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Conserved domains on  [gi|154550243|gb|ABS83430|]
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cytochrome b, partial (mitochondrion) [Lepilemur aeeclis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-117 8.37e-82

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 244.16  E-value: 8.37e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00100  11 MKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMF 90

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00100  91 FICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATA 127
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-117 8.37e-82

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 244.16  E-value: 8.37e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00100  11 MKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMF 90

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00100  91 FICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATA 127
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-117 2.02e-46

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 148.29  E-value: 2.02e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:cd00284    3 LIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMF 82

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 154550243  81 FLCLFIHVGRGLYYGSFV--LLETWNIGIMLLFSVMATA 117
Cdd:cd00284   83 FLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATA 121
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
8-117 3.49e-40

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 132.12  E-value: 3.49e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243    8 LIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFFLCLFIH 87
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 154550243   88 VGRGLYYGSF--VLLETWNIGIMLLFSVMATA 117
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTA 112
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
6-117 1.42e-35

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 124.90  E-value: 1.42e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   6 NSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFFLCLF 85
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  86 IHVGRGLYYGSF-----VLletWNIGIMLLFSVMATA 117
Cdd:COG1290  105 LHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEA 138
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-117 8.37e-82

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 244.16  E-value: 8.37e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00100  11 MKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMF 90

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00100  91 FICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATA 127
CYTB MTH00074
cytochrome b; Provisional
 1-117 1.55e-72

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 220.32  E-value: 1.55e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00074  12 LKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFF 91

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00074  92 FICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATA 128
CYTB MTH00156
cytochrome b; Provisional
 1-117 2.18e-72

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 219.27  E-value: 2.18e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATA 117
CYTB MTH00119
cytochrome b; Provisional
 1-117 3.85e-71

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 216.69  E-value: 3.85e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00119  12 LKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMF 91

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00119  92 FICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128
CYTB MTH00131
cytochrome b; Provisional
 1-117 2.08e-69

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 212.20  E-value: 2.08e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00131  11 LKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFF 90

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00131  91 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTA 127
CYTB MTH00191
cytochrome b; Provisional
 1-117 5.76e-68

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 208.23  E-value: 5.76e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00191   8 LKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFF 87

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00191  88 FICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATA 124
CYTB MTH00145
cytochrome b; Provisional
 2-117 8.16e-64

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 197.82  E-value: 8.16e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   2 KIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFF 81
Cdd:MTH00145  13 KVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFF 92

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 154550243  82 LCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00145  93 ICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTA 128
CYTB MTH00034
cytochrome b; Validated
 1-117 5.08e-63

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 196.08  E-value: 5.08e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00034  11 FKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLF 90

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00034  91 FICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTA 127
CYTB MTH00016
cytochrome b; Validated
 1-117 3.68e-62

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 193.74  E-value: 3.68e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00016  12 IKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFF 91

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00016  92 FICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATA 128
CYTB MTH00022
cytochrome b; Validated
 1-117 8.99e-55

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 174.89  E-value: 8.99e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00022  10 LSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLF 89

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00022  90 FLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATA 126
CYTB MTH00224
cytochrome b; Provisional
 1-117 5.11e-53

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 170.49  E-value: 5.11e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:MTH00224  12 IKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMF 91

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  81 FLCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00224  92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATA 128
CYTB MTH00053
cytochrome b; Provisional
 3-117 4.68e-52

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 167.96  E-value: 4.68e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   3 IINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFFL 82
Cdd:MTH00053  14 LVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFL 93

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 154550243  83 CLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00053  94 CVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTA 128
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-117 2.02e-46

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 148.29  E-value: 2.02e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   1 MKIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLF 80
Cdd:cd00284    3 LIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMF 82

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 154550243  81 FLCLFIHVGRGLYYGSFV--LLETWNIGIMLLFSVMATA 117
Cdd:cd00284   83 FLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATA 121
CYTB MTH00033
cytochrome b; Provisional
 6-117 1.56e-41

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 140.46  E-value: 1.56e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   6 NSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFFLCLF 85
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110
                 ....*....|....*....|....*....|..
gi 154550243  86 IHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTA 124
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
8-117 3.49e-40

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 132.12  E-value: 3.49e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243    8 LIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFFLCLFIH 87
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|..
gi 154550243   88 VGRGLYYGSF--VLLETWNIGIMLLFSVMATA 117
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTA 112
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
6-117 1.42e-35

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 124.90  E-value: 1.42e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   6 NSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFFLCLF 85
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 154550243  86 IHVGRGLYYGSF-----VLletWNIGIMLLFSVMATA 117
Cdd:COG1290  105 LHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEA 138
CYTB MTH00086
cytochrome b; Provisional
 2-117 5.08e-31

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 112.34  E-value: 5.08e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   2 KIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFF 81
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 154550243  82 LCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEA 116
CYTB MTH00046
cytochrome b; Validated
 2-117 2.28e-22

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 89.27  E-value: 2.28e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243   2 KIINNSLIDLPAPSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFF 81
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 154550243  82 LCLFIHVGRGLYYGSFVLLETWNIGIMLLFSVMATA 117
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEA 118
PRK03735 PRK03735
cytochrome b6; Provisional
 23-115 3.79e-16

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 70.90  E-value: 3.79e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243  23 FGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFFLCLFIHVGRGLYYGSFVLLE- 101
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90
                 ....*....|....*
gi 154550243 102 -TWNIGIMLLFSVMA 115
Cdd:PRK03735 124 lNWVVGVLIFFVTVG 138
petB CHL00070
cytochrome b6
 14-109 1.20e-11

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 58.58  E-value: 1.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154550243  14 PSNISSLWNFGSLLGACLTIQIITGLFLAMHYTADTTTAFSSVTHICRDVNYGWTIRYLHANGASLFFLCLFIHVGRGLY 93
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90
                 ....*....|....*...
gi 154550243  94 YGSFVLLE--TWNIGIML 109
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVL 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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