NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15240976|ref|NP_195763|]
View 

Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana]

Protein Classification

Got1/Sft2-like family vesicle transport protein( domain architecture ID 6026)

Got1/Sft2-like family vesicle transport protein such as Homo sapiens vesicle transport protein GOT1A, which may be involved in fusion of ER-derived transport vesicles with the Golgi complex

Gene Ontology:  GO:0015031|GO:0006888
PubMed:  10406798

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Got1 super family cl02130
Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the ...
 6-123 1.41e-16

Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments.


The actual alignment was detected with superfamily member COG5120:

Pssm-ID: 470475  Cd Length: 129  Bit Score: 70.59  E-value: 1.41e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240976   6 MNDRKKIGLGLTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKSTMQFFMKRQNYKGTISFGVGFFFVIIGWP 85
Cdd:COG5120   3 LMNLQKSGVVVTSIGFLFFLVGIFLFFDRALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLYRFP 82

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 15240976  86 ILGMMLETYGFFVLFSGFWPTLAVFAQKIPVLGWIIQQ 123
Cdd:COG5120  83 MFGFLLETLGLFLLFRDFIPTIRTFLRTLPLIGPYIDR 120
 
Name Accession Description Interval E-value
GOT1 COG5120
Membrane protein involved in Golgi transport [Intracellular trafficking and secretion];
6-123 1.41e-16

Membrane protein involved in Golgi transport [Intracellular trafficking and secretion];


Pssm-ID: 227450  Cd Length: 129  Bit Score: 70.59  E-value: 1.41e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240976   6 MNDRKKIGLGLTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKSTMQFFMKRQNYKGTISFGVGFFFVIIGWP 85
Cdd:COG5120   3 LMNLQKSGVVVTSIGFLFFLVGIFLFFDRALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLYRFP 82

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 15240976  86 ILGMMLETYGFFVLFSGFWPTLAVFAQKIPVLGWIIQQ 123
Cdd:COG5120  83 MFGFLLETLGLFLLFRDFIPTIRTFLRTLPLIGPYIDR 120
Got1 pfam04178
Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the ...
 15-115 4.61e-07

Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments.


Pssm-ID: 461210  Cd Length: 110  Bit Score: 45.17  E-value: 4.61e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240976    15 GLTGFGVFFSFLGIVFVFDKG------LLAMGNILFISGVSLTIGFKSTMQFFMKRQNYKGTISFGVGFFFVIigwpILG 88
Cdd:pfam04178   6 ICLLLGVLCFFLSFFLFVLAKprkfalLYTLGNILFLGSTGFLIGPKKQLKHMFSKERLPFTIAYLGSLLLTL----YFA 81

                          90       100
                  ....*....|....*....|....*....
gi 15240976    89 MMLETYGFFVLFS--GFWPTLAVFAQKIP 115
Cdd:pfam04178  82 LILKSYGLTLLFSiiQFLALVWYFLSYIP 110
 
Name Accession Description Interval E-value
GOT1 COG5120
Membrane protein involved in Golgi transport [Intracellular trafficking and secretion];
6-123 1.41e-16

Membrane protein involved in Golgi transport [Intracellular trafficking and secretion];


Pssm-ID: 227450  Cd Length: 129  Bit Score: 70.59  E-value: 1.41e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240976   6 MNDRKKIGLGLTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKSTMQFFMKRQNYKGTISFGVGFFFVIIGWP 85
Cdd:COG5120   3 LMNLQKSGVVVTSIGFLFFLVGIFLFFDRALLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLYRFP 82

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 15240976  86 ILGMMLETYGFFVLFSGFWPTLAVFAQKIPVLGWIIQQ 123
Cdd:COG5120  83 MFGFLLETLGLFLLFRDFIPTIRTFLRTLPLIGPYIDR 120
Got1 pfam04178
Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the ...
 15-115 4.61e-07

Got1/Sft2-like family; Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments.


Pssm-ID: 461210  Cd Length: 110  Bit Score: 45.17  E-value: 4.61e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15240976    15 GLTGFGVFFSFLGIVFVFDKG------LLAMGNILFISGVSLTIGFKSTMQFFMKRQNYKGTISFGVGFFFVIigwpILG 88
Cdd:pfam04178   6 ICLLLGVLCFFLSFFLFVLAKprkfalLYTLGNILFLGSTGFLIGPKKQLKHMFSKERLPFTIAYLGSLLLTL----YFA 81

                          90       100
                  ....*....|....*....|....*....
gi 15240976    89 MMLETYGFFVLFS--GFWPTLAVFAQKIP 115
Cdd:pfam04178  82 LILKSYGLTLLFSiiQFLALVWYFLSYIP 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH