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Conserved domains on  [gi|1540347280]
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Chain F, Complement component C8 alpha chain

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MACPF smart00457
membrane-attack complex / perforin;
259-462 2.16e-63

membrane-attack complex / perforin;


:

Pssm-ID: 214671  Cd Length: 195  Bit Score: 206.13  E-value: 2.16e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280  259 FTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGIT 338
Cdd:smart00457   1 FLVARDTVRNRLYSVKLDELPLALEFLKALRDLPDTYNRGAYARFIDDYGTHYITSATLGGEYSLLLVLDKESLERKGLT 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280  339 SRDITTCFGGSLgiqyedkINVGGGLSGDHCKKFGGGKTERARkaMAVEDIISRVRGGSSGWSGGLAQNRST--ITYRSW 416
Cdd:smart00457  81 SEDISKCLAGSS-------NSFAGSVSAEHCLQSSSYIKYLST--SLRRESHTQVLGGHVTVLCDLLRGPSSnsLDFSDW 151

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1540347280  417 GRSLKYNPVVIDFEMQPIHEVLRHTSlgPLEAKRQNLRRALDQYLM 462
Cdd:smart00457 152 AESVPNEPVLIDVSLAPIYELLPPNP--ELSQKREALRQALRSYLK 195
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 66-100 1.23e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.97  E-value: 1.23e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1540347280  66 CGQD-FQCKeTGRCLKRHLVCNGDQDCLDGSDEDDC 100
Cdd:cd00112     1 CPPNeFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 521-554 7.80e-07

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


:

Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 46.04  E-value: 7.80e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1540347280  521 CRAGIQERRRECDNPAPQNGGASCPGRKVQTQAC 554
Cdd:smart00209  14 CGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRAC 47
TSP1_spondin super family cl46269
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 9-44 3.23e-04

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


The actual alignment was detected with superfamily member pfam19028:

Pssm-ID: 480609  Cd Length: 52  Bit Score: 38.80  E-value: 3.23e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1540347280   9 CQLSNWSEWTDC-FPCQD-KKYRHRSLLQPNKFGGTIC 44
Cdd:pfam19028   1 CVVSEWSEWSECsVTCGGgVQTRTRTVIVEPQNGGRPC 38
 
Name Accession Description Interval E-value
MACPF smart00457
membrane-attack complex / perforin;
259-462 2.16e-63

membrane-attack complex / perforin;


Pssm-ID: 214671  Cd Length: 195  Bit Score: 206.13  E-value: 2.16e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280  259 FTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGIT 338
Cdd:smart00457   1 FLVARDTVRNRLYSVKLDELPLALEFLKALRDLPDTYNRGAYARFIDDYGTHYITSATLGGEYSLLLVLDKESLERKGLT 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280  339 SRDITTCFGGSLgiqyedkINVGGGLSGDHCKKFGGGKTERARkaMAVEDIISRVRGGSSGWSGGLAQNRST--ITYRSW 416
Cdd:smart00457  81 SEDISKCLAGSS-------NSFAGSVSAEHCLQSSSYIKYLST--SLRRESHTQVLGGHVTVLCDLLRGPSSnsLDFSDW 151

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1540347280  417 GRSLKYNPVVIDFEMQPIHEVLRHTSlgPLEAKRQNLRRALDQYLM 462
Cdd:smart00457 152 AESVPNEPVLIDVSLAPIYELLPPNP--ELSQKREALRQALRSYLK 195
MACPF pfam01823
MAC/Perforin domain; The membrane-attack complex (MAC) of the complement system forms ...
 237-460 1.09e-49

MAC/Perforin domain; The membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Freshly activated C5b binds to C6 to form a C5b-6 complex, then to C7 forming the C5b-7 complex. The C5b-7 complex binds to C8, which is composed of three chains (alpha, beta, and gamma), thus forming the C5b-8 complex. C5b-8 subsequently binds to C9 and acts as a catalyst in the polymerization of C9. Active MAC has a subunit composition of C5b-C6-C7-C8-C9{n}. Perforin is a protein found in cytolytic T-cell and killer cells. In the presence of calcium, perforin polymerizes into transmembrane tubules and is capable of lysing, non-specifically, a variety of target cells. There are a number of regions of similarity in the sequences of complement components C6, C7, C8-alpha, C8-beta, C9 and perforin. The X-ray crystal structure of a MACPF domain reveals that it shares a common fold with bacterial cholesterol dependent cytolysins (pfam01289) such as perfringolysin O. Three key pieces of evidence suggests that MACPF domains and CDCs are homologous: Functional similarity (pore formation), conservation of three glycine residues at a hinge in both families and conservation of a complex core fold.


Pssm-ID: 460349  Cd Length: 211  Bit Score: 170.67  E-value: 1.09e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280 237 VSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKM-RKDDIMLDEGMLQSLMELPDQYNYGM---YAKFINDYGTHYI 312
Cdd:pfam01823   1 GSFSASSEFKKMSDKSKQKKKSLIISKSTCSLYQFTLkRSNKLQLSDEFLQALSDLPDNYDYAAkatYIQFFDKYGTHYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280 313 TSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLGIQYedkinvgGGLSGDHCKKFGGGKTERARKAMAVEDIISR 392
Cdd:pfam01823  81 TSVTLGGKIVYVLKLDKSQLEDLKLKGEDVKICLSASAGASI-------GSVNLKGCSKNSSSTKEKKSFNQEIESSITL 153

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1540347280 393 VRGGSSGWSGglaqnRSTITYRSWGRSLKYNPVVIDFEMQPIHEVLRhtslgPLEAKRQNLRRALDQY 460
Cdd:pfam01823 154 VIGGTPESID-----DDSKTYSDWAESVKDNPMPIDFELTPISELLK-----GVPLKKENLRKALEEY 211
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 66-100 1.23e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.97  E-value: 1.23e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1540347280  66 CGQD-FQCKeTGRCLKRHLVCNGDQDCLDGSDEDDC 100
Cdd:cd00112     1 CPPNeFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
65-100 1.99e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 47.24  E-value: 1.99e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1540347280  65 QCGQD-FQCkETGRCLKRHLVCNGDQDCLDGSDEDDC 100
Cdd:pfam00057   2 TCSPNeFQC-GSGECIPRSWVCDGDPDCGDGSDEENC 37
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 521-554 7.80e-07

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 46.04  E-value: 7.80e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1540347280  521 CRAGIQERRRECDNPAPQNGGASCPGRKVQTQAC 554
Cdd:smart00209  14 CGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRAC 47
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 65-97 2.04e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.16  E-value: 2.04e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1540347280   65 QCGQD-FQCKeTGRCLKRHLVCNGDQDCLDGSDE 97
Cdd:smart00192   1 TCPPGeFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 9-44 3.23e-04

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 38.80  E-value: 3.23e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1540347280   9 CQLSNWSEWTDC-FPCQD-KKYRHRSLLQPNKFGGTIC 44
Cdd:pfam19028   1 CVVSEWSEWSECsVTCGGgVQTRTRTVIVEPQNGGRPC 38
TSP_1 pfam00090
Thrombospondin type 1 domain;
521-554 3.66e-04

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 38.55  E-value: 3.66e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1540347280 521 CRAGIQERRRECDNPAPqnGGASCPGRKVQTQAC 554
Cdd:pfam00090  13 CGKGIQVRQRTCKSPFP--GGEPCTGDDIETQAC 44
 
Name Accession Description Interval E-value
MACPF smart00457
membrane-attack complex / perforin;
259-462 2.16e-63

membrane-attack complex / perforin;


Pssm-ID: 214671  Cd Length: 195  Bit Score: 206.13  E-value: 2.16e-63
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280  259 FTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGIT 338
Cdd:smart00457   1 FLVARDTVRNRLYSVKLDELPLALEFLKALRDLPDTYNRGAYARFIDDYGTHYITSATLGGEYSLLLVLDKESLERKGLT 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280  339 SRDITTCFGGSLgiqyedkINVGGGLSGDHCKKFGGGKTERARkaMAVEDIISRVRGGSSGWSGGLAQNRST--ITYRSW 416
Cdd:smart00457  81 SEDISKCLAGSS-------NSFAGSVSAEHCLQSSSYIKYLST--SLRRESHTQVLGGHVTVLCDLLRGPSSnsLDFSDW 151

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1540347280  417 GRSLKYNPVVIDFEMQPIHEVLRHTSlgPLEAKRQNLRRALDQYLM 462
Cdd:smart00457 152 AESVPNEPVLIDVSLAPIYELLPPNP--ELSQKREALRQALRSYLK 195
MACPF pfam01823
MAC/Perforin domain; The membrane-attack complex (MAC) of the complement system forms ...
 237-460 1.09e-49

MAC/Perforin domain; The membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Freshly activated C5b binds to C6 to form a C5b-6 complex, then to C7 forming the C5b-7 complex. The C5b-7 complex binds to C8, which is composed of three chains (alpha, beta, and gamma), thus forming the C5b-8 complex. C5b-8 subsequently binds to C9 and acts as a catalyst in the polymerization of C9. Active MAC has a subunit composition of C5b-C6-C7-C8-C9{n}. Perforin is a protein found in cytolytic T-cell and killer cells. In the presence of calcium, perforin polymerizes into transmembrane tubules and is capable of lysing, non-specifically, a variety of target cells. There are a number of regions of similarity in the sequences of complement components C6, C7, C8-alpha, C8-beta, C9 and perforin. The X-ray crystal structure of a MACPF domain reveals that it shares a common fold with bacterial cholesterol dependent cytolysins (pfam01289) such as perfringolysin O. Three key pieces of evidence suggests that MACPF domains and CDCs are homologous: Functional similarity (pore formation), conservation of three glycine residues at a hinge in both families and conservation of a complex core fold.


Pssm-ID: 460349  Cd Length: 211  Bit Score: 170.67  E-value: 1.09e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280 237 VSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKM-RKDDIMLDEGMLQSLMELPDQYNYGM---YAKFINDYGTHYI 312
Cdd:pfam01823   1 GSFSASSEFKKMSDKSKQKKKSLIISKSTCSLYQFTLkRSNKLQLSDEFLQALSDLPDNYDYAAkatYIQFFDKYGTHYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1540347280 313 TSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLGIQYedkinvgGGLSGDHCKKFGGGKTERARKAMAVEDIISR 392
Cdd:pfam01823  81 TSVTLGGKIVYVLKLDKSQLEDLKLKGEDVKICLSASAGASI-------GSVNLKGCSKNSSSTKEKKSFNQEIESSITL 153

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1540347280 393 VRGGSSGWSGglaqnRSTITYRSWGRSLKYNPVVIDFEMQPIHEVLRhtslgPLEAKRQNLRRALDQY 460
Cdd:pfam01823 154 VIGGTPESID-----DDSKTYSDWAESVKDNPMPIDFELTPISELLK-----GVPLKKENLRKALEEY 211
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 66-100 1.23e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.97  E-value: 1.23e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1540347280  66 CGQD-FQCKeTGRCLKRHLVCNGDQDCLDGSDEDDC 100
Cdd:cd00112     1 CPPNeFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
65-100 1.99e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 47.24  E-value: 1.99e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1540347280  65 QCGQD-FQCkETGRCLKRHLVCNGDQDCLDGSDEDDC 100
Cdd:pfam00057   2 TCSPNeFQC-GSGECIPRSWVCDGDPDCGDGSDEENC 37
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 521-554 7.80e-07

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 46.04  E-value: 7.80e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1540347280  521 CRAGIQERRRECDNPAPQNGGASCPGRKVQTQAC 554
Cdd:smart00209  14 CGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRAC 47
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
 65-97 2.04e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.16  E-value: 2.04e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1540347280   65 QCGQD-FQCKeTGRCLKRHLVCNGDQDCLDGSDE 97
Cdd:smart00192   1 TCPPGeFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 9-44 3.23e-04

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 38.80  E-value: 3.23e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1540347280   9 CQLSNWSEWTDC-FPCQD-KKYRHRSLLQPNKFGGTIC 44
Cdd:pfam19028   1 CVVSEWSEWSECsVTCGGgVQTRTRTVIVEPQNGGRPC 38
TSP_1 pfam00090
Thrombospondin type 1 domain;
521-554 3.66e-04

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 38.55  E-value: 3.66e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1540347280 521 CRAGIQERRRECDNPAPqnGGASCPGRKVQTQAC 554
Cdd:pfam00090  13 CGKGIQVRQRTCKSPFP--GGEPCTGDDIETQAC 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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