LPXTG-anchored aggregation substance [Enterococcus faecalis]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||||||||||||||||
| Agg_substance super family | cl41491 | LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
1-1292 | 0e+00 | ||||||||||||||||||
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain. The actual alignment was detected with superfamily member NF033875: Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 2479.16 E-value: 0e+00
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| Name | Accession | Description | Interval | E-value | ||||||||||||||||||
| Agg_substance | NF033875 | LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
1-1292 | 0e+00 | ||||||||||||||||||
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain. Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 2479.16 E-value: 0e+00
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| GbpC | pfam08363 | Glucan-binding protein C; This domain is found in the Streptococcus Glucan-binding protein C ... |
243-534 | 2.23e-70 | ||||||||||||||||||
Glucan-binding protein C; This domain is found in the Streptococcus Glucan-binding protein C (GbpC) and also in surface protein antigen (Spa)-family proteins which show sequence similarity to GbpC. Pssm-ID: 400594 [Multi-domain] Cd Length: 260 Bit Score: 236.33 E-value: 2.23e-70
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| isopep_sspB_C2 | TIGR04228 | adhesin isopeptide-forming domain, sspB-C2 type; This domain has a conserved Lys (position 3 ... |
907-1057 | 2.09e-29 | ||||||||||||||||||
adhesin isopeptide-forming domain, sspB-C2 type; This domain has a conserved Lys (position 3 in seed alignment) and Asn at 177 that form an intramolecular isopeptide bond. The Asp (or Glu) at position 59 Pssm-ID: 275068 [Multi-domain] Cd Length: 173 Bit Score: 115.47 E-value: 2.09e-29
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| DR0291 | COG1579 | Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
153-244 | 1.26e-06 | ||||||||||||||||||
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only]; Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.08 E-value: 1.26e-06
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| PRK13108 | PRK13108 | prolipoprotein diacylglyceryl transferase; Reviewed |
119-257 | 1.87e-04 | ||||||||||||||||||
prolipoprotein diacylglyceryl transferase; Reviewed Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 45.74 E-value: 1.87e-04
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| Name | Accession | Description | Interval | E-value | ||||||||||||||||||
| Agg_substance | NF033875 | LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
1-1292 | 0e+00 | ||||||||||||||||||
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain. Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 2479.16 E-value: 0e+00
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| GbpC | pfam08363 | Glucan-binding protein C; This domain is found in the Streptococcus Glucan-binding protein C ... |
243-534 | 2.23e-70 | ||||||||||||||||||
Glucan-binding protein C; This domain is found in the Streptococcus Glucan-binding protein C (GbpC) and also in surface protein antigen (Spa)-family proteins which show sequence similarity to GbpC. Pssm-ID: 400594 [Multi-domain] Cd Length: 260 Bit Score: 236.33 E-value: 2.23e-70
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| Antigen_C | pfam16364 | Cell surface antigen C-terminus; This repeated domain is found at the C-terminus of cell ... |
1060-1219 | 7.25e-41 | ||||||||||||||||||
Cell surface antigen C-terminus; This repeated domain is found at the C-terminus of cell surface antigens. In the Streptococcus mutans antigen I/II there are three repeats of this domain, a cleft between the first two of these forms a binding site for the human salivary agglutinin (SAG). Pssm-ID: 435302 [Multi-domain] Cd Length: 171 Bit Score: 148.32 E-value: 7.25e-41
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| Antigen_C | pfam16364 | Cell surface antigen C-terminus; This repeated domain is found at the C-terminus of cell ... |
740-902 | 8.92e-33 | ||||||||||||||||||
Cell surface antigen C-terminus; This repeated domain is found at the C-terminus of cell surface antigens. In the Streptococcus mutans antigen I/II there are three repeats of this domain, a cleft between the first two of these forms a binding site for the human salivary agglutinin (SAG). Pssm-ID: 435302 [Multi-domain] Cd Length: 171 Bit Score: 125.21 E-value: 8.92e-33
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| AgI_II_C2 | pfam17998 | Cell surface antigen I/II C2 terminal domain; This is the second domain (C2) located in the ... |
907-1052 | 4.62e-30 | ||||||||||||||||||
Cell surface antigen I/II C2 terminal domain; This is the second domain (C2) located in the C-terminal region found in antigen I/II type adhesin protein AspA from S. pyogenes. Together with C3, these two domains form an elongated structure, each domain adopts the DEv-IgG fold. Similar to the classical IgG folds, it is comprised of two major antiparallel beta-sheets, designated ABED and CFG. For the C2-domain, there are two additional strands on the CFG sheet. Furthermore, sheets ABED and CFG are interconnected by several cross-connecting loops and one alpha-helix (DH1). The side chains of D982 and N996 in the C2-domain are involved in hydrogen bonding with the side chains of R1264 and N1295 in the C3 domain. Main chain hydrogen bonding can also be observed between S992 in C2 and N1189/G1191 in C3, furthermore stabilizing the interaction between the domains. The C2 domain contains one bound metal ion, modeled as Ca2+, and both the C2- and C3-domains are stabilized by conserved isopeptide bonds, which connect the beta-sheets of the central DEv-IgG motifs.Other members of this family include Major cell-surface adhesin PAc from Streptococcus mutans and SspB from Streptococcus gordonii. Pssm-ID: 465609 [Multi-domain] Cd Length: 180 Bit Score: 117.96 E-value: 4.62e-30
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| isopep_sspB_C2 | TIGR04228 | adhesin isopeptide-forming domain, sspB-C2 type; This domain has a conserved Lys (position 3 ... |
907-1057 | 2.09e-29 | ||||||||||||||||||
adhesin isopeptide-forming domain, sspB-C2 type; This domain has a conserved Lys (position 3 in seed alignment) and Asn at 177 that form an intramolecular isopeptide bond. The Asp (or Glu) at position 59 Pssm-ID: 275068 [Multi-domain] Cd Length: 173 Bit Score: 115.47 E-value: 2.09e-29
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| AgI_II_C2 | pfam17998 | Cell surface antigen I/II C2 terminal domain; This is the second domain (C2) located in the ... |
575-732 | 1.64e-20 | ||||||||||||||||||
Cell surface antigen I/II C2 terminal domain; This is the second domain (C2) located in the C-terminal region found in antigen I/II type adhesin protein AspA from S. pyogenes. Together with C3, these two domains form an elongated structure, each domain adopts the DEv-IgG fold. Similar to the classical IgG folds, it is comprised of two major antiparallel beta-sheets, designated ABED and CFG. For the C2-domain, there are two additional strands on the CFG sheet. Furthermore, sheets ABED and CFG are interconnected by several cross-connecting loops and one alpha-helix (DH1). The side chains of D982 and N996 in the C2-domain are involved in hydrogen bonding with the side chains of R1264 and N1295 in the C3 domain. Main chain hydrogen bonding can also be observed between S992 in C2 and N1189/G1191 in C3, furthermore stabilizing the interaction between the domains. The C2 domain contains one bound metal ion, modeled as Ca2+, and both the C2- and C3-domains are stabilized by conserved isopeptide bonds, which connect the beta-sheets of the central DEv-IgG motifs.Other members of this family include Major cell-surface adhesin PAc from Streptococcus mutans and SspB from Streptococcus gordonii. Pssm-ID: 465609 [Multi-domain] Cd Length: 180 Bit Score: 90.22 E-value: 1.64e-20
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| Adhesin_P1_N | pfam18652 | Adhesin P1 N-terminal domain; The cariogenic bacterium Streptococcus mutans uses adhesin P1 to ... |
137-242 | 6.19e-20 | ||||||||||||||||||
Adhesin P1 N-terminal domain; The cariogenic bacterium Streptococcus mutans uses adhesin P1 to adhere to tooth surfaces, extracellular matrix components, and other bacteria. The N terminus forms a stabilizing scaffold by wrapping behind the base of P1's elongated stalk and physically 'locking' it into place. It is suggested that the N-terminal has such a pronounced impact on P1 immunogenicity, antigenicity, folding, stability, and adherent function. Pssm-ID: 465829 [Multi-domain] Cd Length: 106 Bit Score: 86.26 E-value: 6.19e-20
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| isopep_sspB_C2 | TIGR04228 | adhesin isopeptide-forming domain, sspB-C2 type; This domain has a conserved Lys (position 3 ... |
575-737 | 3.90e-09 | ||||||||||||||||||
adhesin isopeptide-forming domain, sspB-C2 type; This domain has a conserved Lys (position 3 in seed alignment) and Asn at 177 that form an intramolecular isopeptide bond. The Asp (or Glu) at position 59 Pssm-ID: 275068 [Multi-domain] Cd Length: 173 Bit Score: 57.31 E-value: 3.90e-09
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| Gram_pos_anchor | pfam00746 | LPXTG cell wall anchor motif; |
1249-1292 | 3.45e-08 | ||||||||||||||||||
LPXTG cell wall anchor motif; Pssm-ID: 366278 [Multi-domain] Cd Length: 43 Bit Score: 50.62 E-value: 3.45e-08
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
99-248 | 8.55e-08 | ||||||||||||||||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 55.62 E-value: 8.55e-08
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| KxYKxGKxW_sig | pfam19258 | KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as ... |
6-44 | 1.51e-07 | ||||||||||||||||||
KxYKxGKxW signal peptide; This entry represents a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK signal peptide. Pssm-ID: 466014 [Multi-domain] Cd Length: 41 Bit Score: 48.64 E-value: 1.51e-07
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| DR0291 | COG1579 | Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
153-244 | 1.26e-06 | ||||||||||||||||||
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only]; Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.08 E-value: 1.26e-06
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| LPXTG_anchor | TIGR01167 | LPXTG-motif cell wall anchor domain; This model describes the LPXTG motif-containing region ... |
1256-1290 | 1.58e-06 | ||||||||||||||||||
LPXTG-motif cell wall anchor domain; This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other] Pssm-ID: 273478 [Multi-domain] Cd Length: 34 Bit Score: 45.54 E-value: 1.58e-06
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| TPR_MLP1_2 | pfam07926 | TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ... |
191-248 | 4.86e-05 | ||||||||||||||||||
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity. Pssm-ID: 462316 [Multi-domain] Cd Length: 129 Bit Score: 44.17 E-value: 4.86e-05
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
85-253 | 4.89e-05 | ||||||||||||||||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 47.15 E-value: 4.89e-05
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| KxYKxGKxW | TIGR03715 | KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as ... |
8-30 | 8.91e-05 | ||||||||||||||||||
KxYKxGKxW signal peptide; This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus. Pssm-ID: 274741 [Multi-domain] Cd Length: 23 Bit Score: 40.45 E-value: 8.91e-05
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| PRK13108 | PRK13108 | prolipoprotein diacylglyceryl transferase; Reviewed |
119-257 | 1.87e-04 | ||||||||||||||||||
prolipoprotein diacylglyceryl transferase; Reviewed Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 45.74 E-value: 1.87e-04
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| YqiK | COG2268 | Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
187-249 | 3.27e-04 | ||||||||||||||||||
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 44.86 E-value: 3.27e-04
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| rne | PRK10811 | ribonuclease E; Reviewed |
18-176 | 4.20e-04 | ||||||||||||||||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 45.03 E-value: 4.20e-04
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| CwlO1 | COG3883 | Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
173-237 | 7.87e-04 | ||||||||||||||||||
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown]; Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 7.87e-04
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| tolA | PRK09510 | cell envelope integrity inner membrane protein TolA; Provisional |
187-241 | 8.40e-04 | ||||||||||||||||||
cell envelope integrity inner membrane protein TolA; Provisional Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 43.26 E-value: 8.40e-04
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| ERM_helical | pfam20492 | Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related ... |
189-243 | 1.81e-03 | ||||||||||||||||||
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related proteins, ezrin, radixin and moesin. Ezrin was first identified as a constituent of microvilli, radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions, and moesin as a heparin binding protein. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain, an extended alpha-helical domain and a charged C-terminal domain (pfam00769). Ezrin, radixin and merlin also contain a polyproline linker region between the helical and C-terminal domains. The N-terminal domain is highly conserved and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily, designated the FERM domain. ERM proteins crosslink actin filaments with plasma membranes. They co-localize with CD44 at actin filament plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains. This is the alpha-helical domain, which is involved in intramolecular masking of protein-protein interaction sites, regulating the activity of this proteins. Pssm-ID: 466641 [Multi-domain] Cd Length: 120 Bit Score: 39.52 E-value: 1.81e-03
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| SMC_prok_A | TIGR02169 | chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
180-248 | 2.33e-03 | ||||||||||||||||||
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 2.33e-03
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| DR0291 | COG1579 | Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
185-244 | 3.45e-03 | ||||||||||||||||||
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only]; Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 3.45e-03
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| tolA | PRK09510 | cell envelope integrity inner membrane protein TolA; Provisional |
171-241 | 5.17e-03 | ||||||||||||||||||
cell envelope integrity inner membrane protein TolA; Provisional Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.95 E-value: 5.17e-03
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| tolA | PRK09510 | cell envelope integrity inner membrane protein TolA; Provisional |
187-241 | 5.44e-03 | ||||||||||||||||||
cell envelope integrity inner membrane protein TolA; Provisional Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.56 E-value: 5.44e-03
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| Nnf1 | pfam03980 | Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is ... |
153-220 | 5.57e-03 | ||||||||||||||||||
Nnf1; NNF1 is an essential yeast gene that is necessary for chromosome segregation. It is associated with the spindle poles and forms part of a kinetochore subcomplex called MIND. Pssm-ID: 461118 Cd Length: 103 Bit Score: 37.61 E-value: 5.57e-03
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| ClpA | COG0542 | ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
184-255 | 7.17e-03 | ||||||||||||||||||
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 7.17e-03
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
159-241 | 7.96e-03 | ||||||||||||||||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 40.21 E-value: 7.96e-03
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| YqiK | COG2268 | Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
188-241 | 8.03e-03 | ||||||||||||||||||
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 40.24 E-value: 8.03e-03
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| YqiK | COG2268 | Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
155-244 | 8.75e-03 | ||||||||||||||||||
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 40.24 E-value: 8.75e-03
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