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Conserved domains on  [gi|15607455|ref|NP_214828|]
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membrane protein [Mycobacterium tuberculosis H37Rv]

Protein Classification

DUF3060 domain-containing protein( domain architecture ID 10567956)

DUF3060 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3060 pfam11259
Protein of unknown function (DUF3060); Some members in this family of proteins are annotated ...
 157-212 1.00e-20

Protein of unknown function (DUF3060); Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.


:

Pssm-ID: 431765  Cd Length: 58  Bit Score: 81.85  E-value: 1.00e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15607455   157 VSGMSNTVVITGHCTSLTVSGMRNSVTVDSVDTIEAAGFNNEVTYHSGSPKISNAG 212
Cdd:pfam11259   1 VSGSNNTVTLTGTCGAVTVSGSSNTVTVDSVDTITVSGNDNTVTYRSGDPKVSDRG 56
 
Name Accession Description Interval E-value
DUF3060 pfam11259
Protein of unknown function (DUF3060); Some members in this family of proteins are annotated ...
 157-212 1.00e-20

Protein of unknown function (DUF3060); Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.


Pssm-ID: 431765  Cd Length: 58  Bit Score: 81.85  E-value: 1.00e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15607455   157 VSGMSNTVVITGHCTSLTVSGMRNSVTVDSVDTIEAAGFNNEVTYHSGSPKISNAG 212
Cdd:pfam11259   1 VSGSNNTVTLTGTCGAVTVSGSSNTVTVDSVDTITVSGNDNTVTYRSGDPKVSDRG 56
 
Name Accession Description Interval E-value
DUF3060 pfam11259
Protein of unknown function (DUF3060); Some members in this family of proteins are annotated ...
 157-212 1.00e-20

Protein of unknown function (DUF3060); Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.


Pssm-ID: 431765  Cd Length: 58  Bit Score: 81.85  E-value: 1.00e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15607455   157 VSGMSNTVVITGHCTSLTVSGMRNSVTVDSVDTIEAAGFNNEVTYHSGSPKISNAG 212
Cdd:pfam11259   1 VSGSNNTVTLTGTCGAVTVSGSSNTVTVDSVDTITVSGNDNTVTYRSGDPKVSDRG 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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