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Conserved domains on  [gi|1534505503|gb|AZL87509|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Sceloporus oberon]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-237 8.95e-146

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 414.98  E-value: 8.95e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00124  220 HVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIA 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00124  300 ATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGEL 379

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALISG 237
Cdd:MTH00124  380 TIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISG 456
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-237 8.95e-146

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 414.98  E-value: 8.95e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00124  220 HVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIA 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00124  300 ATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGEL 379

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALISG 237
Cdd:MTH00124  380 TIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISG 456
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-192 1.66e-50

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 171.42  E-value: 1.66e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:COG1008   316 LGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGE 395

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGTLITAMYTLHMF 192
Cdd:COG1008   396 FLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-181 2.79e-46

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 155.55  E-value: 2.79e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:pfam00361 109 YEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLA-NTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:pfam00361 189 ALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268

                         170       180
                  ....*....|....*....|..
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGT 181
Cdd:pfam00361 269 FLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-192 1.25e-44

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 155.87  E-value: 1.25e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPF-MILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:TIGR01972 230 HVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVlAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:TIGR01972 310 LGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGTLITAMYTLHMF 192
Cdd:TIGR01972 390 FLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-237 8.95e-146

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 414.98  E-value: 8.95e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00124  220 HVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIA 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00124  300 ATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGEL 379

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALISG 237
Cdd:MTH00124  380 TIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISG 456
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-239 2.07e-134

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 386.19  E-value: 2.07e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00068  220 HVEAPIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIA 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00068  300 AALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGEL 379

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALISGLI 239
Cdd:MTH00068  380 TIMVSLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-239 7.83e-131

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 376.93  E-value: 7.83e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00110  220 HVEAPIAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIV 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00110  300 AILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGEL 379

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALISGLI 239
Cdd:MTH00110  380 FVIMSSFSWSNITIILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPT 458
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-237 1.75e-109

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 322.68  E-value: 1.75e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00127  221 HVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAG 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00127  301 GILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGEL 380

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALISG 237
Cdd:MTH00127  381 MIITSLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-235 1.02e-100

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 299.93  E-value: 1.02e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00206  216 HVEAPVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTA 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00206  296 GILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGEL 375

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALI 235
Cdd:MTH00206  376 LIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-236 2.54e-84

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 258.37  E-value: 2.54e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMAL-TPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:MTH00044  221 HVEAPVAGSMILAAILLKLGGYGLIRLINLFsLPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVA 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:MTH00044  301 AGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGE 380

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALIS 236
Cdd:MTH00044  381 LLIISSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-235 3.33e-76

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 236.97  E-value: 3.33e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00163  208 HVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLG 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00163  288 GLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEI 367

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALI 235
Cdd:MTH00163  368 SLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLF 442
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-239 1.39e-73

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 229.34  E-value: 1.39e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00150  179 HVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLA 258

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00150  259 GVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEI 338

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALISGLI 239
Cdd:MTH00150  339 MIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFMWI 417
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-236 9.06e-67

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 213.06  E-value: 9.06e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00014  214 HVEAPVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTA 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00014  294 GIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEI 373

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALIS 236
Cdd:MTH00014  374 MLLTSILSSSLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLIT 449
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-235 8.65e-66

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 210.22  E-value: 8.65e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00205  212 HVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00205  292 GVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEI 371

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINFSDPTHTREHLLMTLHLAPLILIITKPALI 235
Cdd:MTH00205  372 LLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIF 446
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-192 1.66e-50

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 171.42  E-value: 1.66e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:COG1008   316 LGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGE 395

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGTLITAMYTLHMF 192
Cdd:COG1008   396 FLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-181 2.79e-46

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 155.55  E-value: 2.79e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:pfam00361 109 YEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLA-NTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:pfam00361 189 ALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268

                         170       180
                  ....*....|....*....|..
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGT 181
Cdd:pfam00361 269 FLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-192 1.25e-44

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 155.87  E-value: 1.25e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPF-MILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:TIGR01972 230 HVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVlAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:TIGR01972 310 LGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGTLITAMYTLHMF 192
Cdd:TIGR01972 390 FLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-192 3.91e-43

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 151.75  E-value: 3.91e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:MTH00204  236 HVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVmLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVP 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:MTH00204  316 LGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGE 395

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGTLITAMYTLHMF 192
Cdd:MTH00204  396 FFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-193 7.92e-43

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 151.12  E-value: 7.92e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPF-MILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:PRK05846  238 HVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIiITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:PRK05846  318 LGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGE 397

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGTLITAMYTLHMFL 193
Cdd:PRK05846  398 FLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQ 431
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-192 9.01e-43

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 150.97  E-value: 9.01e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPF-MILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:MTH00217  233 HVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLiQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVT 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:MTH00217  313 LGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGE 392

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGTLITAMYTLHMF 192
Cdd:MTH00217  393 FLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-190 5.50e-38

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 138.52  E-value: 5.50e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:MTH00226  257 HVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLAPAVIaMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVS 336

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:MTH00226  337 ITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGE 416

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1534505503 160 LLIIISLFNWSAPTILLTGLGTLITAMYTLH 190
Cdd:MTH00226  417 YLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-228 1.96e-28

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 112.05  E-value: 1.96e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYP-FMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:PRK12561  212 HGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:PRK12561  292 LGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSE 371

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503 160 LLIIISLFN-------WSAPTILLTGLGTLITAMYTLHM----FLTTQRNKLPTSINFSDpTHTREHLLMTLHLAPLILI 228
Cdd:PRK12561  372 LTVFLGITSsdvysstFRTITILLAAVGLILTPIYLLSMlrrvFYGPRSELLPALAVVED-AKPRELFIALSLLVPIIGI 450
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-189 1.25e-27

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 108.84  E-value: 1.25e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPItpkLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:MTH00094  178 HVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLL 254

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:MTH00094  255 SLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEF 334

                         170       180
                  ....*....|....*....|....*....
gi 1534505503 161 LIIISLFNWSAPTILLTGLGTLITAMYTL 189
Cdd:MTH00094  335 LIISNSFMKNKFSFFFIFFYFLVSFYYSL 363
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-183 1.59e-25

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 103.30  E-value: 1.59e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLY--YPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLV 78
Cdd:COG0651   232 YPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADPALFlgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYI 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  79 IAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMG 158
Cdd:COG0651   312 LLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVS 391

                         170       180
                  ....*....|....*....|....*....
gi 1534505503 159 ELLIIISLFN----WSAPTILLTGLGTLI 183
Cdd:COG0651   392 KWLLLQAALEagawLLAAVLLLSSLLTLA 420
ndhD CHL00011
NADH dehydrogenase subunit 4
 1-191 1.18e-24

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 101.56  E-value: 1.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPF-MILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:CHL00011  238 HGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWlVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFII 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERthTRTMMLAR--GFQIILPLMSTWWLLANLTNMALPPSINLM 157
Cdd:CHL00011  318 IGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDR--IRLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFV 395

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1534505503 158 GELL----IIISLFNWSAPTILLT---GLGTLITAMYTLHM 191
Cdd:CHL00011  396 AELIvffgIITSQKYLLMPKILITfvmAIGMILTPIYLLSM 436
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
1-201 6.62e-24

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 99.39  E-value: 6.62e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFM-ILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:PRK06473  232 HVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYIL 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGF---QIILPLMSTWWLLANLTNMALPPSINL 156
Cdd:PRK06473  312 LAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGF 391

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1534505503 157 MGELLIIISLFNWSAPTILLTGLGTLITAMYTLHMF-------LTTQRNKLP 201
Cdd:PRK06473  392 IAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVnrvffgrLTAELSNLP 443
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-191 6.05e-22

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 94.00  E-value: 6.05e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPFMI-LALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVI 79
Cdd:PRK02546  240 HGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLIvLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVL 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  80 AACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGE 159
Cdd:PRK02546  320 IGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAE 399

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1534505503 160 LLIIISL-------FNWSAPTILLTGLGTLITAMYTLHM 191
Cdd:PRK02546  400 LMVFVGFatsdaytLPFRVVVVFLAAVGVILTPIYLLSM 438
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-186 1.28e-16

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 78.43  E-value: 1.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITM--ALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLV 78
Cdd:PRK06458  241 HSEAPSPVSALLSGVLLNVALYAVLRYYIliDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  79 IAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMG 158
Cdd:PRK06458  321 AFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFIS 400

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1534505503 159 ELLIIISLFN---WSAPTILLTGLGTLITAM 186
Cdd:PRK06458  401 EFLILTAGLArgpLLIAILLLLLLTLAFAAL 431
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-187 1.77e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 74.92  E-value: 1.77e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMAL----TPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMG 76
Cdd:PRK08375  229 YPAAPPVVTALLSGLVTKVAVYALIRIYFTVfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMG 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  77 LVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINL 156
Cdd:PRK08375  309 YILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGF 388

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1534505503 157 MGELLIIISLFN-WSAPTILLTGLGTLITAMY 187
Cdd:PRK08375  389 VSKWYLVVGAVEaGQWLVLAVLLASSLLALLY 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-239 4.88e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 73.85  E-value: 4.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRI-------TMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVS 73
Cdd:PRK12667  250 HPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTIS 329

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  74 HMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPS 153
Cdd:PRK12667  330 HMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPL 409

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503 154 INLMGELLIIISLFNWS-APTILLTGLGTLITAMYTLHMFLTTQRNKLPTSINfsdpTHTREHLLMTLhlapLILIITKP 232
Cdd:PRK12667  410 NGFFSKLLLFNALLESGfYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEE----VEHKESPSMSV----VILVLALA 481


                  ....*..
gi 1534505503 233 ALISGLI 239
Cdd:PRK12667  482 VLILGIL 488
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-187 9.41e-15

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 72.82  E-value: 9.41e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPITPKLYYPfmILALWGIVMT---SSICMRQTDLKSLIAYSSVSHMGL 77
Cdd:PRK07363  232 YTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMGY 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  78 VIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQII---LPLMSTWWLLANLTNMALPPSI 154
Cdd:PRK07363  310 ILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLV 389

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1534505503 155 NLMGELLIIISLFNWSAPTILLTGLGTLITAMY 187
Cdd:PRK07363  390 GFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVY 422
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-184 9.94e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 66.90  E-value: 9.94e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRitmaLTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:PRK07234  211 HSEAEPPVSALLSGVVVKAGVFPLVR----CALDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIqtpwsftgAMILMIAHGLTSSMLFCLANTNYERTHT--RTMMLARGFQIILplmstwwLLANLTNMALPPSINLMG 158
Cdd:PRK07234  287 APLV--------GGLYALAHGLVKSTLFLCAGALPSRNFTelISQMLGIGKWIPL-------TMASFSIAGFPLLAGFVS 351

                         170       180
                  ....*....|....*....|....*.
gi 1534505503 159 ELLIIISLFNWSAPTILLTGLGTLIT 184
Cdd:PRK07234  352 KVLTLKNLLPWQAIALNLAAVGTAAS 377
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-123 2.08e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.31  E-value: 2.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMrITMALTPIT------------PKLYYPFMILALWGIVMTSSICMRQTDLKSLIA 68
Cdd:PRK08668  223 YSEAPQSFSAVLSGQLSKLGAYGFL-LVLYVLPGTklfsefgtyrgvPLFNYILAWLGNISIIVGTLMAILQEDIKKLIA 301

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1534505503  69 YSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTM 123
Cdd:PRK08668  302 YSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKI 356
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-108 2.28e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 57.07  E-value: 2.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMAL--TPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLV 78
Cdd:PRK08676  233 YAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312

                          90       100       110
                  ....*....|....*....|....*....|
gi 1534505503  79 IAACLIQTPWSFTGAMILMIAHGLTSSMLF 108
Cdd:PRK08676  313 LLGIGIGTPLALFWMLFHMLAHSLVKSGLF 342
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-167 2.76e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 56.66  E-value: 2.76e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALtpITPKLYYPFMILALWGI--VMTSSICMRQTDLKSLIAYSSVSHMGLV 78
Cdd:PRK08667  232 HPASPSNVSALMSGVMLKVAVYGLVRFLMDV--LSPELWWGVLILLAGSIsaLLGVIYALKEHDLKGLLAYSSIENIGII 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  79 IAACLIQTPWSFTG----AMILMIA-------HGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTN 147
Cdd:PRK08667  310 LMGIGLYVIFGVYGldtlALLALGGalfhslnHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSI 389

                         170       180
                  ....*....|....*....|
gi 1534505503 148 MALPPSINLMGELLIIISLF 167
Cdd:PRK08667  390 AALPPFNGFASELLLYESFF 409
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-189 7.14e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 55.70  E-value: 7.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   3 EAPIAGSMVL-AAILLKLGGYGIMRitmaLTPITPKLYYPFMILALWG---IVMTSSICMRQTDLKSLIAYSSVSHMGLV 78
Cdd:PRK12647  223 EAPTPVSAYLhSATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTL 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  79 IAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMG 158
Cdd:PRK12647  299 VMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLA 378

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1534505503 159 ELLIIISLFN---WSAPTILLTGLGTLITAMYTL 189
Cdd:PRK12647  379 KELIYEALLEaplWSLILTVAAVLGNALMVAVAF 412
PRK12650 PRK12650
DUF4040 family protein;
13-152 9.68e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 55.43  E-value: 9.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  13 AAILLKLGGYGIMRITMALTPItPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQTPWSFTG 92
Cdd:PRK12650  247 AAAVVKAGIYLLLRFSPVFHDV-AVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTA 325

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  93 AMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPP 152
Cdd:PRK12650  326 AVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPP 385
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 13-239 1.39e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 51.69  E-value: 1.39e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  13 AAILLKLGGYGIMRIT--MALTPITpklyypFMILALWGIV---MTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQtp 87
Cdd:COG1009   250 AATMVKAGVYLLARLSplFALSPVW------LTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG-- 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  88 wSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGELLIIISLF 167
Cdd:COG1009   322 -AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAL 400

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1534505503 168 NWSAPTILLTGLGTL---ITAMYTLHMFLTTQRNKLPTsinfSDPTHTRE-HLLMTlhLAPLILIItkPALISGLI 239
Cdd:COG1009   401 EAGGLGPLLLAVALLgafLTAFYSFRLFFLVFFGKPRP----KTPKHPHEsPWLMT--LPLVVLAV--LSLVLGLL 468
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 46-217 1.63e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 51.36  E-value: 1.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  46 ALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMML 125
Cdd:PRK06589  287 PIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDK 366

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503 126 ARGFQIILPLMSTWWLLANLTNMALPPSINLMGELLIIISLFNWSAPT--ILLTGLGTLITAMYTLHMFLTTQRNKLPTS 203
Cdd:PRK06589  367 LHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWlsIIVMLVVIASSILSALYLLKILSSIYKPSL 446

                         170
                  ....*....|....
gi 1534505503 204 INFSDPTHTREHLL 217
Cdd:PRK06589  447 SENSFITKSLPYLM 460
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 3-182 1.85e-07

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 51.13  E-value: 1.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   3 EAPIAGSMVL-AAILLKLGGYGIMRITMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMG---LV 78
Cdd:PRK06525  235 EAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGymfFG 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  79 IAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMG 158
Cdd:PRK06525  315 LSLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFS 394

                         170       180
                  ....*....|....*....|....
gi 1534505503 159 ELLIIISLFNWSAPTILLTGLGTL 182
Cdd:PRK06525  395 KFPIFAAGFELSVEYWILLPAMVL 418
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 3-187 3.16e-06

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 47.45  E-value: 3.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   3 EAPIAGSMVLAAILLKLGGYGIMRI--TMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIA 80
Cdd:PRK08377  235 AAPHPITVMFSAFVVKAGLYAMARIlyLMQNANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIAL 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  81 ACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGEL 160
Cdd:PRK08377  315 ALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKF 394

                         170       180
                  ....*....|....*....|....*....
gi 1534505503 161 LIIISLFN--WSAPTILLTGlGTLITAMY 187
Cdd:PRK08377  395 RIILAGLSagYTWPVALVLG-ASVVEAVY 422
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
18-104 3.32e-06

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 47.51  E-value: 3.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  18 KLGGYGI-MRI-TMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQTPWSFTGAMI 95
Cdd:PRK05777  247 KIAAFAVlLRLlVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLF 326


                  ....*....
gi 1534505503  96 LMIAHGLTS 104
Cdd:PRK05777  327 YLLAYLFMT 335
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 42-111 1.06e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.88  E-value: 1.06e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  42 FMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLA 111
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVS 351
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-186 1.12e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 45.71  E-value: 1.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   5 PIAGSMVLAAILLKLGGYGIMRI-TMALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACL 83
Cdd:PRK07691  240 PIAIAALFGALLTKVGVYAIARTfTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVA 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  84 IQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGELLII 163
Cdd:PRK07691  320 MMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIV 399

                         170       180
                  ....*....|....*....|....*..
gi 1534505503 164 ISLFN----WSAPTILLTGLGTLITAM 186
Cdd:PRK07691  400 EGTFEagfyVSGIIVLLSSLLVLYSVI 426
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 18-104 1.65e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 45.11  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  18 KLGGYGI-MRITM-ALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQTPWSFTGAMI 95
Cdd:COG1007   246 KIAAFAAlLRLLVeAFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALF 325


                  ....*....
gi 1534505503  96 LMIAHGLTS 104
Cdd:COG1007   326 YLLAYLFMN 334
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 35-193 5.63e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 43.34  E-value: 5.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  35 TPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQtpwSFTGAMILMIAHGLTSSMLFCLANTN 114
Cdd:MTH00144  140 LYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHG---SWLMWMYFLIYIVSSGFLFFSLWSGD 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503 115 YerthtrTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGELLIIISLFNWSAP-TILLTGLGTLITAMYTLHMFL 193
Cdd:MTH00144  217 S------GSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLlLILLLLLGSLISLFFYLSVFF 290
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 1-186 6.91e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 43.34  E-value: 6.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMRITMALTPiTPKLYYPFMILALWGI--VMTSSICMRQTDLKSLIAYSSVSHMGLV 78
Cdd:PRK06521  237 HPAAPSHVSALMSGVMLKVAIYGILRVVFDLLG-APGWWWGVLVLALGAIsaVLGVLYALAEHDLKRLLAYSTIENIGII 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  79 IAA---CLI--------QTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANLTN 147
Cdd:PRK06521  316 FVGlglAMVfiaygmplLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTAWAFLIGCLAI 395

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1534505503 148 MALPPSINLMGELLIIISLFNWSA-PTILLTGLGTLITAM 186
Cdd:PRK06521  396 SALPPLNGFVSEWLLLQSLLSSPGlPQWGLKLAVPIAAAM 435
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
43-191 2.28e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.94  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  43 MILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQTPWSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRT 122
Cdd:PRK06277  270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1534505503 123 MMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGELLIIISLFNWSAPTI----LLTGLGTLITAMYTLHM 191
Cdd:PRK06277  350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELaiimIIVSIGTFVSMMKAFYL 422
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 1-179 2.66e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.74  E-value: 2.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   1 HVEAPIAGSMVLAAILLKLGGYGIMriTMALTPITPKLYYPFMILALWgiVMTSSI----CMRQTDLKSLIAYSSVSHMG 76
Cdd:PRK08042  207 HANASAPAAALFSTVVMKIGLLGIL--TLSLLGGNAPLWWGVALLVLG--MITAFVgglyALMEHNIQRLLAYHTLENIG 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  77 LV-------IAACLIQTP----WSFTGAMILMIAHGLTSSMLFCLANTNYERTHTRTMMLARGFQIILPLMSTWWLLANL 145
Cdd:PRK08042  283 IIllglgagVTGIALEQPaliaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLM 362

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1534505503 146 TNMALPPSINLMGELLIIISLFNWSAPTILLTGL 179
Cdd:PRK08042  363 AMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARL 396
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-168 1.50e-03

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 39.16  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  14 AILLKLGGYGI-MRITM-ALTPITPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQTPWSFT 91
Cdd:TIGR01770 242 SIVPKIAIFAVfLRLFLyILFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIK 321

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1534505503  92 GAMILMIAHGLTSSMLF-CLANT-NYERTHTRTMMLARGFQIILPLMSTWWLLANLTNMALPPSINLMGELLIIISLFN 168
Cdd:TIGR01770 322 AVLFYIFIYALMSLGAFgVLSLLrSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLK 400
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 27-191 3.34e-03

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 37.84  E-value: 3.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  27 ITMALTPITPKLYYPFMilALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIaacLIQTPWSFTGAMILMIAHGLTSSM 106
Cdd:MTH00011  137 ILFFFTSHNILPMMTSM--AAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMT---MISVFSPSMAILYFMTYIIITTPL 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503 107 LFCLANTNYERTHTRTMMLARGfqiilPLMSTWWLLANLTNMALPPSINLMGELLIIISLFNWSAPTILLTGL-GTLITA 185
Cdd:MTH00011  212 MLLFAYLNAFSTKFNSKISSMS-----QTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIvGSLMNL 286


                  ....*.
gi 1534505503 186 MYTLHM 191
Cdd:MTH00011  287 FYYLNL 292
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-108 3.35e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.41  E-value: 3.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503   4 APIAGSMVLAAILLKLGGYGIMRITMALTPiTPKLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACL 83
Cdd:PRK12665  239 APAPVTAVFAGLLTKVGVYAIIRTHTLLFP-GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIA 317

                          90       100
                  ....*....|....*....|....*
gi 1534505503  84 IQTPWSFTGAMILMIAHGLTSSMLF 108
Cdd:PRK12665  318 LSTVAGLSGAIYYVAHHITVQTTLF 342
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-108 4.51e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 37.98  E-value: 4.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534505503  13 AAILLKLGGYGIMRITMALTPITPkLYYPFMILALWGIVMTSSICMRQTDLKSLIAYSSVSHMGLVIAACLIQTPWSFTG 92
Cdd:PRK12644  242 AAAMVKAGIYLVARLAPGFADVPV-WRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALA 320

                          90
                  ....*....|....*.
gi 1534505503  93 AMILMIAHGLTSSMLF 108
Cdd:PRK12644  321 GLAMLLAHALFKAALF 336
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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