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Conserved domains on  [gi|1559461009|gb|QAB06070|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Peckia australis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-337 2.03e-94

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 284.02  E-value: 2.03e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   1 MFNNSSKIVFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNK-LMSTEASLKYFLTQALASSVFLFATILFLL 79
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKnLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  80 NSNkiNSNFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYIIFKPLIITSIILSSLIGA 159
Cdd:MTH00160   81 NLM--LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 160 LGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFF 239
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 240 NLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFMLNYYENNWMNNSLYKSNYLMIFMM 319
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318

                         330
                  ....*....|....*...
gi 1559461009 320 ySFFSSMGLFVMLSLYFL 337
Cdd:MTH00160  319 -SFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-337 2.03e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 284.02  E-value: 2.03e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   1 MFNNSSKIVFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNK-LMSTEASLKYFLTQALASSVFLFATILFLL 79
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKnLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  80 NSNkiNSNFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYIIFKPLIITSIILSSLIGA 159
Cdd:MTH00160   81 NLM--LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 160 LGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFF 239
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 240 NLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFMLNYYENNWMNNSLYKSNYLMIFMM 319
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318

                         330
                  ....*....|....*...
gi 1559461009 320 ySFFSSMGLFVMLSLYFL 337
Cdd:MTH00160  319 -SFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-279 3.23e-31

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 118.96  E-value: 3.23e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  24 ANSWLGAWMGLEINLLSFIPLMSDNK--LMSTEASLKYFLTQALASSVFLFATILFLLNSNKIN---------------S 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGksPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSfdelskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  87 NFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLIL-MTWQKIAPLMLI--------SYIIFKPLIITSIILSSLI 157
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 158 GALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNL----LWMTYFMFYTFLTFTMIFMFN-----MFKTSHVNQLFTLAF 228
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1559461009 229 HSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMT 279
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-295 2.34e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 114.44  E-value: 2.34e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  10 FFSILMMGTL---ISISANSWLGAWMGLEINLLSFIPL--MSDNKLMSTEASLKYFLTQALASSVFLF------------ 72
Cdd:COG1007   104 FYALLLFATLgmmLMASANDLLTLFLGLELLSLSLYVLvaFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgsl 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  73 --ATILFLLNSNKINSNFFME--MMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIA---PLMLISYIIF-- 143
Cdd:COG1007   184 nlAGIAAALAAGGANSPLLLLglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaALLRLLVEAFpg 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 144 -----KPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFY-------TFLTFTMIFM 211
Cdd:COG1007   264 laadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYllaylfmNLGAFAVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 212 F--NMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRL 289
Cdd:COG1007   344 LsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423


                  ....*.
gi 1559461009 290 SYSAFM 295
Cdd:COG1007   424 VKAMYF 429
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 2-329 1.89e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.55  E-value: 1.89e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   2 FNNSSKIVFFSILM---MGTLISISANSWLGAWMGLEINLLSFIPLMS--DNKLMSTEASLKYFLTQALASSVFLF---- 72
Cdd:TIGR01770  96 KEKINKFEFYILLLfalLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlkRKSRFSTEAGLKYFILGAFSSGLLLFgisl 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  73 -----------ATILFLLNSNKINSNFFMEM-MIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLI-- 138
Cdd:TIGR01770 176 iygftgslnfeDLLLFLSNGMLNISLLLLGIvLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlr 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 139 --------SYIIFKPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFY--------- 201
Cdd:TIGR01770 256 lflyilfgFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYifiyalmsl 335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 202 -TFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTL 280
Cdd:TIGR01770 336 gAFGVLSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSV 415

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1559461009 281 ITLYFYLRLSYSAFMlNYYENNWMNNSLYKSNYLMIFMMYSFFSSMGLF 329
Cdd:TIGR01770 416 IGAFYYLRVVKVMYF-DKPERRIPSNPQSKAQSLLLSISALFILFLGLF 463
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-337 2.03e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 284.02  E-value: 2.03e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   1 MFNNSSKIVFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNK-LMSTEASLKYFLTQALASSVFLFATILFLL 79
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKnLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  80 NSNkiNSNFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYIIFKPLIITSIILSSLIGA 159
Cdd:MTH00160   81 NLM--LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 160 LGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFF 239
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 240 NLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFMLNYYENNWMNNSLYKSNYLMIFMM 319
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318

                         330
                  ....*....|....*...
gi 1559461009 320 ySFFSSMGLFVMLSLYFL 337
Cdd:MTH00160  319 -SFISLFGLILSSLLFLL 335
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-295 4.73e-65

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 208.91  E-value: 4.73e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   6 SKIVFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNKL-MSTEASLKYFLTQALASSVFLFATILFLLNSNKI 84
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHpRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  85 N----SNFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAP---LMLISYIIFKPLIITSIILSSLI 157
Cdd:MTH00112   85 DitqlTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPltlLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 158 GALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFL 237
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1559461009 238 FFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFM 295
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-292 7.68e-65

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 208.55  E-value: 7.68e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   8 IVFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNKLM-STEASLKYFLTQALASSVFLFATILFLLNSNKIN- 85
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPrSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTi 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  86 ---SNFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLML---ISYIIFKPLIITSIILSSLIGA 159
Cdd:MTH00105   87 tklTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSIlyqISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 160 LGGLNQTSLRKLMAYSSINHLGWMLAAM-YNSNLLwMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLF 238
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILpYNPTLT-LLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1559461009 239 FNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYS 292
Cdd:MTH00105  246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYS 299
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-292 7.19e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 203.50  E-value: 7.19e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   9 VFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDN-KLMSTEASLKYFLTQALASSVFLFATIL--FLLNSNKIN 85
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHhHPRAVEATTKYFLTQATAAAMILFASTTnaWLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  86 --SNFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYIIF--KPLIITSIILSSLIGALG 161
Cdd:MTH00135   88 qmSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPtnPTLLITLGLTSTLVGGWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 162 GLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFFNL 241
Cdd:MTH00135  168 GLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLIL 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1559461009 242 LSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYS 292
Cdd:MTH00135  248 LSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA 298
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 9-292 8.87e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 195.52  E-value: 8.87e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   9 VFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNKL-MSTEASLKYFLTQALASSVFLFATIL--FLLNSNKIN 85
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHpRATEAATKYFLTQASASALILFSSTInaWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  86 S--NFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLML---ISYIIFKPLIITSIILSSLIGAL 160
Cdd:MTH00070   88 NmqTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALliqISHLLNSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 161 GGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFFN 240
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1559461009 241 LLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYS 292
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-338 6.65e-57

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 188.22  E-value: 6.65e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   3 NNSSKIVFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDN-KLMSTEASLKYFLTQALASSVFLFATIL--FLL 79
Cdd:MTH00041    2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNfSPRSVEATIKYFLVQAFSAAILLNGALIqaWLS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  80 NSNKINS--NFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYII---FKPLIITSIILS 154
Cdd:MTH00041   82 GSWSINGplNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnllNSNILILCGILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 155 SLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMK 234
Cdd:MTH00041  162 VLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 235 FFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFMLNYYENNWMNNSLYKSN-- 312
Cdd:MTH00041  242 FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGni 321

                         330       340
                  ....*....|....*....|....*...
gi 1559461009 313 --YLMIFMMYSFFSSMGLFVMLSLYFLL 338
Cdd:MTH00041  322 tvYGVILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-329 1.29e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 168.53  E-value: 1.29e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   5 SSKIVFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNKLMST-EASLKYFLTQALASSVFLFATILFLLNSNk 83
Cdd:MTH00144    4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSEsESVVKYFIIQSLGSSLLIFGSLIMYNLSF- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  84 insNFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYIIFKPLIITSI----ILSSLIGA 159
Cdd:MTH00144   83 ---SWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLcvisVLSALVGS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 160 LGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLaFHSKTMKFFLFF 239
Cdd:MTH00144  160 IGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIIS 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 240 NLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFMLNYYENNWMNNSLYKSNYLMIFMM 319
Cdd:MTH00144  239 LLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNLL 318

                         330
                  ....*....|
gi 1559461009 320 YSFFSSMGLF 329
Cdd:MTH00144  319 GGLLFLLLYL 328
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 9-338 3.77e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 167.84  E-value: 3.77e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   9 VFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMS-DNKLMSTEASLKYFLTQALASSVFLFATILFLLNSNKINSN 87
Cdd:MTH00200    8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIkQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGIS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  88 FFM----EMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLML---ISYIIFKPLIITSIILSSLIGAL 160
Cdd:MTH00200   88 EMLgplsETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALliqLAPALNSNILLLLGLLSVLVGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 161 GGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFFN 240
Cdd:MTH00200  168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 241 LLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSY-SAFMLNYYENNWMNNSLYKSNYLMIFMM 319
Cdd:MTH00200  248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYlTLLTLSPNQINMMSSWRTKSNSNLLVGL 327

                         330
                  ....*....|....*....
gi 1559461009 320 YSFFSSMGLFVMLSLYFLL 338
Cdd:MTH00200  328 LLLLSILGLPLTPQLLFLF 346
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 10-296 6.45e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 166.88  E-value: 6.45e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  10 FFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNKL-MSTEASLKYFLTQALASSVFLFATILFLLNSNKINSnf 88
Cdd:MTH00011   11 FSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMnQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKN-- 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  89 FMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYII---FKPLIITSIILSSLIGALGGLNQ 165
Cdd:MTH00011   89 ITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTshnILPMMTSMAAMSALAGGLGGMNQ 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 166 TSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLG 245
Cdd:MTH00011  169 TQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLG 248

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1559461009 246 GLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFML 296
Cdd:MTH00011  249 GLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-332 1.84e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 144.43  E-value: 1.84e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   9 VFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNKLMS-TEASLKYFLTQALASSVFLFATILFLLNsnkINSN 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITeNEGAMKYFLFQEFGSALLLMGGSLSFSN---LYLS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  88 FFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYIIFKP-LIITSIILSSLIGALGGLNQT 166
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFmGLLICSVLSSLIGGIGGMNQS 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 167 SLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLGG 246
Cdd:MTH00197  159 NIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 247 LPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFMLNYYENNwMNNSLYKSNYLMIFMMYSFFSSM 326
Cdd:MTH00197  239 LPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMIN-FLMKINLLYSGLFILLMMMLPLL 317


                  ....*.
gi 1559461009 327 GLFVML 332
Cdd:MTH00197  318 MIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-279 3.23e-31

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 118.96  E-value: 3.23e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  24 ANSWLGAWMGLEINLLSFIPLMSDNK--LMSTEASLKYFLTQALASSVFLFATILFLLNSNKIN---------------S 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGksPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSfdelskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  87 NFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLIL-MTWQKIAPLMLI--------SYIIFKPLIITSIILSSLI 157
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 158 GALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNL----LWMTYFMFYTFLTFTMIFMFN-----MFKTSHVNQLFTLAF 228
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1559461009 229 HSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMT 279
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-295 2.34e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 114.44  E-value: 2.34e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  10 FFSILMMGTL---ISISANSWLGAWMGLEINLLSFIPL--MSDNKLMSTEASLKYFLTQALASSVFLF------------ 72
Cdd:COG1007   104 FYALLLFATLgmmLMASANDLLTLFLGLELLSLSLYVLvaFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgsl 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  73 --ATILFLLNSNKINSNFFME--MMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIA---PLMLISYIIF-- 143
Cdd:COG1007   184 nlAGIAAALAAGGANSPLLLLglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaALLRLLVEAFpg 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 144 -----KPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFY-------TFLTFTMIFM 211
Cdd:COG1007   264 laadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYllaylfmNLGAFAVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 212 F--NMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRL 289
Cdd:COG1007   344 LsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423


                  ....*.
gi 1559461009 290 SYSAFM 295
Cdd:COG1007   424 VKAMYF 429
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-295 8.51e-28

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 112.99  E-value: 8.51e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  10 FFSILMM---GTLISISANSWLGAWMGLEINLLSFIPL--MSDNKLMSTEASLKYFLTQALASSVFL------------- 71
Cdd:PRK05777  105 FYLLVLFallGMMVMVSANDLLTLFLGLELLSLPLYALaaLRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgsl 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  72 -FATILFLLNSNKINSN--FFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIA---PLMLISYIIF-- 143
Cdd:PRK05777  185 sFAGIAKALADGSGNSLllLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVAFgg 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 144 -----KPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAM-------YNSNLLWMTYFMFYTFLTFTMIFM 211
Cdd:PRK05777  265 lsedwQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtaegYSAVLFYLLAYLFMTLGAFGVISL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 212 F--NMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRL 289
Cdd:PRK05777  345 LrrKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424


                  ....*.
gi 1559461009 290 SYSAFM 295
Cdd:PRK05777  425 IKLMYF 430
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 5-338 4.84e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 104.71  E-value: 4.84e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   5 SSKIVFFSILMMGTLISISANSWLGAWMGLEINLLSFIPL--MSDNKLMSTEASLKYFLTQALASSVFLFATILFLLNSN 82
Cdd:MTH00199   97 QSSPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILvaLKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTG 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  83 K-----INSNFFME---MMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYIIFKP-LIITSIIL 153
Cdd:MTH00199  177 EtsiqgINSILTGDvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTnVVLICAVL 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 154 SSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAM-------YNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVnQLFTL 226
Cdd:MTH00199  257 SIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVaigsfesIQASLIYMIIYVIMSICSFSIILSLKLTKGLIV-EVSGL 335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 227 AFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRL-SYSAFMLNYYENNWmN 305
Cdd:MTH00199  336 SRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVvQIIYFQADYSILIW-Q 414

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1559461009 306 NSLYKSNYLMIF--MMYSFFSSMGLFVMLSLYFLL 338
Cdd:MTH00199  415 KVLKKEERLDLSksILIGVTFFIILFLMISPNFLL 449
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-289 1.54e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.42  E-value: 1.54e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  16 MGTLISISANSWLGAWMGLEINLLSFIPLMSDNK--LMSTEASLKYFLTQALASSVFLFATIL--------------FLL 79
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRgsGYSAEAGLKYFVLGALSSGLFLFGCALlcgttgglhlsyinLVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  80 NSNKINSNFFMEM---MIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPL-MLISYIIFKPLIITSIILSS 155
Cdd:MTH00196   84 NSGQSFSSVSVPIgylLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFsILVSIGLNVNILLIGGLFSL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 156 LIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSN-------LLWMTYFMFYTFLTFTMIFMFNmFKTSHVNQLFTLAF 228
Cdd:MTH00196  164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiqasLVYLFIYIIMSICVFSIILALN-VYKNLIIEFSGLSR 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1559461009 229 HSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRL 289
Cdd:MTH00196  243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 2-329 1.89e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.55  E-value: 1.89e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   2 FNNSSKIVFFSILM---MGTLISISANSWLGAWMGLEINLLSFIPLMS--DNKLMSTEASLKYFLTQALASSVFLF---- 72
Cdd:TIGR01770  96 KEKINKFEFYILLLfalLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlkRKSRFSTEAGLKYFILGAFSSGLLLFgisl 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  73 -----------ATILFLLNSNKINSNFFMEM-MIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLI-- 138
Cdd:TIGR01770 176 iygftgslnfeDLLLFLSNGMLNISLLLLGIvLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlr 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 139 --------SYIIFKPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFY--------- 201
Cdd:TIGR01770 256 lflyilfgFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYifiyalmsl 335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 202 -TFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTL 280
Cdd:TIGR01770 336 gAFGVLSLLRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSV 415

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1559461009 281 ITLYFYLRLSYSAFMlNYYENNWMNNSLYKSNYLMIFMMYSFFSSMGLF 329
Cdd:TIGR01770 416 IGAFYYLRVVKVMYF-DKPERRIPSNPQSKAQSLLLSISALFILFLGLF 463
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 13-289 6.23e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 78.75  E-value: 6.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  13 ILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNKLMST----------EASLKYFLTQALASSVFLFATILF----- 77
Cdd:MTH00198  196 IVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGShfpspgntppESGLKYWILGAMSSGFYLFGCALYfgftg 275

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  78 -------LLNSNKINSNFFME------MMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQK-IAPLMLISYIIF 143
Cdd:MTH00198  276 negmlgtILSATLETTNIELRqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKfTVYILLTSLVIT 355

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 144 KPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWML----AAMYNSNLLWMTYFMFY---TFLTFTMIFMFNMFK 216
Cdd:MTH00198  356 SKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigvsAGTYESLQASWTYAVTYlvsALASFTVICTLEEFG 435

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 217 TSHVNQ------------------LFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQ-----SLTENSQLFLLT 273
Cdd:MTH00198  436 TRTPTSrqrdgsfgnynlvrrlvdLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVgsikiAFSSSLSIYYLV 515

                         330
                  ....*....|....*...
gi 1559461009 274 --FMVLMTLITLYFYLRL 289
Cdd:MTH00198  516 alFAIICTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-293 3.72e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 66.71  E-value: 3.72e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  10 FFSILMMGTLISISANSWLGAWMGLEINLL-SFIPLMSDNKLMSTEASLKYFLTQALASSVFLFATILFLLNSNKIN--- 85
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLaSYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNmad 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  86 --------SNFFME---MMIFSSLLLKSGSAPFHFWFPNVMEG--------LSWLNT-----LILMTWQKIAPLMLISYI 141
Cdd:COG0651   192 laarlaelDPGLLLaafALLLVGFGIKAALFPLHFWLPDAYPAapspvsalLSGLLTkvgvyAILRVLTLLFGADPALFL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 142 ifKPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFltFTMIFMFNMF------ 215
Cdd:COG0651   272 --GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLL--NHALAKALLFlaagai 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 216 ----KTSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSY 291
Cdd:COG0651   348 eratGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFG 427


                  ..
gi 1559461009 292 SA 293
Cdd:COG0651   428 RA 429
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 54-295 1.89e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 61.65  E-value: 1.89e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  54 EASLKYFLTQALASSVFLFATILFLLNSNKINSNFFMEMMI--------------FSSLLLKSGSAPFHFWFPNVM-EGL 118
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSenptvvakialalfIAGLAMKSGAVPVHMWLPDAYpAAP 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 119 SWLNTLILMTWQ-KIAPLMLISYIIFKP---------LIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWML---- 184
Cdd:PRK08376  252 SSISAMLLVIKQaGLYALARVLFSIYGPainlatvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglg 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 185 ----------------AAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLP 248
Cdd:PRK08376  332 vglaalgdpamasygeIALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLP 411

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1559461009 249 PFLGFLPKWMVIQSltenSQLF---LLTFMVLMTLITLYFYLRLSYSAFM 295
Cdd:PRK08376  412 PFNGFASKWLIYES----SALFnpiLGVIAMIGSVLTLASFVKVFHTAFF 457
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-295 1.12e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.12  E-value: 1.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  34 LEINLLSFIPLMSDNK-LMSTEASLKYFLTQALASSVFLFATILFLLNSNKINSNFFMEM------------MIFSSLLL 100
Cdd:PRK08375  135 LEIMSLSSYALVAMGGdRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGAlaenptvvtafgFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 101 KSGSAPFHFWFPNVMEGLSWLNTLI---LMTWQKIAPLMLISYIIFKP----------LIITSIILSSLIGALGGLNQTS 167
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAAPPVVTALlsgLVTKVAVYALIRIYFTVFGGdfrfalglgwLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 168 LRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTF--------LTFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFF 239
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalmkgaLFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1559461009 240 NLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFM 295
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFF 430
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 88-324 4.20e-08

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 53.72  E-value: 4.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  88 FFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLISYIIFKPLIITsIILSSLIGALGGLNQTS 167
Cdd:MTH00091   57 FSFGYFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFL-LLFGLLICFFQMFLLKS 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 168 LRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTFLTFTMIFMFNMFKTSHVNQLFTLAFhsktmkfflffnllsLGGL 247
Cdd:MTH00091  136 YKNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWETLLV---------------FMNL 200

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1559461009 248 PPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFylrlsySAFMLNYYENNWMNNSLYKSNYLMIFMMYSFFS 324
Cdd:MTH00091  201 PFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSL------SFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLS 271
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
52-288 6.59e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.90  E-value: 6.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  52 STEASLKYFLTQALASSVFLF-ATILFLLNSNKINSNFFMEMMIFSSLLL--------------KSGSAPFHFWFPNVME 116
Cdd:PRK02504  159 SNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALITSPSLGlalalvfviagiafKISAVPFHQWTPDVYE 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 117 GLSWLNTLILMTWQKIAPLMLISYII----------FKPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAA 186
Cdd:PRK02504  239 GSPTPVVAFLSVGSKAAGFALAIRLLvtafpsfdeqWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIG 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 187 M-------YNSNLLWMTYFMFYTFLTFTMIFMFNMFK-TSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWM 258
Cdd:PRK02504  319 LvagteagYASMVFYLLAYLFMNLGAFACVILFSLRTgTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIY 398

                         250       260       270
                  ....*....|....*....|....*....|
gi 1559461009 259 VIQSLTENSQLFLLTFMVLMTLITLYFYLR 288
Cdd:PRK02504  399 LFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
ndhB CHL00049
NADH dehydrogenase subunit 2
 52-330 1.01e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 53.08  E-value: 1.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  52 STEASLKYFLTQALASSVFLF-----------ATILFLLNSNKINSNFFMEMMIFSSLLL-------KSGSAPFHFWFPN 113
Cdd:CHL00049  160 SNEATMKYLLMGGASSSILVYgfswlyglsggEIELQEIVNGLINTQMYNSPGISIALIFitvgigfKLSLAPFHQWTPD 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 114 VMEGLSWLNTLILMTWQKIAPLML---ISYIIFKPL-----IITSI--ILSSLIGALGGLNQTSLRKLMAYSSINHLGWM 183
Cdd:CHL00049  240 VYEGSPTPVVAFLSVTSKVAASALatrIFDIPFYFSsnewhLLLEIlaILSMILGNLIAITQTSMKRMLAYSSIGQIGYV 319

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 184 LAAM--------YNSNLLWMTYFMFYTFLTFTMIFMFNMFK-TSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFL 254
Cdd:CHL00049  320 IIGIivgdsndgYASMITYMLFYIFMNLGTFACIVLFGLRTgTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFF 399

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 255 PKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAFM-----LNYYENNWMNNSLYKSNYLMIFMMYSFFSS--MG 327
Cdd:CHL00049  400 GKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLLMTgrnqeITPYVRNYRRSPLRSNNSIELSMIVCVIAStiPG 479


                  ...
gi 1559461009 328 LFV 330
Cdd:CHL00049  480 ISM 482
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
145-294 1.36e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.03  E-value: 1.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 145 PLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFY--------TFLTFTMIFMFNMFK 216
Cdd:PRK12663  273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYlvhdmvvkTALFLIAGSLVRLTG 352

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1559461009 217 TSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAF 294
Cdd:PRK12663  353 YRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAY 430
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 54-294 9.60e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 50.35  E-value: 9.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  54 EASLKYFLTQALASSVFLFATILFL-----LN----SNKINSNFFMEMM----------------IFSSLLLKSGSAPFH 108
Cdd:PRK12667  164 EAAIKYALIGAVGTTLYFLALAFLYatfgtLNmadlSAKIRGLSFPLTGglagnpplalgvalalALWAFTIKAAIFPNH 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 109 FWFPNV-----------MEGL-----SWLNTLILMTWQKIAPLMLISYIIFKPLIITSIILSSLIGALGGLNQTSLRKLM 172
Cdd:PRK12667  244 FWLPDAhpaapspvsamLSGLvvnvgAYAIIRFLYTIFGISPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLL 323

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 173 AYSSINHLGWMLAAMYNSNLLWMTYFMFYTF---LTFTMIFM-----FNMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSL 244
Cdd:PRK12667  324 AYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaIAKSLLFLasgvfIHAAGTRDIDELAGLGRKMPIASFAFLIGALSL 403

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1559461009 245 GGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLITLYFYLRLSYSAF 294
Cdd:PRK12667  404 VGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLF 453
PRK12650 PRK12650
DUF4040 family protein;
92-186 1.27e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.04  E-value: 1.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  92 MMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLI---LMTWQKIAPLMLISYI-----IFKPLIITSIILSSLIGALGGL 163
Cdd:PRK12650  212 VLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLRFSPVfhdvaVWNWLLIIVGMITALMGAVFAV 291

                          90       100
                  ....*....|....*....|...
gi 1559461009 164 NQTSLRKLMAYSSINHLGWMLAA 186
Cdd:PRK12650  292 QKTDLKKLTAYSTVSQLGWIVAT 314
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-294 7.23e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 44.19  E-value: 7.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 152 ILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYT---FLTFTMIFMF-----NMFKTSHVNQL 223
Cdd:PRK12665  281 LLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhITVQTTLFLVvglieRQAGSSSLRRL 360

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1559461009 224 FTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQL---FLLTFMVLMTLITLYFYLRLSYSAF 294
Cdd:PRK12665  361 GGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWlawALVAGGVVTSLLTLYAVARVWTKAF 434
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
101-187 2.38e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 42.70  E-value: 2.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 101 KSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLIS--YIIFK--PLIITSI----ILSSLIGALGGLNQTSLRKLM 172
Cdd:PRK07376  240 KSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVArmYPVFEqfPAVMTVIawtgAITAFLGASIALTQNDIKKGL 319

                          90
                  ....*....|....*
gi 1559461009 173 AYSSINHLGWMLAAM 187
Cdd:PRK07376  320 AYSTISQLGYMVMAM 334
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-287 4.93e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.91  E-value: 4.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   3 NNSSKIVFFSILMMGTLISISANSWLGAWMGLEINLLSFIPLMSDNKLMSTEASLKYFLTQALASSVFLFATIL------ 76
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLiyaktg 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  77 ---------FLLNSNKINSNFFMEMMIFSSLLLKSGSAPFHFWFPNVME------------GLSWLNTLILMTWQKIAPL 135
Cdd:PRK08668  176 tfdfadisqGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSeapqsfsavlsgQLSKLGAYGFLLVLYVLPG 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 136 --MLISYIIFK--PLIITSII----LSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTF---L 204
Cdd:PRK08668  256 tkLFSEFGTYRgvPLFNYILAwlgnISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFnhaL 335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 205 TFTMIFM-----FNMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSqLFLLTFMVLMT 279
Cdd:PRK08668  336 FKGLFFLifaavIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKG-MPITAFMAFFG 414


                  ....*...
gi 1559461009 280 LITLYFYL 287
Cdd:PRK08668  415 SIGSFLYV 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 55-203 1.84e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 39.92  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  55 ASLKYFLTQALASSVFLFATILF---------LLNSNKINSNFFMEMMIFSSLLL----KSGSAPFHFWFPNVMEGLSWL 121
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLyflgggtfdLLELLNLPLPFGVQTWLFLAFFIafavKVPLFPLHTWLPDAHVEAPTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 122 NTLILM-TWQKIA---------PLMLISYIIFKPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAAMYNSN 191
Cdd:TIGR01972 237 GSVILAgVLLKMGtygflrfnlPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFN 316

                         170
                  ....*....|..
gi 1559461009 192 LLWMTYFMFYTF 203
Cdd:TIGR01972 317 ELGISGAVFQMI 328
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 72-186 3.38e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 39.29  E-value: 3.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  72 FATILFLLNSNKINSNFFMEMMIFSSLLLKSGSAPFHFWFPNVMEGLSWLNTLILMTWQKIAPLMLI--SYIIFK----P 145
Cdd:MTH00020  194 FSSVFNMVVSAPSSDITLICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLirSSPLFEqaplA 273

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1559461009 146 LIITSII--LSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAA 186
Cdd:MTH00020  274 LIIVTIVgsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVA 316
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-193 4.36e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.91  E-value: 4.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  55 ASLKYFLTQaLASSVFLFATILFLLNSNKINS-----------NFFMEMMIFSSLLL----KSGSAPFHFWFPNVME--- 116
Cdd:COG1008   162 AAIKFFLYT-LAGSLLMLVAILALYFLAGALTfdiaelaaaplPLTAQLLLFLAFFIafavKVPMFPFHTWLPDAHVeap 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 117 -GLSWLNTLILMtwqKIA---------PLMLISYIIFKPLIITSIILSSLIGALGGLNQTSLRKLMAYSSINHLGWMLAA 186
Cdd:COG1008   241 tAGSVLLAGVLL---KMGgygllrfalPLFPEASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLG 317


                  ....*..
gi 1559461009 187 MYNSNLL 193
Cdd:COG1008   318 IFALNPL 324
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-338 6.20e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.26  E-value: 6.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009   3 NNSSKIVFFSILMM-GTLISISANsWLGAWMGLEINLLSFIPLMSDNKLMSTEASLKYFLTQALASSVFLFATILFLLNS 81
Cdd:PRK06589  114 SSSRFLFFFNLTILiGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYT 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  82 NKINSNF-----------FMEMMIFSSLLLKSGSAPFHFWFPNVM-----------------EGLSWLNTLILMTWQKIA 133
Cdd:PRK06589  193 KTGNLDFvsgglfsknqsIILLLMFIYGIAKTAIFPVHSWLPAAMvahypvsallhavivvkTGLFCIYKILLYIFGLSY 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 134 PLMLISYIIFKPLI-ITSIILSSLIgalgGLNQTSLRKLMAYSSINHLGWMLA--------AMYNSNLLWMTYFMFYTFL 204
Cdd:PRK06589  273 LQRIFAEFNWLIFIpIVSIFYSSLK----ALKTDNIKKILAYSTISQLSLALLsafiltpkALGAAILHLVSHSFAKICL 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 205 TFTMIFMFNMFKTSHVNQLFTLAFHSKTMKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLM----TL 280
Cdd:PRK06589  349 FYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSI 428

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1559461009 281 ITLYFYLRLSYSAFMLNYYENNWMNNSLYKSNYLMIFMMYSFFSSMGLFVMLSLYFLL 338
Cdd:PRK06589  429 LSALYLLKILSSIYKPSLSENSFITKSLPYLMQISVITCCCALTLFYFIQILIREFLA 486
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 92-288 6.51e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.20  E-value: 6.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009  92 MMIFSSLLLKSGSAPFHFWFPNV-MEGLSWLNTLILMTWQKIAPLMLI----------SYIIFKPLIITSIILSSLIGAL 160
Cdd:PRK08676  210 LFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILrlsallrqsgAAEQFSNVLIGLGIFSIAVAAF 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1559461009 161 GGLNQTSLRKLMAYSSINHLGWMLAAMYNSNLLWMTYFMFYTF--------LTFTMIFMFNMFKTSHVNQLFTLAFHSKT 232
Cdd:PRK08676  290 SMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLahslvksgLFFSAGILHRQYRSDRFDRIFDVFRLQPV 369

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1559461009 233 MKFFLFFNLLSLGGLPPFLGFLPKWMVIQSLTENSQLFLLTFMVLMTLIT---LYFYLR 288
Cdd:PRK08676  370 AAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAAssfAIFLLK 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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