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Conserved domains on  [gi|154845337|gb|ABS88256|]
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cytochrome b, partial (mitochondrion) [Eospalax smithii]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00100   7 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00100  87 ASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00100 167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00100 247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00100   7 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00100  87 ASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00100 167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00100 247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-277 1.49e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.83  E-value: 1.49e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   5 LKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMF 84
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  85 FICLFLHVGRGMYYGSYNY---LeTWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGG 161
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 162 FSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LYSDADKIPFHPYYTIKDILGFIIMFLFLMML 236
Cdd:COG1290  179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 154845337 237 VLFSPDmlGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:COG1290  259 AFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-200 4.64e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 278.10  E-value: 4.64e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   3 PLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGAS 82
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  83 MFFICLFLHVGRGMYYGSYN--YLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 200
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
12-198 2.49e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 255.77  E-value: 2.49e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   12 LIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLH 91
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   92 VGRGMYYGSYNYL--ETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATL 169
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 154845337  170 TRFFAFHFILPFIITALVIVHLLFLHETG 198
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00100   7 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00100  87 ASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00100 167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00100 247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00119
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 543.34  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00119   8 SHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00119  88 ASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00119 168 GFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFS 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00119 248 PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
CYTB MTH00131
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 540.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00131   7 THPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00131  87 ASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00131 167 GFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFS 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00131 247 PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00156
cytochrome b; Provisional
 5-277 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 534.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   5 LKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMF 84
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  85 FICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSV 164
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 165 DKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFSPDML 244
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270
                 ....*....|....*....|....*....|...
gi 154845337 245 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
CYTB MTH00074
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 526.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00074   8 THPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00074  88 ASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00074 168 GFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFS 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00074 248 PNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
CYTB MTH00191
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 526.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00191   4 THPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00191  84 ASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00191 164 GFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFS 243

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00191 244 PNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
CYTB MTH00145
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 503.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00145   8 SHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00145  88 ASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00145 168 GFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFF 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00145 248 PNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
CYTB MTH00034
cytochrome b; Validated
 1-277 1.49e-172

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 481.51  E-value: 1.49e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00034   7 SHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00034  87 ASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00034 167 GFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLF 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00034 247 PTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
CYTB MTH00016
cytochrome b; Validated
 1-277 8.44e-171

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 476.86  E-value: 8.44e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00016   8 THPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00016  88 ASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00016 168 GFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLW 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00016 248 PNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
CYTB MTH00224
cytochrome b; Provisional
 1-277 1.99e-148

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 420.48  E-value: 1.99e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   1 SHPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00224   8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00224  88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS 240
Cdd:MTH00224 168 GFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFE 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845337 241 PDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00224 248 PNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
CYTB MTH00022
cytochrome b; Validated
 2-277 1.20e-142

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 405.62  E-value: 1.20e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   2 HPLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGA 81
Cdd:MTH00022   7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  82 SMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGG 161
Cdd:MTH00022  87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 162 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFSP 241
Cdd:MTH00022 167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 154845337 242 DMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00022 247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00053
cytochrome b; Provisional
 3-277 2.30e-139

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 397.54  E-value: 2.30e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   3 PLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGAS 82
Cdd:MTH00053  10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  83 MFFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGF 162
Cdd:MTH00053  90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 163 SVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFSPD 242
Cdd:MTH00053 170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 154845337 243 MLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00053 250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
CYTB MTH00033
cytochrome b; Provisional
 10-277 7.18e-115

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 335.37  E-value: 7.18e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  10 HSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLF 89
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  90 LHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATL 169
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 170 TRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFS--PDMLGDP 247
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                        250       260       270
                 ....*....|....*....|....*....|
gi 154845337 248 DNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRS 282
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-277 1.49e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.83  E-value: 1.49e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   5 LKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMF 84
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  85 FICLFLHVGRGMYYGSYNY---LeTWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGG 161
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 162 FSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LYSDADKIPFHPYYTIKDILGFIIMFLFLMML 236
Cdd:COG1290  179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 154845337 237 VLFSPDmlGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:COG1290  259 AFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
CYTB MTH00086
cytochrome b; Provisional
 6-277 4.83e-105

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 309.18  E-value: 4.83e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   6 KIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFF 85
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  86 ICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVD 165
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 166 KATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGfIIMFLFLMMLVLFSPDMLG 245
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                        250       260       270
                 ....*....|....*....|....*....|..
gi 154845337 246 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-200 4.64e-95

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 278.10  E-value: 4.64e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   3 PLLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGAS 82
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  83 MFFICLFLHVGRGMYYGSYN--YLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 154845337 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 200
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
12-198 2.49e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 255.77  E-value: 2.49e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   12 LIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLH 91
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   92 VGRGMYYGSYNYL--ETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATL 169
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 154845337  170 TRFFAFHFILPFIITALVIVHLLFLHETG 198
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 4-277 4.05e-86

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 261.07  E-value: 4.05e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   4 LLKIINHSLIDLPTPSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASM 83
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  84 FFICLFLHVGRGMYYGSYNYLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFS 163
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 164 VDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLYSD-ADKIPFHPYYTIKDILGFIIMFLFLMMLVLFSPD 242
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 154845337 243 MLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
82-247 4.32e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.09  E-value: 4.32e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337   82 SMFFICLFLHVGRGMYYGSYNYLE--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIW 159
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  160 GGFSVDKATLTRFFAFHF-ILPFIITALVIVHLLFLHETGSNNPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVL 238
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 154845337  239 FSPDMLGDP 247
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 27-202 3.20e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 139.08  E-value: 3.20e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  27 FGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGMYYGSYNYLE- 105
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337 106 -TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATLTRFFAFH-FILPFII 183
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 154845337 184 TALVIVHLLFLHETGSNNP 202
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 18-202 2.62e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 123.29  E-value: 2.62e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  18 PSNISVWWNFGSLLGVCLGLQIITGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGMY 97
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845337  98 YGSYNYLE--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATLTRFFAF 175
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 154845337 176 H-FILPFIITALVIVHLLFLHETGSNNP 202
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 201-277 2.76e-28

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 105.81  E-value: 2.76e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 154845337 201 NPTGLYSDADKIPFHPYYTIKDILGFIIMFLFLMMLVLFSPDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
252-277 1.36e-11

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 59.80  E-value: 1.36e-11
                          10        20
                  ....*....|....*....|....*.
gi 154845337  252 PANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRS 26
petD CHL00058
cytochrome b6/f complex subunit IV
 236-276 8.83e-04

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 38.83  E-value: 8.83e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 154845337 236 LVLFSPDMLGDPdnytpANPLNTPPHIKPEWYFLFAYAILR 276
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILR 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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