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Conserved domains on  [gi|154845299|gb|ABS88237|]
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cytochrome b, partial (mitochondrion) [Eospalax fontanierii baileyi]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00100   7 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00100  87 ASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00100 167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00100 247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00100   7 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00100  87 ASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00100 167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00100 247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-277 3.65e-113

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 331.37  E-value: 3.65e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   5 LKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMF 84
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  85 FICLFLHVGRGMYYGSYNY---LeTWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGG 161
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 162 FSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSNADKIPFHPYYTIKDTLGFIIMFLFLMTL 236
Cdd:COG1290  179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 154845299 237 VLFSPDMleDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:COG1290  259 AFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-200 1.31e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 282.33  E-value: 1.31e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   3 PLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGAS 82
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  83 MFFICLFLHVGRGMYYGSYN--YLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 200
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
12-198 1.52e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 258.85  E-value: 1.52e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   12 LIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLH 91
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   92 VGRGMYYGSYNYL--ETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATL 169
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 154845299  170 TRFFAFHFILPFIITALVIVHLLFLHETG 198
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00100   7 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00100  87 ASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00100 167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00100 247 PDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00119
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 543.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00119   8 SHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00119  88 ASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00119 168 GFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFS 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00119 248 PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
CYTB MTH00131
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 540.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00131   7 THPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00131  87 ASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00131 167 GFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFS 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00131 247 PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00156
cytochrome b; Provisional
 5-277 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 534.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   5 LKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMF 84
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  85 FICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSV 164
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 165 DKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFSPDML 244
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270
                 ....*....|....*....|....*....|...
gi 154845299 245 EDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
CYTB MTH00074
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 527.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00074   8 THPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00074  88 ASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00074 168 GFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFS 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00074 248 PNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
CYTB MTH00191
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 525.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00191   4 THPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00191  84 ASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00191 164 GFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFS 243

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00191 244 PNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
CYTB MTH00145
cytochrome b; Provisional
 1-277 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 505.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00145   8 SHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00145  88 ASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00145 168 GFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFF 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00145 248 PNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
CYTB MTH00034
cytochrome b; Validated
 1-277 1.43e-173

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 483.82  E-value: 1.43e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00034   7 SHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00034  87 ASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00034 167 GFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLF 246

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00034 247 PTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
CYTB MTH00016
cytochrome b; Validated
 1-277 4.23e-171

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 477.63  E-value: 4.23e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00016   8 THPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00016  88 ASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00016 168 GFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLW 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00016 248 PNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
CYTB MTH00224
cytochrome b; Provisional
 1-277 4.89e-150

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 424.33  E-value: 4.89e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   1 SHPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANG 80
Cdd:MTH00224   8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  81 ASMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:MTH00224  88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS 240
Cdd:MTH00224 168 GFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFE 247

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 154845299 241 PDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00224 248 PNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
CYTB MTH00022
cytochrome b; Validated
 2-277 1.04e-142

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 405.62  E-value: 1.04e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   2 HPLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGA 81
Cdd:MTH00022   7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  82 SMFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGG 161
Cdd:MTH00022  87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 162 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFSP 241
Cdd:MTH00022 167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 154845299 242 DMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00022 247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00053
cytochrome b; Provisional
 3-277 1.37e-137

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 392.92  E-value: 1.37e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   3 PLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGAS 82
Cdd:MTH00053  10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  83 MFFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGF 162
Cdd:MTH00053  90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 163 SVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFSPD 242
Cdd:MTH00053 170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 154845299 243 MLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00053 250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
CYTB MTH00033
cytochrome b; Provisional
 10-277 6.58e-115

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 335.37  E-value: 6.58e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  10 HSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLF 89
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  90 LHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATL 169
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 170 TRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFS--PDMLEDP 247
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                        250       260       270
                 ....*....|....*....|....*....|
gi 154845299 248 DNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRS 282
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-277 3.65e-113

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 331.37  E-value: 3.65e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   5 LKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMF 84
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  85 FICLFLHVGRGMYYGSYNY---LeTWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGG 161
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 162 FSVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPTG----LNSNADKIPFHPYYTIKDTLGFIIMFLFLMTL 236
Cdd:COG1290  179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 154845299 237 VLFSPDMleDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:COG1290  259 AFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
CYTB MTH00086
cytochrome b; Provisional
 6-277 3.51e-104

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 307.25  E-value: 3.51e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   6 KIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFF 85
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  86 ICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVD 165
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 166 KATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGfIIMFLFLMTLVLFSPDMLE 245
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                        250       260       270
                 ....*....|....*....|....*....|..
gi 154845299 246 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-200 1.31e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 282.33  E-value: 1.31e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   3 PLLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGAS 82
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  83 MFFICLFLHVGRGMYYGSYN--YLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWG 160
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 154845299 161 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 200
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
12-198 1.52e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 258.85  E-value: 1.52e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   12 LIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLH 91
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   92 VGRGMYYGSYNYL--ETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATL 169
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 154845299  170 TRFFAFHFILPFIITALVIVHLLFLHETG 198
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 4-277 8.03e-86

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 260.30  E-value: 8.03e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   4 LLKIINHSLIDLPAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASM 83
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  84 FFICLFLHVGRGMYYGSYNYLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFS 163
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299 164 VDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPTGL-NSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFSPD 242
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 154845299 243 MLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
82-247 5.97e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 157.02  E-value: 5.97e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299   82 SMFFICLFLHVGRGMYYGSYNYLE--TWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIW 159
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  160 GGFSVDKATLTRFFAFHF-ILPFIITALVIVHLLFLHETGSNNPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVL 238
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 154845299  239 FSPDMLEDP 247
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 16-202 1.10e-41

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 142.93  E-value: 1.10e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  16 PAPSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLHVGRG 95
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  96 MYYGSYNYLE--TWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATLTRFF 173
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|
gi 154845299 174 AFH-FILPFIITALVIVHLLFLHETGSNNP 202
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 18-202 9.75e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 124.45  E-value: 9.75e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  18 PSNISVWWNFGSLLGVCLGLQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGMY 97
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154845299  98 YGSYNYLE--TWNIGVILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTSLVEWIWGGFSVDKATLTRFFAF 175
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 154845299 176 H-FILPFIITALVIVHLLFLHETGSNNP 202
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 201-277 2.59e-28

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 105.81  E-value: 2.59e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 154845299 201 NPTGLNSNADKIPFHPYYTIKDTLGFIIMFLFLMTLVLFSPDMLEDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
252-277 9.10e-12

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 60.18  E-value: 9.10e-12
                          10        20
                  ....*....|....*....|....*.
gi 154845299  252 PANPLNTPPHIKPEWYFLFAYAILRS 277
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRS 26
petD CHL00058
cytochrome b6/f complex subunit IV
 252-276 6.37e-03

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 36.52  E-value: 6.37e-03
                         10        20
                 ....*....|....*....|....*
gi 154845299 252 PANPLNTPPHIKPEWYFLFAYAILR 276
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILR 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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