:pfam01637 4 REKELKELEEWAE-----RGPNLIYVIYGPEGCGKTALLRESIENLLDLGYYV------IYYDPLRRY---FISKLDRFe 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 837 --KQLFNKK----PPNALNSFKL----LDRLFNQNKKDNRNVsILIIDEIDYLITKTQ-----KVLFTLFDWPTKV-NSK 900
Cdd:pfam01637 70 evRRLAEALgiavPKAELEESKLaflaIELLLEALKRRGKKI-AIIIDEVQQAIGLNGaellvKELLNLIEYLTKEyHLC 148
|
170
....*....|
gi 156101626 901 LVLIAISNTM 910
Cdd:pfam01637 149 HVICLSSEGL 158
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
755-892 |
2.01e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 46.34 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 755 LPCREKEIKEVHGFLESGIkqSGSNQILYISGMPGTGKTATV--------YSVIQLLQHKTKQ--------KMLPDFNVF 818
Cdd:pfam13191 2 LVGREEELEQLLDALDRVR--SGRPPSVLLTGEAGTGKTTLLrellraleRDGGYFLRGKCDEnlpyspllEALTREGLL 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156101626 819 E-INGMNVVHPNAAYQV----LYKQLFNKKPPNALNSFKLLDRLFNQNKKDNRNVsILIIDEIDYLITKTQKVLFTLFD 892
Cdd:pfam13191 80 RqLLDELESSLLEAWRAalleALAPVPELPGDLAERLLDLLLRLLDLLARGERPL-VLVLDDLQWADEASLQLLAALLR 157
|
|
| AAA_lid_10 |
pfam17872 |
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ... |
958-985 |
1.19e-04 |
|
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.
Pssm-ID: 407729 [Multi-domain] Cd Length: 99 Bit Score: 42.11 E-value: 1.19e-04
10 20
....*....|....*....|....*...
gi 156101626 958 AIQLCARKVANVSGDIRKALQICRKAFE 985
Cdd:pfam17872 49 AIEIASRKVASVSGDARRALKICKRAAE 76
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
853-975 |
4.29e-04 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 43.09 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 853 LLDRLFNQNKKDNRNVSILIIDEIDYLITK--TQKVLFTLFDWPTKVNSKLVLiaisnTMDLPERLIP----RCRSRLAF 926
Cdd:pfam00308 83 IRDNKTNQFKEKYRNVDVLLIDDIQFLAGKegTQEEFFHTFNALHESGKQIVF-----SSDRPPKELEeledRLRSRFQW 157
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 156101626 927 GRLVfspykgdEIEK--------IIKERLENCKEIIDHTAIQLCARkvaNVSGDIRK 975
Cdd:pfam00308 158 GLVT-------DIEPpdletrlaILRKKAEAEGIEIPPEVLNFIAQ---RVTDNVRE 204
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
780-916 |
7.25e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 40.79 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 780 QILYISGMPGTGKTAtvysviqLLQHKTKQKMLPDFNVFEINGMNVVHPNAAYQVLYKQLFNkkPPNALNSFKLLDRLFN 859
Cdd:pfam13401 6 GILVLTGESGTGKTT-------LLRRLLEQLPEVRDSVVFVDLPSGTSPKDLLRALLRALGL--PLSGRLSKEELLAALQ 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 156101626 860 QNKKDNRNVSILIIDEIDYLitkTQKVLFTLFDWPtKVNSKLVLIAISNTMDLPERL 916
Cdd:pfam13401 77 QLLLALAVAVVLIIDEAQHL---SLEALEELRDLL-NLSSKLLQLILVGTPELRELL 129
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
758-880 |
9.72e-03 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 40.04 E-value: 9.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156101626 758 REKEIKEVHGFLESGIKQsgsNQILYisGMPGTGKTATVYSVIQLLQHKTKQKMLPDFNVFEINGMNVVHpnaayQVLYK 837
Cdd:CHL00095 184 REKEIERVIQILGRRTKN---NPILI--GEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA-----GTKYR 253
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 156101626 838 QLFNKKppnalnsfklLDRLFNQNKKDNrNVsILIIDEIDYLI 880
Cdd:CHL00095 254 GEFEER----------LKRIFDEIQENN-NI-ILVIDEVHTLI 284
|
|
| |
