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Conserved domains on  [gi|1546415422|ref|WP_126657642|]
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MULTISPECIES: PRC-barrel domain-containing protein [Lysinibacillus]

Protein Classification

PRC-barrel domain-containing protein( domain architecture ID 10004821)

PRC-barrel domain-containing protein similar to Methanocaldococcus jannaschii protein MJ1118 and protein MJ0916

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlmC COG1873
Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function ...
 3-73 6.75e-07

Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function prediction only];


:

Pssm-ID: 441477  Cd Length: 70  Bit Score: 42.11  E-value: 6.75e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1546415422  3 FSAVQQKEIIEAgNGRFIGYIIDAEVCEKTGNIIAFLVAEPKKFMSFLQSDEHVRKVLISDILVVGKDVIL 73
Cdd:COG1873    1 ASELIGKEVITS-DGERLGKVKDVEIDLETGKIEALVVPPGNKFFGFLGDGEKEVVIPWEAVKKIGDDVIL 70
 
Name Accession Description Interval E-value
YlmC COG1873
Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function ...
 3-73 6.75e-07

Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function prediction only];


Pssm-ID: 441477  Cd Length: 70  Bit Score: 42.11  E-value: 6.75e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1546415422  3 FSAVQQKEIIEAgNGRFIGYIIDAEVCEKTGNIIAFLVAEPKKFMSFLQSDEHVRKVLISDILVVGKDVIL 73
Cdd:COG1873    1 ASELIGKEVITS-DGERLGKVKDVEIDLETGKIEALVVPPGNKFFGFLGDGEKEVVIPWEAVKKIGDDVIL 70
 
Name Accession Description Interval E-value
YlmC COG1873
Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function ...
 3-73 6.75e-07

Sporulation protein YlmC, YlmC/YmxH family, contains PRC-barrel domain [General function prediction only];


Pssm-ID: 441477  Cd Length: 70  Bit Score: 42.11  E-value: 6.75e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1546415422  3 FSAVQQKEIIEAgNGRFIGYIIDAEVCEKTGNIIAFLVAEPKKFMSFLQSDEHVRKVLISDILVVGKDVIL 73
Cdd:COG1873    1 ASELIGKEVITS-DGERLGKVKDVEIDLETGKIEALVVPPGNKFFGFLGDGEKEVVIPWEAVKKIGDDVIL 70
YrrD COG3881
Uncharacterized conserved protein YrrD, contains PRC-barrel domain [Function unknown];
15-76 5.76e-05

Uncharacterized conserved protein YrrD, contains PRC-barrel domain [Function unknown];


Pssm-ID: 443089 [Multi-domain]  Cd Length: 161  Bit Score: 38.71  E-value: 5.76e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1546415422  15 GNGRFIGYIIDAEVCEKTGNIIAFLVAEpkkfmSFLQSDEHVRKVL-ISDILVVGKDVILVRE 76
Cdd:COG3881   101 EKGELLGTVEDVYFDEETGKIVGYEISD-----GLLADLLKGRKILpAEQIVTIGKDVIIVPE 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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