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Conserved domains on  [gi|1539295626|emb|VDZ65870|]
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Flavodoxin-1 [Serratia odorifera]

Protein Classification

flavodoxin( domain architecture ID 10013166)

flavodoxin is a low-potential electron donor to a number of redox enzymes; such as Escherichia coli flavodoxin 1 (FldA) that is involved in the reactivation of inactive cob(II)alamin in methionine synthase, and Azotobacter chroococcum flavodoxin B (NifF) that is the electron donor to nitrogenase

CATH:  3.40.50.360
Gene Ontology:  GO:0010181|GO:0009055
PubMed:  16465441
SCOP:  3001217

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-174 6.03e-108

flavodoxin FldA; Validated


:

Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 305.60  E-value: 6.03e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   1 MANVGIFFGSDTGNTENIAKMIQKLLrqsfGDDVAEVHDIAKSSKEDLDAFDILLLGIPTWYYGEAQCDWDDFFPTLEEI 80
Cdd:PRK09267    1 MAKIGIFFGSDTGNTEDIAKMIQKKL----GKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEI 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  81 DFNGKLVALFGCGDQEDYAEYFCDAMGTIRDIIEPRGAAIVGHWPTKGYHFEASKGLaDDDHFIGLAIDEDRQPELTDER 160
Cdd:PRK09267   77 DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAV-DDGKFVGLALDEDNQSELTDER 155

                         170
                  ....*....|....
gi 1539295626 161 VQGWVTQISAELSL 174
Cdd:PRK09267  156 IEAWVKQIKPEFGL 169
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-174 6.03e-108

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 305.60  E-value: 6.03e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   1 MANVGIFFGSDTGNTENIAKMIQKLLrqsfGDDVAEVHDIAKSSKEDLDAFDILLLGIPTWYYGEAQCDWDDFFPTLEEI 80
Cdd:PRK09267    1 MAKIGIFFGSDTGNTEDIAKMIQKKL----GKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEI 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  81 DFNGKLVALFGCGDQEDYAEYFCDAMGTIRDIIEPRGAAIVGHWPTKGYHFEASKGLaDDDHFIGLAIDEDRQPELTDER 160
Cdd:PRK09267   77 DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAV-DDGKFVGLALDEDNQSELTDER 155

                         170
                  ....*....|....
gi 1539295626 161 VQGWVTQISAELSL 174
Cdd:PRK09267  156 IEAWVKQIKPEFGL 169
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 3-173 1.74e-92

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 266.53  E-value: 1.74e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   3 NVGIFFGSDTGNTENIAKMIQKLLrqsfGDDVAEVHDIAKSSKEDLDAFDILLLGIPTWYYGEAQCDWDDFFPTLEEIDF 82
Cdd:TIGR01752   1 KIGIFYGTDTGNTEGIAEKIQKEL----GEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDF 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  83 NGKLVALFGCGDQEDYAEYFCDAMGTIRDIIEPRGAAIVGHWPTKGYHFEASKGLADDDHFIGLAIDEDRQPELTDERVQ 162
Cdd:TIGR01752  77 TGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEERIE 156

                         170
                  ....*....|.
gi 1539295626 163 GWVTQISAELS 173
Cdd:TIGR01752 157 KWVEQIKPEFA 167
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-168 5.28e-44

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 142.35  E-value: 5.28e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   4 VGIFFGSDTGNTENIAKMIQKLLrqsfGDDVAEVHDIAKSSKEDLDAFDILLLGIPTWyYGEAQCDWDDFFPTLEEiDFN 83
Cdd:COG0716     1 ILIVYGSTTGNTEKVAEAIAEAL----GAAGVDLFEIEDADLDDLEDYDLLILGTPTW-AGELPDDWEDFLEELKE-DLS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  84 GKLVALFGCGDQEDYAeyfcDAMGTIRDIIEPRGAAIVGhwptkGYHFEaskgladddhfiglaIDEDRQPELTDERVQG 163
Cdd:COG0716    75 GKKVALFGTGDSSGYG----DALGELKELLEEKGAKVVG-----GYDFE---------------GSKAPDAEDTEERAEE 130


                  ....*
gi 1539295626 164 WVTQI 168
Cdd:COG0716   131 WLKQL 135
Flavodoxin_1 pfam00258
Flavodoxin;
6-164 1.09e-28

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 103.60  E-value: 1.09e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   6 IFFGSDTGNTENIAKMIQKLLRQS-FGDDVAEVHDIAKSSKEdLDAFDILLLGIPTWYYGEAQ------CDWDDFFPTLE 78
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEAgFEVDVVDLDDVDETLSE-IEEEDLLLVVVSTWGEGEPPdnakpfVDWLLLFGTLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  79 EIDFNGKLVALFGCGDQEDYaeYFCDAMGTIRDIIEPRGAAIVGHwptkgyhfeaskgladddhfiGLAIDEDRQPELTD 158
Cdd:pfam00258  80 DGDLSGLKYAVFGLGDSGYE--GFCGAAKKLDEKLSELGASRVGP---------------------LGEGDEDPQEDGLE 136


                  ....*.
gi 1539295626 159 ERVQGW 164
Cdd:pfam00258 137 EAFEAW 142
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-174 6.03e-108

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 305.60  E-value: 6.03e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   1 MANVGIFFGSDTGNTENIAKMIQKLLrqsfGDDVAEVHDIAKSSKEDLDAFDILLLGIPTWYYGEAQCDWDDFFPTLEEI 80
Cdd:PRK09267    1 MAKIGIFFGSDTGNTEDIAKMIQKKL----GKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEI 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  81 DFNGKLVALFGCGDQEDYAEYFCDAMGTIRDIIEPRGAAIVGHWPTKGYHFEASKGLaDDDHFIGLAIDEDRQPELTDER 160
Cdd:PRK09267   77 DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAV-DDGKFVGLALDEDNQSELTDER 155

                         170
                  ....*....|....
gi 1539295626 161 VQGWVTQISAELSL 174
Cdd:PRK09267  156 IEAWVKQIKPEFGL 169
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 3-173 1.74e-92

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 266.53  E-value: 1.74e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   3 NVGIFFGSDTGNTENIAKMIQKLLrqsfGDDVAEVHDIAKSSKEDLDAFDILLLGIPTWYYGEAQCDWDDFFPTLEEIDF 82
Cdd:TIGR01752   1 KIGIFYGTDTGNTEGIAEKIQKEL----GEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDF 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  83 NGKLVALFGCGDQEDYAEYFCDAMGTIRDIIEPRGAAIVGHWPTKGYHFEASKGLADDDHFIGLAIDEDRQPELTDERVQ 162
Cdd:TIGR01752  77 TGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEERIE 156

                         170
                  ....*....|.
gi 1539295626 163 GWVTQISAELS 173
Cdd:TIGR01752 157 KWVEQIKPEFA 167
PRK12359 PRK12359
flavodoxin FldB; Provisional
 3-173 4.85e-60

flavodoxin FldB; Provisional


Pssm-ID: 183471 [Multi-domain]  Cd Length: 172  Bit Score: 184.38  E-value: 4.85e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   3 NVGIFFGSDTGNTENIAKMIQKLLrqsfGDDVAEVHDIAKSSKEDLDAFDILLLGIPTWYYGEAQCDWDDFFPTLEEIDF 82
Cdd:PRK12359    2 KIGLFYGSSTCYTEMAAEKIRDII----GEELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  83 NGKLVALFGCGDQEDYAEYFCDAMGTIRDIIEPRGAAIVGHWPTKGYHFEASKGLADD-DHFIGLAIDEDRQPELTDERV 161
Cdd:PRK12359   78 EGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADgQLFVGLALDEVNQYDLSDERI 157

                         170
                  ....*....|..
gi 1539295626 162 QGWVTQISAELS 173
Cdd:PRK12359  158 QQWCEQILLEMA 169
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-168 5.28e-44

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 142.35  E-value: 5.28e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   4 VGIFFGSDTGNTENIAKMIQKLLrqsfGDDVAEVHDIAKSSKEDLDAFDILLLGIPTWyYGEAQCDWDDFFPTLEEiDFN 83
Cdd:COG0716     1 ILIVYGSTTGNTEKVAEAIAEAL----GAAGVDLFEIEDADLDDLEDYDLLILGTPTW-AGELPDDWEDFLEELKE-DLS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  84 GKLVALFGCGDQEDYAeyfcDAMGTIRDIIEPRGAAIVGhwptkGYHFEaskgladddhfiglaIDEDRQPELTDERVQG 163
Cdd:COG0716    75 GKKVALFGTGDSSGYG----DALGELKELLEEKGAKVVG-----GYDFE---------------GSKAPDAEDTEERAEE 130


                  ....*
gi 1539295626 164 WVTQI 168
Cdd:COG0716   131 WLKQL 135
Flavodoxin_1 pfam00258
Flavodoxin;
6-164 1.09e-28

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 103.60  E-value: 1.09e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   6 IFFGSDTGNTENIAKMIQKLLRQS-FGDDVAEVHDIAKSSKEdLDAFDILLLGIPTWYYGEAQ------CDWDDFFPTLE 78
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEAgFEVDVVDLDDVDETLSE-IEEEDLLLVVVSTWGEGEPPdnakpfVDWLLLFGTLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  79 EIDFNGKLVALFGCGDQEDYaeYFCDAMGTIRDIIEPRGAAIVGHwptkgyhfeaskgladddhfiGLAIDEDRQPELTD 158
Cdd:pfam00258  80 DGDLSGLKYAVFGLGDSGYE--GFCGAAKKLDEKLSELGASRVGP---------------------LGEGDEDPQEDGLE 136


                  ....*.
gi 1539295626 159 ERVQGW 164
Cdd:pfam00258 137 EAFEAW 142
flav_short TIGR01753
flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin ...
 6-122 4.13e-22

flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. [Energy metabolism, Electron transport]


Pssm-ID: 273789 [Multi-domain]  Cd Length: 140  Bit Score: 86.62  E-value: 4.13e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   6 IFFGSDTGNTENIAKMIQKLLRQSFGD-DVAEVHDIaksSKEDLDAFDILLLGIPTWYYGE-AQCDWDDFFPTLEEIDFN 83
Cdd:TIGR01753   3 IVYASMTGNTEEMANIIAEGLKEAGAEvDLLEVADA---DAEDLLSYDAVLLGCSTWGDEDlEQDDFEPFFEELEDIDLG 79

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1539295626  84 GKLVALFGCGDQEDyaeYFCDAMGTIRDIIEPRGAAIVG 122
Cdd:TIGR01753  80 GKKVALFGSGDWGY---EFCEAVDDWEERLKEAGATIIA 115
PRK06703 PRK06703
flavodoxin; Provisional
 1-121 1.59e-18

flavodoxin; Provisional


Pssm-ID: 235854 [Multi-domain]  Cd Length: 151  Bit Score: 77.49  E-value: 1.59e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   1 MANVGIFFGSDTGNTENIAKMIQKLLrQSFGDDVaEVHDIAKSSKEDLDAFDILLLGIPTWYYGEAQCDWDDFFPTLEEI 80
Cdd:PRK06703    1 MAKILIAYASMSGNTEDIADLIKVSL-DAFDHEV-VLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENI 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1539295626  81 DFNGKLVALFGCGdqeDYA-EYFCDAMGTIRDIIEPRGAAIV 121
Cdd:PRK06703   79 DLSGKKVAVFGSG---DTAyPLFCEAVTIFEERLVERGAELV 117
PRK06756 PRK06756
flavodoxin; Provisional
 1-121 1.38e-10

flavodoxin; Provisional


Pssm-ID: 168663 [Multi-domain]  Cd Length: 148  Bit Score: 56.81  E-value: 1.38e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   1 MANVGIFFGSDTGNTENIAKMIQKLLRQSFGD-DVAEVHDIAKSSkeDLDAFDILLLGIPTWYYGEAQCDWDDFFPTLEE 79
Cdd:PRK06756    1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEiEVIDIMDSPEAS--ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDS 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1539295626  80 IDFNGKLVALFGCGDQEdyAEYFCDAMGTIRDIIEPRGAAIV 121
Cdd:PRK06756   79 IDLTGKKAAVFGSCDSA--YPKYGVAVDILIEKLQERGAAVV 118
PRK07308 PRK07308
flavodoxin; Validated
 1-118 1.53e-08

flavodoxin; Validated


Pssm-ID: 180922 [Multi-domain]  Cd Length: 146  Bit Score: 50.94  E-value: 1.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   1 MANVGIFFGSDTGNTENIAKMIQKLLRQsFGDDVaEVHDIAKSSKEDLDAFDILLLGIPTWYYGEAQCDWDDFFPTLEEI 80
Cdd:PRK07308    1 MALAKIVYASMTGNTEEIADIVADKLRE-LGHDV-DVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADL 78

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1539295626  81 DFNGKLVALFGCGDQedYAEYFCDAMGTIRDIIEPRGA 118
Cdd:PRK07308   79 DLSGKIYGVVGSGDT--FYDYFCKSVDDFEAQFALTGA 114
PRK09271 PRK09271
flavodoxin; Provisional
 10-105 7.45e-07

flavodoxin; Provisional


Pssm-ID: 181744  Cd Length: 160  Bit Score: 46.72  E-value: 7.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  10 SDTGNTENIAKMIQKLLrQSFGDDVAEVH-DIAKSSKEDLDA--FDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKL 86
Cdd:PRK09271    9 SLSGNTREVAREIEERC-EEAGHEVDWVEtDVQTLAEYPLDPedYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPN 87

                          90
                  ....*....|....*....
gi 1539295626  87 VALFGCGDQEDYAEYFCDA 105
Cdd:PRK09271   88 VAVFGTGETQWGEEYYCGA 106
PRK05568 PRK05568
flavodoxin; Provisional
 1-91 1.57e-06

flavodoxin; Provisional


Pssm-ID: 235508 [Multi-domain]  Cd Length: 142  Bit Score: 45.57  E-value: 1.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   1 MANVGIFFGSDTGNTENIAKMIQKLLRQSfGDDVAEVHdIAKSSKEDLDAFDILLLGIPTwyYGEAQCDWDDFFPTLEEI 80
Cdd:PRK05568    1 MKKINIIYWSGTGNTEAMANLIAEGAKEN-GAEVKLLN-VSEASVDDVKGADVVALGSPA--MGDEVLEEGEMEPFVESI 76

                          90
                  ....*....|...
gi 1539295626  81 --DFNGKLVALFG 91
Cdd:PRK05568   77 ssLVKGKKLVLFG 89
NorV COG0426
Flavorubredoxin [Energy production and conversion];
4-93 1.99e-06

Flavorubredoxin [Energy production and conversion];


Pssm-ID: 440195 [Multi-domain]  Cd Length: 390  Bit Score: 46.75  E-value: 1.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   4 VGIFFGSDTGNTENIAKMIQKLLRQSfGDDVaEVHDIAKSSKEDL--DAFD--ILLLGIPTwYYGEAQCDWDDFFPTLEE 79
Cdd:COG0426   249 VVIVYASMYGNTEKMAEAIAEGLTEE-GVKV-KLYDLEKTDPSEIitEIFDakGIVIGSPT-YNGGAFPPIADLLGYLKG 325

                          90
                  ....*....|....
gi 1539295626  80 IDFNGKLVALFGCG 93
Cdd:COG0426   326 LAPKNKLAGAFGSY 339
Flavodoxin_5 pfam12724
Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins ...
 6-93 1.30e-05

Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN.


Pssm-ID: 463681 [Multi-domain]  Cd Length: 144  Bit Score: 43.02  E-value: 1.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   6 IFFGSDTGNTENIAKMIQKLLRQSfgDDVAEVHDIAKSskEDLDAFDILLLGIPTwYYGEAQCDWDDFFpTLEEIDFNGK 85
Cdd:pfam12724   2 ILYSSRDGQTKKIAERIAEELREE--GELVDVEDVEAG--EDLSSYDAVVIGASI-YYGKHLPELRQFV-TKHRDELSSK 75


                  ....*...
gi 1539295626  86 LVALFGCG 93
Cdd:pfam12724  76 PVAFFSVN 83
PRK07116 PRK07116
flavodoxin; Provisional
 7-90 5.59e-04

flavodoxin; Provisional


Pssm-ID: 180850  Cd Length: 160  Bit Score: 38.50  E-value: 5.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   7 FFgSDTGNTENIAKMIQKLLRqsfgddvAEVHDIA--------------KSSK------------------EDLDAFDIL 54
Cdd:PRK07116    9 YF-SATGTTKKVAEKLAEVTG-------ADLFEIKpeqpytaadldwndKKSRssvemadkssrpaiakkiENIAEYDVI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1539295626  55 LLGIPTWYYGEaqcdwddffPT-----LEEIDFNGKLVALF 90
Cdd:PRK07116   81 FLGFPIWWYVA---------PRiintfLESYDFSGKTVIPF 112
PRK06242 PRK06242
flavodoxin; Provisional
 13-131 1.85e-03

flavodoxin; Provisional


Pssm-ID: 180484 [Multi-domain]  Cd Length: 150  Bit Score: 36.82  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626  13 GNTENIAKMIQKLLRqsfgddvAEVHDIAKSSKEDLDAFDILLL--GIptwYYGEAQCDWDDFFPTLEEIDfnGKLVALF 90
Cdd:PRK06242   13 GNTEKIAKAIAEVLD-------AEVIDPGDVNPEDLSEYDLIGFgsGI---YFGKFHKSLLKLIEKLPPVS--GKKAFIF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1539295626  91 G-CGDQedyaeyFCDAMGTIRDIIEPRGAAIVGHWPTKGYHF 131
Cdd:PRK06242   81 StSGLP------FLKYHKALKKKLKEKGFEIVGEFSCKGFDT 116
CysJ COG0369
Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases ...
 6-112 5.17e-03

Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases [Nucleotide transport and metabolism, Inorganic ion transport and metabolism]; Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases is part of the Pathway/BioSystem: Cysteine biosynthesis


Pssm-ID: 440138 [Multi-domain]  Cd Length: 561  Bit Score: 36.66  E-value: 5.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539295626   6 IFFGSDTGNTENIAKMIQKLLRQSfGDDVaEVHDIAKSSKEDLDAFDILLLGIPTWYYGEAQCDWDDFF--------PTL 77
Cdd:COG0369    31 ILYGSQTGNAEGLAEQLAERAKAA-GLAV-TLASLDDYKPKDLAKEGLLLIVTSTYGEGEPPDNARAFYeflhskkaPKL 108

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1539295626  78 EEIDFngklvALFGCGDQeDYaEYFCdamGTIRDI 112
Cdd:COG0369   109 DGLRY-----AVLGLGDS-SY-ETFC---QTGKDF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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