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Conserved domains on  [gi|1529650630|emb|VDL71101|]
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unnamed protein product [Nippostrongylus brasiliensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DNTTIP1_dimer pfam18192
DNTTIP1 dimerization domain; This is the N-terminal domain of DNTTIP1, a protein that forms ...
 7-73 8.40e-27

DNTTIP1 dimerization domain; This is the N-terminal domain of DNTTIP1, a protein that forms part of a novel histone deacetylase complex present in Homo sapiens. Histone deacetylase complexes comprise DNTTIP1, histone deacetylase (HDAC) and the repressor protein MIDEAS. The acetylation of histone tails plays a critical role in determining the accessibility of chromatin to transcriptional regulators and RNA polymerase complexes. This N-terminal domain is responsible for dimerization of histone deacetylase 1(HDAC1). The N-terminal domain also interacts and mediates the assembly of the HDAC1- MIDEAS complex.


:

Pssm-ID: 408020  Cd Length: 69  Bit Score: 97.84  E-value: 8.40e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1529650630   7 KSLDLMRRIFQNEITKELQQIMDRHIRTTFSPAIENLKKNGH--VVDQDVINDLYTSILDAAKVPFMRD 73
Cdd:pfam18192   1 KSLDLLRQVVQPAINKEIQEVIKKYMEKFFKPAAENIRENLGeeVVNEDLIQAACRSILENAKLLFSNG 69
 
Name Accession Description Interval E-value
DNTTIP1_dimer pfam18192
DNTTIP1 dimerization domain; This is the N-terminal domain of DNTTIP1, a protein that forms ...
 7-73 8.40e-27

DNTTIP1 dimerization domain; This is the N-terminal domain of DNTTIP1, a protein that forms part of a novel histone deacetylase complex present in Homo sapiens. Histone deacetylase complexes comprise DNTTIP1, histone deacetylase (HDAC) and the repressor protein MIDEAS. The acetylation of histone tails plays a critical role in determining the accessibility of chromatin to transcriptional regulators and RNA polymerase complexes. This N-terminal domain is responsible for dimerization of histone deacetylase 1(HDAC1). The N-terminal domain also interacts and mediates the assembly of the HDAC1- MIDEAS complex.


Pssm-ID: 408020  Cd Length: 69  Bit Score: 97.84  E-value: 8.40e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1529650630   7 KSLDLMRRIFQNEITKELQQIMDRHIRTTFSPAIENLKKNGH--VVDQDVINDLYTSILDAAKVPFMRD 73
Cdd:pfam18192   1 KSLDLLRQVVQPAINKEIQEVIKKYMEKFFKPAAENIRENLGeeVVNEDLIQAACRSILENAKLLFSNG 69
 
Name Accession Description Interval E-value
DNTTIP1_dimer pfam18192
DNTTIP1 dimerization domain; This is the N-terminal domain of DNTTIP1, a protein that forms ...
 7-73 8.40e-27

DNTTIP1 dimerization domain; This is the N-terminal domain of DNTTIP1, a protein that forms part of a novel histone deacetylase complex present in Homo sapiens. Histone deacetylase complexes comprise DNTTIP1, histone deacetylase (HDAC) and the repressor protein MIDEAS. The acetylation of histone tails plays a critical role in determining the accessibility of chromatin to transcriptional regulators and RNA polymerase complexes. This N-terminal domain is responsible for dimerization of histone deacetylase 1(HDAC1). The N-terminal domain also interacts and mediates the assembly of the HDAC1- MIDEAS complex.


Pssm-ID: 408020  Cd Length: 69  Bit Score: 97.84  E-value: 8.40e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1529650630   7 KSLDLMRRIFQNEITKELQQIMDRHIRTTFSPAIENLKKNGH--VVDQDVINDLYTSILDAAKVPFMRD 73
Cdd:pfam18192   1 KSLDLLRQVVQPAINKEIQEVIKKYMEKFFKPAAENIRENLGeeVVNEDLIQAACRSILENAKLLFSNG 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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