F-box protein (DUF295) [Arabidopsis thaliana]
Protein Classification
F-box protein( domain architecture ID 10459082)
F-box protein containing a DUF295 domain, may function as the substrate-recognition component of a SCF(Skp1-cullin-F-box) E3 ubiquitin ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| DUF295 | pfam03478 | Protein of unknown function (DUF295); This domain is found in plant proteins of unknown ... |
297-348 | 1.67e-09 | ||
Protein of unknown function (DUF295); This domain is found in plant proteins of unknown function. It can be found in association with F-box domain pfam00646. : Pssm-ID: 460939 [Multi-domain] Cd Length: 57 Bit Score: 53.37 E-value: 1.67e-09
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| F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
18-60 | 3.88e-06 | ||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. : Pssm-ID: 425796 Cd Length: 43 Bit Score: 43.30 E-value: 3.88e-06
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| Name | Accession | Description | Interval | E-value | ||
| DUF295 | pfam03478 | Protein of unknown function (DUF295); This domain is found in plant proteins of unknown ... |
297-348 | 1.67e-09 | ||
Protein of unknown function (DUF295); This domain is found in plant proteins of unknown function. It can be found in association with F-box domain pfam00646. Pssm-ID: 460939 [Multi-domain] Cd Length: 57 Bit Score: 53.37 E-value: 1.67e-09
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| F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
18-60 | 3.88e-06 | ||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 43.30 E-value: 3.88e-06
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| FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
21-60 | 6.18e-05 | ||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 39.73 E-value: 6.18e-05
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| F-box_SF | cd09917 | F-box domain superfamily; This short domain is commonly found at the N-terminus of various ... |
19-53 | 1.54e-03 | ||
F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures. Pssm-ID: 438852 Cd Length: 35 Bit Score: 35.88 E-value: 1.54e-03
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| Name | Accession | Description | Interval | E-value | ||
| DUF295 | pfam03478 | Protein of unknown function (DUF295); This domain is found in plant proteins of unknown ... |
297-348 | 1.67e-09 | ||
Protein of unknown function (DUF295); This domain is found in plant proteins of unknown function. It can be found in association with F-box domain pfam00646. Pssm-ID: 460939 [Multi-domain] Cd Length: 57 Bit Score: 53.37 E-value: 1.67e-09
|
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| F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
18-60 | 3.88e-06 | ||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 43.30 E-value: 3.88e-06
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| FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
21-60 | 6.18e-05 | ||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 39.73 E-value: 6.18e-05
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| F-box-like | pfam12937 | F-box-like; This is an F-box-like family. |
18-53 | 5.75e-04 | ||
F-box-like; This is an F-box-like family. Pssm-ID: 463757 [Multi-domain] Cd Length: 45 Bit Score: 37.08 E-value: 5.75e-04
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| F-box_SF | cd09917 | F-box domain superfamily; This short domain is commonly found at the N-terminus of various ... |
19-53 | 1.54e-03 | ||
F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures. Pssm-ID: 438852 Cd Length: 35 Bit Score: 35.88 E-value: 1.54e-03
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