|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
967-1548 |
9.85e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 99.63 E-value: 9.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 967 LQEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLRE-ELEALRRQKGAREAEVLLLQQRVAALAEEK 1045
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEaELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1046 SRAQEkvtEKEVVKLQNDpQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAA 1125
Cdd:COG1196 298 ARLEQ---DIARLEERRR-ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1126 TEREVSDLTRQYEDEAAKARASQREKTELLRKIWALE-EENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYRG 1204
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEaLLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1205 AEEQLRSYQSELEALRRRGPQVEVK------EVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEiyqlkKEIQA 1278
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAAlaelleELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA-----GAVAV 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1279 LKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKkqvdLERERASQEEQIARKEEELSRVKERVVQQEVVRY 1358
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK----AGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1359 EEEP-GLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEA 1437
Cdd:COG1196 605 ASDLrEADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1438 REKVTHtqkvvlqqdpQQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQ 1517
Cdd:COG1196 685 AERLAE----------EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
570 580 590
....*....|....*....|....*....|.
gi 1519473553 1518 RLKSSLEEEsrskrELDVEVSRLEARLSELE 1548
Cdd:COG1196 755 ELPEPPDLE-----ELERELERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1012-1622 |
4.27e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.15 E-value: 4.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1012 QLREELEALRRQkgAREAEvlllqqRVAALAEEksraqEKVTEKEVVKLQNDpQLEAEYQQLQEDHQRQDQLREKQEEEL 1091
Cdd:COG1196 197 ELERQLEPLERQ--AEKAE------RYRELKEE-----LKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1092 SFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQ 1171
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1172 EKVREivrpdpKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRrgpqvEVKEVTKEVIkyktdpEMEKELQRL 1251
Cdd:COG1196 343 EEELE------EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE-----ELLEALRAAA------ELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1252 REEIVDKTRLIERCDLEIYQLKKEIQALKDTKpqVQTKEVVQEILQFQEdpQTKEEVASLRAKLSEEQKKQVDLERERAS 1331
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEE--EEEEEALEEAAEEEA--ELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1332 QEEQIARKEEELSRVKERVVQQE-----VVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEEL 1406
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEgflegVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1407 ERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRK 1486
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVT 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1487 LAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENH 1566
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1519473553 1567 KLQLERQNLQLETRRLQSEI--NMAATETRDLRNMTVADSGTNHDSRLWSLERELDDL 1622
Cdd:COG1196 722 EEEALEEQLEAEREELLEELleEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
818-1537 |
4.41e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 91.36 E-value: 4.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 818 RRSHVSKRARLQsPATKVKEEEAALAAKFTEVYAinrqrlqnLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRK 897
Cdd:PTZ00121 1062 AKAHVGQDEGLK-PSYKDFDFDAKEDNRADEATE--------EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEE 1132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 898 ELDEETERRRQlenEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQ 977
Cdd:PTZ00121 1133 ARKAEDARKAE---EARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAE 1209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 978 LRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEV 1057
Cdd:PTZ00121 1210 EERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1058 VKLQNDPQLEA-----EYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSD 1132
Cdd:PTZ00121 1290 KKADEAKKAEEkkkadEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1133 LTRQYED----EAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEq 1208
Cdd:PTZ00121 1370 EKKKEEAkkkaDAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE- 1448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1209 LRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEI---VDKTRLIERCDLEIYQLKKEIQALKDTKPQ 1285
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAkkkADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1286 VQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLR 1365
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1366 AEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQ 1445
Cdd:PTZ00121 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1446 KV--VLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVlSESVQVEKGDtEQEIQRLKSSL 1523
Cdd:PTZ00121 1689 KAaeALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK-AEEAKKDEEE-KKKIAHLKKEE 1766
|
730
....*....|....
gi 1519473553 1524 EEESRSKRELDVEV 1537
Cdd:PTZ00121 1767 EKKAEEIRKEKEAV 1780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
890-1396 |
8.20e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.00 E-value: 8.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 890 EEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQE 969
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE--LLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 970 ELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQ 1049
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1050 EKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATERE 1129
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1130 VSDLTRQYEDEAAKAR----ASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYR-- 1203
Cdd:COG1196 477 AALAELLEELAEAAARllllLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEdd 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1204 GAEEQLRSYQSE----------LEALRRRGPQVEVKEVTKEVIKYKT----DPEMEKELQRLREEIVDKTRLIERCDLEI 1269
Cdd:COG1196 557 EVAAAAIEYLKAakagratflpLDKIRARAALAAALARGAIGAAVDLvasdLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1270 YQLKK-------------EIQALKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQI 1336
Cdd:COG1196 637 RRAVTlagrlrevtlegeGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1337 ARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRR 1396
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
946-1640 |
9.68e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.12 E-value: 9.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 946 LEESFQQLQRTlAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLREE-LEALRRQK 1024
Cdd:TIGR02168 198 LERQLKSLERQ-AEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEkLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1025 GAREAEVLLLQQRVAALAEEKSRAQEKVTEKEvvklQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKE 1104
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQILR----ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1105 RAMAEGKITVKEVLKVE-----------------KDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAK 1167
Cdd:TIGR02168 353 LESLEAELEELEAELEElesrleeleeqletlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1168 VVVQEKVREIVRPDPKAES----------EVANLRLELVEQERKYRGAEEQLRSYQSELEALRR-----RGPQVEVKEVT 1232
Cdd:TIGR02168 433 AELKELQAELEELEEELEElqeelerleeALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlEGFSEGVKALL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1233 KEVIK-----------YKTDPEMEKELQRLREEIVDK--TRLIERCDLEIYQLKK---------EIQALKDTKPQVQTKE 1290
Cdd:TIGR02168 513 KNQSGlsgilgvlselISVDEGYEAAIEAALGGRLQAvvVENLNAAKKAIAFLKQnelgrvtflPLDSIKGTEIQGNDRE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1291 VVQEILQFQ---------------------------EDPQTKEEVA-SLRAKLS------------------EEQKKQVD 1324
Cdd:TIGR02168 593 ILKNIEGFLgvakdlvkfdpklrkalsyllggvlvvDDLDNALELAkKLRPGYRivtldgdlvrpggvitggSAKTNSSI 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1325 LERERAsqeeqIARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLE 1404
Cdd:TIGR02168 673 LERRRE-----IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1405 ELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLqqdpQQAREHALLRLQLEEEQHRRQLLEGELETLR 1484
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELTLLNEEAANLR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1485 RKLAALEKAEVKEKVVLSESVQvEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREE 1564
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEE-QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1519473553 1565 NHKLQLERQNLQLETRRLQSEINMAATETRDLRNMtvadsGTNHDSRLWSL-ERELDDLKRLSKDKDLEIDELQKRL 1640
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVR-----IDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRL 974
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
758-1592 |
3.84e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 3.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 758 DSLSQMETKLKNQKNLLDEIASREQEVQKIcanSQQYQQAVKDYELEAEKLRSLLDLENGR-RSHVSKRARLQSPATKVK 836
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSL---ERQAEKAERYKELKAELRELELALLVLRlEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 837 EEEAALAAkftevyainrqRLQNLEFALNLLR-QQPEVEvthetlqrnrpdsgvEEAWKIRKELDEETERRRQLENEVKS 915
Cdd:TIGR02168 253 EELEELTA-----------ELQELEEKLEELRlEVSELE---------------EEIEELQKELYALANEISRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 916 TQEEIWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYvvk 995
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDE--LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL--- 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 996 evlriepdRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQND-PQLEAEYQQLQ 1074
Cdd:TIGR02168 382 --------ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1075 EDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQR----- 1149
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvde 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1150 -------------------EKTELLRKIWALEEENAK---------VVVQEKVREIVRPDPKAESEVANLRLELVEQERK 1201
Cdd:TIGR02168 534 gyeaaieaalggrlqavvvENLNAAKKAIAFLKQNELgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1202 YRGAEEQL-------RSYQSELEALRRRGPQVEVkeVTKE--------VIKYKTDPEMEKELQRlREEIVDKTRLIERCD 1266
Cdd:TIGR02168 614 LRKALSYLlggvlvvDDLDNALELAKKLRPGYRI--VTLDgdlvrpggVITGGSAKTNSSILER-RREIEELEEKIEELE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1267 LEIYQLKKEIQALKDTKPQVQTKEV---VQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEEL 1343
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1344 SRVKERVVQQEVVRYEeepgLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERErqaRREAEREVQRL 1423
Cdd:TIGR02168 771 EEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR---IAATERRLEDL 843
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1424 QQRLAALEQEEAEAREKVTHTQkvvlQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKaevkekvvlse 1503
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELE----ELIEELESELEALLNERASLEEALALLRSELEELSEELRELES----------- 908
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1504 svqvEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEfhnsksSKELDFLREENHKLQLERQNLQLETRRLQ 1583
Cdd:TIGR02168 909 ----KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY------SLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
890
....*....|....*
gi 1519473553 1584 SEI------NMAATE 1592
Cdd:TIGR02168 979 NKIkelgpvNLAAIE 993
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
761-1592 |
1.41e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 86.28 E-value: 1.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 761 SQMETKLKNQKNLLDEIASREQEVQKICANSQQYQQAVKDYELEAEKLRSLLDlENGRRSHVSKRARLQSPATKVKEEEA 840
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLK-EKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 841 ALAAKftevyainRQRLQNLEFALNLLRQQ-PEVEVTHETLQRNRPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEE 919
Cdd:TIGR02169 245 QLASL--------EEELEKLTEEISELEKRlEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 920 IWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALE---QETRDGGQEYVVK- 995
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEE--LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkefAETRDELKDYREKl 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 996 EVLRIEPDRAQAdEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQE 1075
Cdd:TIGR02169 395 EKLKREINELKR-ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1076 DHQRQDQLrekqEEELSFLQDKLKRLEKERAMAEGKI-------------------TVKEVLKVEKDAATEREVSDLTRQ 1136
Cdd:TIGR02169 474 LKEEYDRV----EKELSKLQRELAEAEAQARASEERVrggraveevlkasiqgvhgTVAQLGSVGERYATAIEVAAGNRL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1137 ----YEDEAAKARASQREKTELLRKiwaleeenAKVVVQEKVREIVRP-DPKAESEVANLRLELVEQERKYRGAEEQ-LR 1210
Cdd:TIGR02169 550 nnvvVEDDAVAKEAIELLKRRKAGR--------ATFLPLNKMRDERRDlSILSEDGVIGFAVDLVEFDPKYEPAFKYvFG 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1211 S--YQSELEALRRRGPQVEVKEVTKEVIK---------------YKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLK 1273
Cdd:TIGR02169 622 DtlVVEDIEAARRLMGKYRMVTLEGELFEksgamtggsraprggILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIE 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1274 KEI----QALKDTKPQVQTKEVVQEILQfQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKER 1349
Cdd:TIGR02169 702 NRLdelsQELSDASRKIGEIEKEIEQLE-QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1350 VvqqevvryeEEPglraEASAFAESIDVELRQIDKLRAELRRLQRRrtelerqleelererqaRREAEREVQRLQQRLAA 1429
Cdd:TIGR02169 781 L---------NDL----EARLSHSRIPEIQAELSKLEEEVSRIEAR-----------------LREIEQKLNRLTLEKEY 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1430 LEQEEAEAREKVTHTQkvvLQQDPQQAREHaLLRLQLEEEQHRRQLLEGELETLRRKLAALEKaEVKEkvvlsesVQVEK 1509
Cdd:TIGR02169 831 LEKEIQELQEQRIDLK---EQIKSIEKEIE-NLNGKKEELEEELEELEAALRDLESRLGDLKK-ERDE-------LEAQL 898
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1510 GDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEfHNSKSSKELDFLREENHKLQLERQNLQLETRRLQsEINMA 1589
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-DPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE-PVNML 976
|
...
gi 1519473553 1590 ATE 1592
Cdd:TIGR02169 977 AIQ 979
|
|
| SH3_10 |
pfam17902 |
SH3 domain; This entry represents an SH3 domain. |
390-453 |
3.34e-16 |
|
SH3 domain; This entry represents an SH3 domain.
Pssm-ID: 407754 Cd Length: 65 Bit Score: 74.61 E-value: 3.34e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1519473553 390 PLKYRRETPLKPIPVEALCDFEGEQGLISRGYSYTLQKNNG-ESWELMDSAGNKLIAPAVCFVIP 453
Cdd:pfam17902 1 PLKQRRSPVTRPIPVKALCDYKQGEVTVEKGEECTLLDNSDrEKWKVQTSSGVEKLVPSVCFLIP 65
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
696-1493 |
1.36e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 1.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 696 DLERQEAEVHKLGQRFNNLRQQVERrAQSLQSAKAAYEH---------FHRGHDHVLQFLVSIPSYEPQETDSLSQMETK 766
Cdd:TIGR02168 187 NLDRLEDILNELERQLKSLERQAEK-AERYKELKAELRElelallvlrLEELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 767 LKNQKNLLDEIASREQEVQKICANSQQYQQAVKDYELEAEKLR-SLLDLENGRRSHVSKRARLQSPATKVKEEEAALAAK 845
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILReRLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 846 FTEVyainRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRN 925
Cdd:TIGR02168 346 LEEL----KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 926 QGPQESVVRKEVLKKVpdpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQE-------------- 991
Cdd:TIGR02168 422 EIEELLKKLEEAELKE----LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERElaqlqarldslerl 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 992 ------------YVVKEVLRIEPDRAQADEVLQLREELE-ALRRQKGAREAEVLL--LQQRVAALAEEKSRAQEKVT--E 1054
Cdd:TIGR02168 498 qenlegfsegvkALLKNQSGLSGILGVLSELISVDEGYEaAIEAALGGRLQAVVVenLNAAKKAIAFLKQNELGRVTflP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1055 KEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFL-----------------QDKLKRLEK---------ERAMA 1108
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnaLELAKKLRPgyrivtldgDLVRP 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1109 EGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEkvreivrpdPKAESEV 1188
Cdd:TIGR02168 658 GGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL---------EELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1189 ANLRLELVEQERKYRGAEEQLRSYQSELEALrrrgpQVEVKEVTKEVIKYKTD-PEMEKELQRLREEIvdkTRLIERCDL 1267
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTEL-----EAEIEELEERLEEAEEElAEAEAEIEELEAQI---EQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1268 EIYQLKKEIQALKDTKPQVQTKEVVQEILQFQEDpQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVK 1347
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERRIA-ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1348 ERVVQQEVVRYEeepgLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELErqleelererqaRREAEREVQRLQQRL 1427
Cdd:TIGR02168 880 NERASLEEALAL----LRSELEELSEELRELESKRSELRRELEELREKLAQLE------------LRLEGLEVRIDNLQE 943
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1519473553 1428 AALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRL-------------QLEEEQHRRQLLEGELETLRRKLAALEKA 1493
Cdd:TIGR02168 944 RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKikelgpvnlaaieEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
987-1577 |
4.08e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.63 E-value: 4.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 987 DGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKG---AREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQND 1063
Cdd:PRK03918 144 DESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEkfiKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1064 PQLEAEYQQLQEDHQRQDQLR---EKQEEELSFLQDKLKRLEKERAMAEGKIT-----VKEVLKVEKDAATEREVSDLTR 1135
Cdd:PRK03918 224 EKLEKEVKELEELKEEIEELEkelESLEGSKRKLEEKIRELEERIEELKKEIEeleekVKELKELKEKAEEYIKLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1136 QYEDEAAKArasQREKTELLRKIWALEEENAKVvvqEKVREIVRPDPKAESEVANLRLELVEQERKYrgaeEQLRSYQSE 1215
Cdd:PRK03918 304 EYLDELREI---EKRLSRLEEEINGIEERIKEL---EEKEERLEELKKKLKELEKRLEELEERHELY----EEAKAKKEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1216 LEALRRRGPQVEVKEVTKEVikyktdPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQ------TK 1289
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKEL------EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgrelTE 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1290 EVVQEILQfqedpQTKEEVASLRAKLSEEQKKQVDLeRERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLRAEAS 1369
Cdd:PRK03918 448 EHRKELLE-----EYTAELKRIEKELKEIEEKERKL-RKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELE 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1370 AFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVthtqkvvL 1449
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER-------L 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1450 QQDPQQAREHALLR---LQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSEsvqVEKGDTEQEIQRLKSSLEEE 1526
Cdd:PRK03918 595 KELEPFYNEYLELKdaeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE---LEKKYSEEEYEELREEYLEL 671
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1519473553 1527 SRskreldvEVSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQL 1577
Cdd:PRK03918 672 SR-------ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
993-1656 |
1.45e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.71 E-value: 1.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 993 VVKEVLRIEPDRAQAdevlqlrEELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQND-PQLEAEYQ 1071
Cdd:TIGR02169 196 KRQQLERLRREREKA-------ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEiSELEKRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1072 QLQED-HQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKItvkevlkvekdAATEREVSDLTRQYEDEAAKARASQRE 1150
Cdd:TIGR02169 269 EIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSI-----------AEKERELEDAEERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1151 KTELLRKIwalEEENAKVvvqEKVREIVRpdpKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRgpqvevke 1230
Cdd:TIGR02169 338 IEELEREI---EEERKRR---DKLTEEYA---ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE-------- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1231 vtkevikyktDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEilqfQEDPQTKEEVAS 1310
Cdd:TIGR02169 401 ----------INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE----WKLEQLAADLSK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1311 LRAKLSEEQKKQVDLERERASQEEQIARKE-------------------------------EELSRVKER---------- 1349
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEaqaraseervrggraveevlkasiqgvhgtvAQLGSVGERyataievaag 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1350 ------VVQQEVV---------------------------RYEEEPGLRAEASAFA------------------------ 1372
Cdd:TIGR02169 547 nrlnnvVVEDDAVakeaiellkrrkagratflplnkmrdeRRDLSILSEDGVIGFAvdlvefdpkyepafkyvfgdtlvv 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1373 ESIDVELRQIDKLR-----AEL----------RRLQRRRTELERQLEELERERQARREA-EREVQRLQQRLAALEQEEAE 1436
Cdd:TIGR02169 627 EDIEAARRLMGKYRmvtleGELfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGlKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1437 AREKVTHTQKVV--LQQDPQQ-AREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEkAEVKEKVVLSESVQVEKGDTE 1513
Cdd:TIGR02169 707 LSQELSDASRKIgeIEKEIEQlEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE-ARIEELEEDLHKLEEALNDLE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1514 QEIQRlkSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEINMAATET 1593
Cdd:TIGR02169 786 ARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1519473553 1594 RDLrnmtvADSGTNHDSRLWSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRENHLRR 1656
Cdd:TIGR02169 864 EEL-----EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
696-1255 |
2.74e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 2.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 696 DLERQEAEVHKLGQRFNNLRQQVERRAQSLQSAKAAYEhfhrghdhvlqflvsipsyepQETDSLSQMETKLKNQKNLLD 775
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEY---------------------ELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 776 EIASREQEVQKicansQQYQQAVKDYELEAEKLRSLLDLENGRRSHVSKRARLQSPATKVKEEEAALAAKFTEVYAINRQ 855
Cdd:COG1196 313 ELEERLEELEE-----ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 856 RLQNLEFALNLLRQQPEVEVTHETLQRNRpdsgveeawkirKELDEETERRRQLENEVKSTQEEIwtlrnQGPQESVVRK 935
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERL------------ERLEEELEELEEALAELEEEEEEE-----EEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 936 EVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQ-ETRDGGQEYVVKEVLRIEPDRAQADEVLQLR 1014
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEaEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1015 EELEALRRQKGAREAEVLL------LQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQR----QDQLR 1084
Cdd:COG1196 531 GVEAAYEAALEAALAAALQnivvedDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVdlvaSDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1085 EKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEE 1164
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1165 NAKVVVQEKVREIvrpdpKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEM 1244
Cdd:COG1196 691 EELELEEALLAEE-----EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|.
gi 1519473553 1245 EKELQRLREEI 1255
Cdd:COG1196 766 ERELERLEREI 776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
943-1597 |
7.10e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 7.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 943 DPVLEESFQQLQRTLAEEQHKnqllqEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVL-QLREELEALR 1021
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREKA-----ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELeKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1022 RQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQdqlREKQEEELSFLQDKLKRL 1101
Cdd:TIGR02169 265 KRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER---LAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1102 EKEraMAEGKITVKEVLKVEKDAATEREvsDLTRQYEDEAAKARASQREKTELLRKIWALeeenakvvvQEKVREIVRPD 1181
Cdd:TIGR02169 342 ERE--IEEERKRRDKLTEEYAELKEELE--DLRAELEEVDKEFAETRDELKDYREKLEKL---------KREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1182 PKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALrrrgpQVEVKEVTKEVIKYKTDPE-MEKELQRLREEIVDKTR 1260
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK-----ALEIKKQEWKLEQLAADLSkYEQELYDLKEEYDRVEK 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1261 LIERCDLEIYQLKKEIQALKDTKPQVQTKE------------VVQEILQFQEDPQTKEEVAS------------LRAKLS 1316
Cdd:TIGR02169 484 ELSKLQRELAEAEAQARASEERVRGGRAVEevlkasiqgvhgTVAQLGSVGERYATAIEVAAgnrlnnvvveddAVAKEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1317 EEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQ---EVVRYEEE-------------------------------- 1361
Cdd:TIGR02169 564 IELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGfavDLVEFDPKyepafkyvfgdtlvvedieaarrlmgkyrmvt 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1362 --------------------------PGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERqarRE 1415
Cdd:TIGR02169 644 legelfeksgamtggsraprggilfsRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI---GE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1416 AEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQA--------REHALLRLQLEEEQHRRQLLEGELETLRRKL 1487
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKelearieeLEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1488 AALEKAEVKEKVVLSE------SVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFL 1561
Cdd:TIGR02169 801 SKLEEEVSRIEARLREieqklnRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
730 740 750
....*....|....*....|....*....|....*.
gi 1519473553 1562 REENHKLQLERQNLQLETRRLQSEINMAATETRDLR 1597
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1004-1342 |
7.66e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 7.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1004 RAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEkevvklqndpqLEAEYQQLQEDHQRQDQL 1083
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE-----------IEKEIEQLEQEEEKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1084 REKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATE-----------REVSDLTRQYEDEAAKARASQREKT 1152
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNdlearlshsriPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1153 ELLRKIwALEEENAKVVVQEKVREIVRPDPKAES---EVANLRLELVEQERKYRGAEEQLRSYQSELEALRRrgpqvEVK 1229
Cdd:TIGR02169 819 QKLNRL-TLEKEYLEKEIQELQEQRIDLKEQIKSiekEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-----ERD 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1230 EVTKEVikyktdPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQT--------KEVVQEILQFQED 1301
Cdd:TIGR02169 893 ELEAQL------RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEipeeelslEDVQAELQRVEEE 966
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1519473553 1302 PQTKEEV--------ASLRAKLSEEQKKQVDLERERASQEEQIARKEEE 1342
Cdd:TIGR02169 967 IRALEPVnmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
586-1279 |
8.87e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 8.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 586 LRTRVEDTNRKYEHLLQLL-DLAQEKVDVANRLEKSLQQSWELLATHENHLNQDDTVPES-----------SRVLDSKGQ 653
Cdd:TIGR02168 279 LEEEIEELQKELYALANEIsRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEElaeleekleelKEELESLEA 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 654 ELAAMACELQAQKSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQEAEVHKLGQRFNNLRQQVERRAQSLQSAK---- 729
Cdd:TIGR02168 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkel 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 730 -AAYEHFHRGHDHVLQFLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIASREQEVQKICANSQQYQQAVKDYELEAEKL 808
Cdd:TIGR02168 439 qAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 809 RSLLDL-------ENGRRSHVSK--RARLQSPAtkVKEEEAALAAkfteVYAINRQRLQNLEFALNLLRQQPEVEVTHET 879
Cdd:TIGR02168 519 SGILGVlselisvDEGYEAAIEAalGGRLQAVV--VENLNAAKKA----IAFLKQNELGRVTFLPLDSIKGTEIQGNDRE 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 880 LQRNRP------DSGVEEAWKIRK-------------ELDEETERRRQLENEVK--STQEEIWTlrnqgPQESVVRKEVL 938
Cdd:TIGR02168 593 ILKNIEgflgvaKDLVKFDPKLRKalsyllggvlvvdDLDNALELAKKLRPGYRivTLDGDLVR-----PGGVITGGSAK 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 939 KKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDggqeyvvkevLRIEPDRAQaDEVLQLREELE 1018
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ----------LRKELEELS-RQISALRKDLA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1019 ALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEvvklQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKL 1098
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE----EELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1099 KRLEKERAMAEGKITVKEvlkvEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIV 1178
Cdd:TIGR02168 813 TLLNEEAANLRERLESLE----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1179 RpdPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRR--GPQVEVKEVTKEV-IKYKTDPEMEKELQRLREEi 1255
Cdd:TIGR02168 889 L--ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRleGLEVRIDNLQERLsEEYSLTLEEAEALENKIED- 965
|
730 740
....*....|....*....|....
gi 1519473553 1256 vdktrLIERCDLEIYQLKKEIQAL 1279
Cdd:TIGR02168 966 -----DEEEARRRLKRLENKIKEL 984
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
946-1588 |
5.36e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.60 E-value: 5.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 946 LEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLRE-ELEALRRQK 1024
Cdd:TIGR00618 251 AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMrSRAKLLMKR 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1025 GAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDpQLEAEYQQLQEDHQRQDQLrEKQEEELSFLQDKLKRLEKE 1104
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE-ISCQQHTLTQHIHTLQQQK-TTLTQKLQSLCKELDILQRE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1105 RAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKA 1184
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1185 ESEVANLRLELVEQERKYrgaEEQLRSYQSELEALRRRGP-QVEVKEVTKEVIKYKTDPE-MEKELQRLREEIVDKTRLI 1262
Cdd:TIGR00618 489 KAVVLARLLELQEEPCPL---CGSCIHPNPARQDIDNPGPlTRRMQRGEQTYAQLETSEEdVYHQLTSERKQRASLKEQM 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1263 ERCDLEIYQLKKEIQALKDTKPQVQTKEvvqEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEE 1342
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNIT---VRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELA 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1343 LSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQR 1422
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1423 LQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQ-------HRRQLLEGELETLRRKLA------A 1489
Cdd:TIGR00618 723 IENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVtaalqtgAELSHLAAEIQFFNRLREedthllK 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1490 LEKAEVKEKVVLSESV-QVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKL 1568
Cdd:TIGR00618 803 TLEAEIGQEIPSDEDIlNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGIN 882
|
650 660
....*....|....*....|
gi 1519473553 1569 QLERQNLQLETRRLQSEINM 1588
Cdd:TIGR00618 883 QIKIQFDGDALIKFLHEITL 902
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1037-1394 |
1.37e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1037 RVAALAEEKSRAQEKVTEKEVVKLQndpqLEAEYQQLQEDHQRQDQLREKQEEELSF--LQDKLKRLEKERAMAEGKITV 1114
Cdd:TIGR02169 161 EIAGVAEFDRKKEKALEELEEVEEN----IERLDLIIDEKRQQLERLRREREKAERYqaLLKEKREYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1115 KEVLKVEKDAAT-EREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAkVVVQEKVREIVRPDPKAESEVANLRL 1193
Cdd:TIGR02169 237 RQKEAIERQLASlEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-LRVKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1194 ELVEQERKYRGAEEQLRSYQSELEALRRR--GPQVEVKEVTKEVIKYKTD--------PEMEKELQRLREEIVDKTRLIE 1263
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREieEERKRRDKLTEEYAELKEEledlraelEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1264 RCDLEIYQLKKEIQALKDTKPQVQtkevvqeilqfqedpqtkEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEEL 1343
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLS------------------EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1519473553 1344 SRVKERV--VQQEVVRYEEEpglraeasafaesidvelrqIDKLRAELRRLQR 1394
Cdd:TIGR02169 458 EQLAADLskYEQELYDLKEE--------------------YDRVEKELSKLQR 490
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
904-1424 |
2.53e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 904 ERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPD-PVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALE 982
Cdd:PRK03918 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKElEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 983 QETRDggQEYVVKEVLRIEPDraqADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKlQN 1062
Cdd:PRK03918 273 KEIEE--LEEKVKELKELKEK---AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK-KK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1063 DPQLEAEYQQLQEDHQRQDQLREKQEEeLSFLQDKLKRLEKERAMAEGKITVKEVLKVEKD--------AATEREVSDLT 1134
Cdd:PRK03918 347 LKELEKRLEELEERHELYEEAKAKKEE-LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEiskitariGELKKEIKELK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1135 RQYED-EAAKARA-------SQREKTELLRKiWALEEENakvvVQEKVREIVRPDPKAESEVANLRLELVEQER--KYRG 1204
Cdd:PRK03918 426 KAIEElKKAKGKCpvcgrelTEEHRKELLEE-YTAELKR----IEKELKEIEEKERKLRKELRELEKVLKKESEliKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1205 AEEQLRSYQSELEALRR----------RGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERcdlEIYQLKK 1274
Cdd:PRK03918 501 LAEQLKELEEKLKKYNLeelekkaeeyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE---ELAELLK 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1275 EIQALKDTkpqvQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQE 1354
Cdd:PRK03918 578 ELEELGFE----SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1355 VvRYEEEPGLRAEASAFAESidvelRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQ 1424
Cdd:PRK03918 654 K-KYSEEEYEELREEYLELS-----RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
896-1637 |
1.15e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.52 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 896 RKELDEETERRRQLENEV------KSTQEEIwtLRNQGPQESVVRKEVLKKvpDPVLEE------SFQQLQ-RTLAEEQH 962
Cdd:pfam15921 134 RRESQSQEDLRNQLQNTVheleaaKCLKEDM--LEDSNTQIEQLRKMMLSH--EGVLQEirsilvDFEEASgKKIYEHDS 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 963 KNQLLQEEL-EALQLQLRALEQE-TRDGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAA 1040
Cdd:pfam15921 210 MSTMHFRSLgSAISKILRELDTEiSYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASS 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1041 laeEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITvkevlkv 1120
Cdd:pfam15921 290 ---ARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT------- 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1121 ekDAATER-EVSDLTRQYEDEAAKARAS--QREKTELLRKiwaleEENAKVVVQEKVREIVRPDPKAESEVANLRLELVE 1197
Cdd:pfam15921 360 --EARTERdQFSQESGNLDDQLQKLLADlhKREKELSLEK-----EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLE 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1198 QERKYRGAE------EQLRSYQSELEALRRRGP---QVE-VKEVTKEVIKYKTDPEM-----EKELQRLREEIVDKTRLI 1262
Cdd:pfam15921 433 ALLKAMKSEcqgqmeRQMAAIQGKNESLEKVSSltaQLEsTKEMLRKVVEELTAKKMtlessERTVSDLTASLQEKERAI 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1263 ERCDLEIYQLK-------KEIQALKDTKPQVQTKEVVQEILQFQEDPQTK------EEVASLRAKLSEEQKKQVDLERER 1329
Cdd:pfam15921 513 EATNAEITKLRsrvdlklQELQHLKNEGDHLRNVQTECEALKLQMAEKDKvieilrQQIENMTQLVGQHGRTAGAMQVEK 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1330 ASQEEQIARKEEELSRVKervvqqeVVRYEEEPGLRAEAsafAESIDVELRQIDKLRAELRRLQrrrtelerqleelere 1409
Cdd:pfam15921 593 AQLEKEINDRRLELQEFK-------ILKDKKDAKIRELE---ARVSDLELEKVKLVNAGSERLR---------------- 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1410 rqARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQhrrqlleGELETLRRKLAA 1489
Cdd:pfam15921 647 --AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ-------SELEQTRNTLKS 717
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1490 LEKAEvkekvvlSESVQVEKGdteqeiqrlkssLEEESRSKREldvEVSRLEARLSELEFHNSKSSKELDFLREENHKLQ 1569
Cdd:pfam15921 718 MEGSD-------GHAMKVAMG------------MQKQITAKRG---QIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLS 775
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1519473553 1570 LERQNLQLETRRLQSEINMAATETRDLR----NMTVA-DSGTNHDSRLWS-LERELDDLKRLSKDKDLEIDELQ 1637
Cdd:pfam15921 776 QELSTVATEKNKMAGELEVLRSQERRLKekvaNMEVAlDKASLQFAECQDiIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1194-1583 |
1.18e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.78 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1194 ELVEQERKYRGAEEQLRSYQSELEALRRRgpQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLK 1273
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAE--LEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1274 KEIQALKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQ 1353
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1354 EVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAE-------------LRRLQRRRTELERQLEELERERQARREAEREV 1420
Cdd:COG4717 240 ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlgllaLLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1421 QRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEE-EQHRRQLLE----GELETLRRKLAALEKAEV 1495
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEElEQEIAALLAeagvEDEEELRAALEQAEEYQE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1496 KE--------------KVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEfhnskSSKELDFL 1561
Cdd:COG4717 400 LKeeleeleeqleellGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE-----EDGELAEL 474
|
410 420
....*....|....*....|..
gi 1519473553 1562 REENHKLQLERQNLQLETRRLQ 1583
Cdd:COG4717 475 LQELEELKAELRELAEEWAALK 496
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1005-1223 |
2.08e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.54 E-value: 2.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1005 AQADEVLQLREELEALRRqkgareaEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLR 1084
Cdd:COG4913 225 EAADALVEHFDDLERAHE-------ALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1085 EKQEEELSFLQDKLKRLEKERAMAEGKItvkEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEE 1164
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREEL---DELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1519473553 1165 NAKV--VVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRG 1223
Cdd:COG4913 375 LPASaeEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
804-1588 |
3.22e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.83 E-value: 3.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 804 EAEKLRSLLDLENGRRSHVSKRARLQSPATKVKEEEAalaakfTEVYAINRQRLQNLEFALNLLRQQPEVEVTHETLQRN 883
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEL------EEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQ 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 884 RPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQgpQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHK 963
Cdd:pfam02463 259 EIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE--LLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 964 NQLLQEELEALQLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEvlqlREELEALRRQKGAREAEVLLLQQRVAALAE 1043
Cdd:pfam02463 337 IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE----SERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1044 EKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEgKITVKEVLKVEKD 1123
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ-LVKLQEQLELLLS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1124 AATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVAN---LRLELVEQER 1200
Cdd:pfam02463 492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADeveERQKLVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1201 KYRGAEEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQR-----LREEIVDKTRLIERCDLEIYQLKKE 1275
Cdd:pfam02463 572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRakvveGILKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1276 IQALKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEV 1355
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1356 VRYEEEPGLRAEASAFAESIDVELR--------------QIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQ 1421
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRlkkeekeeekselsLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELK 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1422 R---LQQRLAALEQEEAEAREKVTHTQKVVLQQDpQQAREHALLRLQLEEEQHRRQLLEGELETLRRKlaaLEKAEVKEK 1498
Cdd:pfam02463 812 EeaeLLEEEQLLIEQEEKIKEEELEELALELKEE-QKLEKLAEEELERLEEEITKEELLQELLLKEEE---LEEQKLKDE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1499 VVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQLE 1578
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLL 967
|
810
....*....|
gi 1519473553 1579 TRRLQSEINM 1588
Cdd:pfam02463 968 AKEELGKVNL 977
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
835-1181 |
3.93e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.21 E-value: 3.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 835 VKEEEAALAAKFTEVYaiNRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKE-LDEETERRRQLENEV 913
Cdd:pfam17380 245 LAEDVTTMTPEYTVRY--NGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEeKAREVERRRKLEEAE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 914 KSTQEE------IWTLRNQGPQE-----SVVRKEVLKKVPDPVLEESF-------QQLQRTLAEEQHKNQLLQEELEALQ 975
Cdd:pfam17380 323 KARQAEmdrqaaIYAEQERMAMErerelERIRQEERKRELERIRQEEIameisrmRELERLQMERQQKNERVRQELEAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 976 LQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQLRE----ELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEK 1051
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEerarEMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1052 VTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRlEKERAMAEgkitvkEVLKVEKDAATEREVS 1131
Cdd:pfam17380 483 KRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYE-EERRREAE------EERRKQQEMEERRRIQ 555
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1519473553 1132 DLTRQYEDEAAKARASQREKtELLRKIWALEEENAKVVVQEK---VREIVRPD 1181
Cdd:pfam17380 556 EQMRKATEERSRLEAMERER-EMMRQIVESEKARAEYEATTPittIKPIYRPR 607
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
967-1493 |
5.31e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 5.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 967 LQEELEALQLQLRALEQeTRDGGQEYvvkevlriepdRAQADEVLQLREELEALRRQKGAREAEvlLLQQRVAALAEEKS 1046
Cdd:COG4913 240 AHEALEDAREQIELLEP-IRELAERY-----------AAARERLAELEYLRAALRLWFAQRRLE--LLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1047 RAQEKVTEKEVVKLQndpqLEAEYQQLQEDHQRQDQLREKQ-EEELSFLQDKLKRLEKERAMAEGKI---------TVKE 1116
Cdd:COG4913 306 RLEAELERLEARLDA----LREELDELEAQIRGNGGDRLEQlEREIERLERELEERERRRARLEALLaalglplpaSAEE 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1117 VLKVEKDAATERE-VSDLTRQYEDEAAKARAS----QREKTELLRKIWALEEeNAKVV---VQEKVREIVRPDPKAESE- 1187
Cdd:COG4913 382 FAALRAEAAALLEaLEEELEALEEALAEAEAAlrdlRRELRELEAEIASLER-RKSNIparLLALRDALAEALGLDEAEl 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1188 --VANLrLELVEQERKYRGAEEQL------------RSYQSELEALRRRGPQVEVkeVTKEVIKYKTDPEMEK-ELQRLR 1252
Cdd:COG4913 461 pfVGEL-IEVRPEEERWRGAIERVlggfaltllvppEHYAAALRWVNRLHLRGRL--VYERVRTGLPDPERPRlDPDSLA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1253 EEIVDKT---------RLIERCDleiYQLKKEIQALKDTK----PQVQTKevvQEILQFQEDPQTKEEVASL-----RAK 1314
Cdd:COG4913 538 GKLDFKPhpfrawleaELGRRFD---YVCVDSPEELRRHPraitRAGQVK---GNGTRHEKDDRRRIRSRYVlgfdnRAK 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1315 LSEEQKKQVDLERERASQEEQIARKEEELSRVKER-VVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQ 1393
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERrEALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1394 RRRtelERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRR 1473
Cdd:COG4913 692 EQL---EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
570 580
....*....|....*....|
gi 1519473553 1474 QLLEGELETLRRKLAALEKA 1493
Cdd:COG4913 769 ENLEERIDALRARLNRAEEE 788
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1007-1649 |
1.07e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1007 ADEVLQLREELEALRRQKGAreaevllLQQRVAALAEEKSRAQEKVTEKEVvklqNDPQLEAEYQQLQEDHQRQDQLREK 1086
Cdd:TIGR02168 231 VLRLEELREELEELQEELKE-------AEEELEELTAELQELEEKLEELRL----EVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1087 QEEELSFLQDKLKRLEKERAMAEGKItvkevlkvekdaaterevsDLTRQYEDEAAKARASQREKTELLRKiwaleeena 1166
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQL-------------------EELESKLDELAEELAELEEKLEELKE--------- 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1167 kvvvqekvreivrpdpkaesEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRR--GPQVEVKEVTKEVIKYKTDPEM 1244
Cdd:TIGR02168 352 --------------------ELESLEAELEELEAELEELESRLEELEEQLETLRSKvaQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1245 -EKELQRLREEIVDKTRLIERCDLE--IYQLKKEIQALKDTKPQVQTKEVVQEILQFQEDpQTKEEVASLRAKLSEEQKK 1321
Cdd:TIGR02168 412 lEDRRERLQQEIEELLKKLEEAELKelQAELEELEEELEELQEELERLEEALEELREELE-EAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1322 QVDLERERASQEE------QIARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVE-----------LRQIDK 1384
Cdd:TIGR02168 491 LDSLERLQENLEGfsegvkALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVEnlnaakkaiafLKQNEL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1385 LRA---ELRRLQRRRTELERQLEELERERQARREAERE-------------------VQRLQQRLAALEQEEAEAR---- 1438
Cdd:TIGR02168 571 GRVtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVkfdpklrkalsyllggvlvVDDLDNALELAKKLRPGYRivtl 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1439 --EKVTH----TQKVVLQQDPQQAREHAL--LRLQLEEEQHRRQLLEGELETLRRKLAALEKaEVKEKVVLSESVQVEKG 1510
Cdd:TIGR02168 651 dgDLVRPggviTGGSAKTNSSILERRREIeeLEEKIEELEEKIAELEKALAELRKELEELEE-ELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1511 DTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEINMAA 1590
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 1519473553 1591 TETRDLRnmtvaDSGTNHDSRLWSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQ 1649
Cdd:TIGR02168 810 AELTLLN-----EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
586-1392 |
1.56e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 586 LRTRVEDTNRKYEHLLQLLDLAQEKVDVAnrlekslqqSWELLATHENHLNQDDTVPessrvldskgQELAAMACELQAQ 665
Cdd:TIGR02169 196 KRQQLERLRREREKAERYQALLKEKREYE---------GYELLKEKEALERQKEAIE----------RQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 666 KSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQ-EAEVHKLGQRFNNLRQQVERRAQSLQSAKAayehfhrghdHVLQ 744
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEE----------RLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 745 FLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIASRE-------QEVQKICANSQQYQQAVKDYELEAEKLRSLLDleng 817
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlrAELEEVDKEFAETRDELKDYREKLEKLKREIN---- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 818 rrSHVSKRARLQSPATKVKEEEAALAAKftevyaINRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGveeawKIRK 897
Cdd:TIGR02169 403 --ELKRELDRLQEELQRLSEELADLNAA------IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS-----KYEQ 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 898 ELDEETERRRQLENEVKSTQEEIWTLRNQgpQESVVRKEVLKKVPDPVLEESFQQLQRTLAE-----EQHKN-------- 964
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQ--ARASEERVRGGRAVEEVLKASIQGVHGTVAQlgsvgERYATaievaagn 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 965 -----------------QLLQEE---------LEALQLQLRALEQETRDGGQEYVVKEVL---RIEPDRAQADEVLQLRE 1015
Cdd:TIGR02169 548 rlnnvvveddavakeaiELLKRRkagratflpLNKMRDERRDLSILSEDGVIGFAVDLVEfdpKYEPAFKYVFGDTLVVE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1016 ELEALRRQKGareaevlllQQRVAALAE---EKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDhqrqdqlREKQEEELS 1092
Cdd:TIGR02169 628 DIEAARRLMG---------KYRMVTLEGelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRER-------LEGLKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1093 FLQDKLKRLEKEramaegkitVKEVLKVEKDAatEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKvVVQE 1172
Cdd:TIGR02169 692 SLQSELRRIENR---------LDELSQELSDA--SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN-VKSE 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1173 KVREIVRPDPKaESEVANLRLELVEQERKYrgAEEQLRSYQSELEALRRRgpQVEVKEVTKEVIKYKTDPEMEKELqrLR 1252
Cdd:TIGR02169 760 LKELEARIEEL-EEDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEE--VSRIEARLREIEQKLNRLTLEKEY--LE 832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1253 EEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEvvqEILQFQEDpQTKEEVASLRAKLSEEQKKQVDLERERASQ 1332
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL---EELEAALR-DLESRLGDLKKERDELEAQLRELERKIEEL 908
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1519473553 1333 EEQIARKEEELSRVKER--VVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRL 1392
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKleALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
215-389 |
1.62e-07 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 53.99 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 215 LQDYMQRCTNELYWLDQQAKGRMQYDWSDRNLDYPSRRRQYENFiNRNLEAKEERINKLHSEGDQLLAAEHPGRNSIEAH 294
Cdd:cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEAL-EAELAAHEERVEALNELGEQLIEEGHPDAEEIQER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 295 MEAVHADWKEYLNLLICEESHLKYMEDYHQFHEDVKDAQELLRKVDSDLNQKYGPdfKDRYQIELLLRELDDQEKVLDKY 374
Cdd:cd00176 81 LEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLG--KDLESVEELLKKHKELEEELEAH 158
|
170
....*....|....*
gi 1519473553 375 EDVVQGLQKRGQQVV 389
Cdd:cd00176 159 EPRLKSLNELAEELL 173
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1080-1652 |
1.84e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1080 QDQLREKQEE------ELSFLQDKLKRLEKERAMAEgkitvKEVLKVEKdaaTEREVSDLTRQYEDEAAKARASQREKTE 1153
Cdd:PRK03918 192 EELIKEKEKEleevlrEINEISSELPELREELEKLE-----KEVKELEE---LKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1154 LLRKIWALEEENAKVvvQEKVREIVRPDPKAEsEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVTK 1233
Cdd:PRK03918 264 LEERIEELKKEIEEL--EEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1234 EVIKyktdpEMEKELQRLREEIVDKTRLIErcdlEIYQLKKEIQALKDTKPQVQTKEVVQEIlqfqedpqtkEEVASLRA 1313
Cdd:PRK03918 341 EELK-----KKLKELEKRLEELEERHELYE----EAKAKKEELERLKKRLTGLTPEKLEKEL----------EELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1314 KLSEEQKKqvdLERERASQEEQIARKEEELSRVKERVVQQEVVRY----EEEPGLRAEASAFAESIDVELRQIDKLRAEL 1389
Cdd:PRK03918 402 EIEEEISK---ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRelteEHRKELLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1390 RRLQRRrtelerqleelereRQARREAEREVQRLQQrlaaleqEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEe 1469
Cdd:PRK03918 479 RKELRE--------------LEKVLKKESELIKLKE-------LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK- 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1470 qhrrqlLEGELETLRRKLAALEKAEVKEKVVLSEsvqveKGDTEQEIQRLKSSLEEES-RSKRELDVEVSRLEARLSE-L 1547
Cdd:PRK03918 537 ------LKGEIKSLKKELEKLEELKKKLAELEKK-----LDELEEELAELLKELEELGfESVEELEERLKELEPFYNEyL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1548 EFHNSKSS-----KELDFLREENHKLQLERQNLQLETRRLQSEINMAATETRDLRNMTVADSGTNHDSRLWSLERELDDL 1622
Cdd:PRK03918 606 ELKDAEKElereeKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEEL 685
|
570 580 590
....*....|....*....|....*....|
gi 1519473553 1623 KRLSKDKDLEIDELQKRLGSVAVKREQREN 1652
Cdd:PRK03918 686 EKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1078-1569 |
2.26e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1078 QRQDQLREKQEEELsflQDKLKRLEKERAMAEGKItvkEVLKVEKDAATEREvsdltrqyeDEAAKARASQREKTEllrK 1157
Cdd:PRK02224 191 QLKAQIEEKEEKDL---HERLNGLESELAELDEEI---ERYEEQREQARETR---------DEADEVLEEHEERRE---E 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1158 IWALEEENAKVvvQEKVREIVRPDPKAESEVANLR--LELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVTKEV 1235
Cdd:PRK02224 253 LETLEAEIEDL--RETIAETEREREELAEEVRDLRerLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1236 IKYKTDPEM-EKELQRLREEIVDKTRLIERCDLEIYQLKKEIQalkDTKPQVQTKEVVQEILQfQEDPQTKEEVASLRAK 1314
Cdd:PRK02224 331 EECRVAAQAhNEEAESLREDADDLEERAEELREEAAELESELE---EAREAVEDRREEIEELE-EEIEELRERFGDAPVD 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1315 LSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYE---EEPGLRAEASAFAESIDVELRQIDKLRAELRR 1391
Cdd:PRK02224 407 LGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcPECGQPVEGSPHVETIEEDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1392 LQRRRTELERQLEELERERQARREAER---EVQRLQQRLAALEQEEAEAREKVT--HTQKVVLQQDPQQAREHAL-LRLQ 1465
Cdd:PRK02224 487 LEEEVEEVEERLERAEDLVEAEDRIERleeRREDLEELIAERRETIEEKRERAEelRERAAELEAEAEEKREAAAeAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1466 LEEEQHRRQLLEGELETLRRKLAALEKAevkekvvlsESVQVEKGDTEQEIQRL--------------KSSLEEESRSKR 1531
Cdd:PRK02224 567 AEEAREEVAELNSKLAELKERIESLERI---------RTLLAAIADAEDEIERLrekrealaelnderRERLAEKRERKR 637
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1519473553 1532 ELDVEV--SRLE---ARLSELEFHNSKSSKELDFLREENHKLQ 1569
Cdd:PRK02224 638 ELEAEFdeARIEearEDKERAEEYLEQVEEKLDELREERDDLQ 680
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
996-1655 |
2.87e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.75 E-value: 2.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 996 EVLRIEPDRAQADEVLQLREELEALRRQkgarEAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQE 1075
Cdd:pfam02463 161 EAAGSRLKRKKKEALKKLIEETENLAEL----IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1076 dhQRQDQLREKQEEELSFLQDKLKRLEKERAMAEgKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELL 1155
Cdd:pfam02463 237 --ERIDLLQELLRDEQEEIESSKQEIEKEEEKLA-QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1156 RKIWALEEENAKV-VVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVT-- 1232
Cdd:pfam02463 314 EKLKESEKEKKKAeKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKlk 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1233 --KEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEiLQFQEDPQTKEEVAS 1310
Cdd:pfam02463 394 eeELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQE-LKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1311 LRAKLSEEQKKQVDLERERASQEEQIARKE----EELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDV--------- 1377
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKEskarSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVaistavive 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1378 --ELRQIDKLRAELRR--LQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDP 1453
Cdd:pfam02463 553 vsATADEVEERQKLVRalTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1454 QQAREHALLRLQLEEEQHRRQLLEGELETLRRK----------LAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSL 1523
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKaslseltkelLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1524 EEESRSKRELDVEVSRLEARLSELEFHNSKsSKELDFLREENHKLQLERQNLQLETRRLQSEINMAATETRDLRNMTVAD 1603
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLK-QKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1519473553 1604 SgtnhDSRLWSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRENHLR 1655
Cdd:pfam02463 792 K----EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELA 839
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
946-1352 |
4.06e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.34 E-value: 4.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 946 LEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEY-VVKEVLRiepdraQADEVLQLREELEALrrQK 1024
Cdd:COG3096 290 LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLnLVQTALR------QQEKIERYQEDLEEL--TE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1025 GAREAevlllQQRVAALAEEKSRAQEKV--TEKEVVKLQNdpQLeAEYQQ-LQEDHQRQDQLREkqeeelsflqdKLKRL 1101
Cdd:COG3096 362 RLEEQ-----EEVVEEAAEQLAEAEARLeaAEEEVDSLKS--QL-ADYQQaLDVQQTRAIQYQQ-----------AVQAL 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1102 EKERAM-------AEGKITVKEVLKVEKDAATErEVSDLtRQYEDEAAKARASQREKTELLRKIW-ALEEENAKVVVQEK 1173
Cdd:COG3096 423 EKARALcglpdltPENAEDYLAAFRAKEQQATE-EVLEL-EQKLSVADAARRQFEKAYELVCKIAgEVERSQAWQTAREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1174 VREivRPDPKAESE-VANLRLELVEQERKYR---GAEEQLRSYQselealRRRGPQVEVKEVTKEVIKyktdpEMEKELQ 1249
Cdd:COG3096 501 LRR--YRSQQALAQrLQQLRAQLAELEQRLRqqqNAERLLEEFC------QRIGQQLDAAEELEELLA-----ELEAQLE 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1250 RLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQfqedPQTKEEVASLRAkLSEEQKKQVDLERER 1329
Cdd:COG3096 568 ELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLR----EQSGEALADSQE-VTAAMQQLLEREREA 642
|
410 420
....*....|....*....|...
gi 1519473553 1330 ASQEEQIARKEEELSRVKERVVQ 1352
Cdd:COG3096 643 TVERDELAARKQALESQIERLSQ 665
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
895-1395 |
8.00e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 8.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 895 IRKELDEETERRRQLEnEVKSTQEEIwtlrnqgpQESVVRKEVLKKVPDPVleeSFQQLQRTLAEEQHKNQLLQEELEAL 974
Cdd:COG4913 240 AHEALEDAREQIELLE-PIRELAERY--------AAARERLAELEYLRAAL---RLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 975 QLQLRALEQETRDGGQEYvvkEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEksraqEKVTE 1054
Cdd:COG4913 308 EAELERLEARLDALREEL---DELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLP-----LPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1055 KEVVKLQND-----PQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKER-AMAEGKITVKEVLKVEKDAATER 1128
Cdd:COG4913 380 EEFAALRAEaaallEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsNIPARLLALRDALAEALGLDEAE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1129 --------EVSDLTRQYEDEAAKARASQR------EKTE--LLRKIWALEeeNAKVVVQEKVREIVRPDPKAESEVANLR 1192
Cdd:COG4913 460 lpfvgeliEVRPEEERWRGAIERVLGGFAltllvpPEHYaaALRWVNRLH--LRGRLVYERVRTGLPDPERPRLDPDSLA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1193 LELVEQERKYRG----------------AEEQLRSYQ---------SELEALRRRGPQVEVKEV------TKEVIKYKtd 1241
Cdd:COG4913 538 GKLDFKPHPFRAwleaelgrrfdyvcvdSPEELRRHPraitragqvKGNGTRHEKDDRRRIRSRyvlgfdNRAKLAAL-- 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1242 pemEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKD----TKPQVQTKEVVQEILQFQEDPQT-----------KE 1306
Cdd:COG4913 616 ---EAELAELEEELAEAEERLEALEAELDALQERREALQRlaeySWDEIDVASAEREIAELEAELERldassddlaalEE 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1307 EVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVV-----------RYEEEPGLRAEAS---AFA 1372
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLarlelralleeRFAAALGDAVERElreNLE 772
|
570 580
....*....|....*....|...
gi 1519473553 1373 ESIDVELRQIDKLRAELRRLQRR 1395
Cdd:COG4913 773 ERIDALRARLNRAEEELERAMRA 795
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1098-1548 |
8.41e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 8.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1098 LKRLEKERAM---AEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKV 1174
Cdd:COG4717 48 LERLEKEADElfkPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1175 REIVRPDPKAESEVANL--RLE-LVEQERKYRGAEEQLRSYQSELEALRRrgpQVEVKEVTKEVIKYKTDPEMEKELQRL 1251
Cdd:COG4717 128 LPLYQELEALEAELAELpeRLEeLEERLEELRELEEELEELEAELAELQE---ELEELLEQLSLATEEELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1252 REEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQF--------------QEDPQTKEEVA-------S 1310
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallallglgGSLLSLILTIAgvlflvlG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1311 LRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELR 1390
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1391 RLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREhallrlQLEEEQ 1470
Cdd:COG4717 365 LEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEE------ELEELE 438
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1519473553 1471 HRRQLLEGELETLRRKLAALEkAEVKEkvvLSESVQVEkgDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELE 1548
Cdd:COG4717 439 EELEELEEELEELREELAELE-AELEQ---LEEDGELA--ELLQELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1243-1656 |
1.00e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1243 EMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKpqvQTKEVVQEILQFQEDPQTKEEVASLRAklSEEQKKQ 1322
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER---EKAERYQALLKEKREYEGYELLKEKEA--LERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1323 VdlERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLRAEASAfaESIDVElRQIDKLRAELRRLQRrrtelerq 1402
Cdd:TIGR02169 242 I--ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE--EQLRVK-EKIGELEAEIASLER-------- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1403 leelererqARREAEREVQRLQQRlaaleqeeaearekvthtqkvvlqqdpqqarehallRLQLEEEQHRrqlLEGELET 1482
Cdd:TIGR02169 309 ---------SIAEKERELEDAEER------------------------------------LAKLEAEIDK---LLAEIEE 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1483 LRRKLaalekaevkekvvlsesvqvekgdteQEIQRLKSSLEEESRSKREldvEVSRLEARLSELEFHNSKSSKELDFLR 1562
Cdd:TIGR02169 341 LEREI--------------------------EEERKRRDKLTEEYAELKE---ELEDLRAELEEVDKEFAETRDELKDYR 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1563 EENHKLQLERQNLQLETRRLQSEINMAATETRDLRNmtvadsgtnhdsRLWSLERELDDLKRLSKDKDLEIDELQKRLGS 1642
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNA------------AIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
410
....*....|....
gi 1519473553 1643 VAVKREQRENHLRR 1656
Cdd:TIGR02169 460 LAADLSKYEQELYD 473
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
948-1375 |
2.59e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 948 ESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEyvVKEVLRIEPDRAQADEVLQLREELEALRRQKGAR 1027
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREE--LEKLEKLLQLLPLYQELEALEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1028 EAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAM 1107
Cdd:COG4717 152 EERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1108 AEGKITVKEVLKVEKDA-------------------------------ATEREVSDLTRQYEDEAAKARASQREKTELLR 1156
Cdd:COG4717 232 LENELEAAALEERLKEArlllliaaallallglggsllsliltiagvlFLVLGLLALLFLLLAREKASLGKEAEELQALP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1157 KIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRlELVEQERKYRGAEEQLR--SYQSELEALRRRGPQVEVKEVTKE 1234
Cdd:COG4717 312 ALEELEEEELEELLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQleELEQEIAALLAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1235 VIKYKTDPEMEKELQRLREEI--VDKTRLIERCDLEIYQLKKEIQALKDtkpqvQTKEVVQEILQFQedpqtkEEVASLR 1312
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLeeLLGELEELLEALDEEELEEELEELEE-----ELEELEEELEELR------EELAELE 459
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1519473553 1313 AKLS--EEQKKQVDLERERASQEEQIARKEEELSRVK--ERVVQQEVVRYEEE--PGLRAEASAFAESI 1375
Cdd:COG4717 460 AELEqlEEDGELAELLQELEELKAELRELAEEWAALKlaLELLEEAREEYREErlPPVLERASEYFSRL 528
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
954-1350 |
6.12e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.50 E-value: 6.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 954 QRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEY-VVKEVLRiepdraQADEVLQLREELEALRRQKGAREAEVL 1032
Cdd:PRK04863 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLnLVQTALR------QQEKIERYQADLEELEERLEEQNEVVE 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1033 LLQQRVAALAEEKSRAQEkvtekEVVKLQNdpQLeAEYQQ-LQEDHQRQDQLrekqeeelsflQDKLKRLEKERAM---- 1107
Cdd:PRK04863 373 EADEQQEENEARAEAAEE-----EVDELKS--QL-ADYQQaLDVQQTRAIQY-----------QQAVQALERAKQLcglp 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1108 ---AEGKITVKEVLKVEKDAATErEVSDLTRQYEDeaAKARASQREKT-ELLRKIWA-LEEENAKVVVQEKVREIVRPDP 1182
Cdd:PRK04863 434 dltADNAEDWLEEFQAKEQEATE-ELLSLEQKLSV--AQAAHSQFEQAyQLVRKIAGeVSRSEAWDVARELLRRLREQRH 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1183 KAESEVAnLRLELVEQERKYRGaeeqlrsyQSELEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEI--VDKTR 1260
Cdd:PRK04863 511 LAEQLQQ-LRMRLSELEQRLRQ--------QQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVseARERR 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1261 LIERCDLEiyQLKKEIQALKDTKPQVQ---------------TKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDL 1325
Cdd:PRK04863 582 MALRQQLE--QLQARIQRLAARAPAWLaaqdalarlreqsgeEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDE 659
|
410 420
....*....|....*....|....*
gi 1519473553 1326 ERERASQEEqiARKEEELSRVKERV 1350
Cdd:PRK04863 660 EIERLSQPG--GSEDPRLNALAERF 682
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1128-1651 |
6.68e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 6.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1128 REVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQ-EKVREIVRPDPKAESEVANLRLELVEQERKYRGAE 1206
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREElEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1207 EQLRSYQSELEALRRRgpQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQAlkdtkpqv 1286
Cdd:PRK03918 259 EKIRELEERIEELKKE--IEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE-------- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1287 qtkevvqeilQFQEDPQTKEEVASLRAKLSEEQKKQVDLErERASQEEQIARKEEELSRVKERVVQQEVVRYEEEpglRA 1366
Cdd:PRK03918 329 ----------RIKELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE---LE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1367 EASAFAESIDVELRQIDKLRAELR-RLQRRRTELERQLEELERERQARREAEREvQRLQQRLAALEQEEAEAREKVTHTQ 1445
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKkEIKELKKAIEELKKAKGKCPVCGRELTEE-HRKELLEEYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1446 KvvLQQDPQQAREHALLRLQLEEEQHRRQLLEgELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEE 1525
Cdd:PRK03918 474 K--ERKLRKELRELEKVLKKESELIKLKELAE-QLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1526 ES---RSKRELDVEVSRLEARLSELEfhnsKSSKELDFLREENHKLQLErqnlqletrrlqsEINMAATETRDLRNMtva 1602
Cdd:PRK03918 551 LEelkKKLAELEKKLDELEEELAELL----KELEELGFESVEELEERLK-------------ELEPFYNEYLELKDA--- 610
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1519473553 1603 dsgtnhDSRLWSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRE 1651
Cdd:PRK03918 611 ------EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1002-1424 |
8.11e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 8.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1002 PDRAQADEVLQLREELEALRRQKG---AREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDP--QLEAEYQQLQED 1076
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1077 HQRQDQLREkQEEELSFLQDKLKRLEKERAMAEGKItvkEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLR 1156
Cdd:COG4717 145 PERLEELEE-RLEELRELEEELEELEAELAELQEEL---EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1157 KIWALEEENAKVVVQEKVREIVRP--DPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKE---V 1231
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERlkEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREkasL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1232 TKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLE--------IYQLKKEIQALKDTKPQVQTKEVVQEILQFQEDPQ 1303
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGLPPDLSPEellelldrIEELQELLREAEELEEELQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1304 TKEEvASLRAKLsEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEpgLRAEASAFAESIDVELRQID 1383
Cdd:COG4717 381 VEDE-EELRAAL-EQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE--LEEELEELEEELEELREELA 456
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1519473553 1384 KLRAELRRLQRRRTELERQlEELERERQARREAEREVQRLQ 1424
Cdd:COG4717 457 ELEAELEQLEEDGELAELL-QELEELKAELRELAEEWAALK 496
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1251-1492 |
8.74e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 8.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1251 LREEIVDKTRLIERCDL---EIYQLKKEIQALKDTKPQVQTKEVVQEILQ-FQEDPQTKEEVASLRAKLS--EEQKKQVD 1324
Cdd:COG4913 213 VREYMLEEPDTFEAADAlveHFDDLERAHEALEDAREQIELLEPIRELAErYAAARERLAELEYLRAALRlwFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1325 LERERASQEEQIARKEEELSRVKERVVQQEvvryEEEPGLRAEASafaesiDVELRQIDKLRAELRRLQRRRtelerqle 1404
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALR----EELDELEAQIR------GNGGDRLEQLEREIERLEREL-------- 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1405 elererqarREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLR 1484
Cdd:COG4913 355 ---------EERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
....*...
gi 1519473553 1485 RKLAALEK 1492
Cdd:COG4913 426 AEIASLER 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1005-1222 |
1.02e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1005 AQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKV--TEKEVVKLQNdpQLEAEYQQLQEDHQRQDQ 1082
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQ--ELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1083 LREKQEEelsfLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALE 1162
Cdd:COG4942 95 LRAELEA----QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1163 EENAKVVVQEKvreivrpdpKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRR 1222
Cdd:COG4942 171 AERAELEALLA---------ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
644-1492 |
1.11e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.72 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 644 SSRVLDSKGQELAAMACELQAQKSLLGEVEQNLQAAkqcSSTL-----ASRFQEHcpdLERQEAEVHKLGQRfnnLRQQV 718
Cdd:COG3096 297 ARRQLAEEQYRLVEMARELEELSARESDLEQDYQAA---SDHLnlvqtALRQQEK---IERYQEDLEELTER---LEEQE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 719 ERRAQSLQSAKAAYEHFHRGHDhvlqflvsipsyepqETDSLsqmETKLKNQKNLLDEIASReqevqkicanSQQYQQAV 798
Cdd:COG3096 368 EVVEEAAEQLAEAEARLEAAEE---------------EVDSL---KSQLADYQQALDVQQTR----------AIQYQQAV 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 799 KDYElEAEKLRSL--LDLENGRRSHVSKRARLQSPATKVKEEE------AALAAKFTEVYAINRQ------RLQNLEFAL 864
Cdd:COG3096 420 QALE-KARALCGLpdLTPENAEDYLAAFRAKEQQATEEVLELEqklsvaDAARRQFEKAYELVCKiageveRSQAWQTAR 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 865 NLLRQQPEVEVTHETLQrnrpdsgveeawKIRKELDEETERRRQLENevkstqeeiwtlrnqgpqesvvrkevlkkvpdp 944
Cdd:COG3096 499 ELLRRYRSQQALAQRLQ------------QLRAQLAELEQRLRQQQN--------------------------------- 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 945 vLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDggqeyvvkevlriepDRAQADEVLQLREELEALRRQK 1024
Cdd:COG3096 534 -AERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAE---------------AVEQRSELRQQLEQLRARIKEL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1025 GAREAEVLLLQQRVAALAEEKSRAQE---KVTEKEVVKLQNDPQLEAEYQQLQedhQRQDQLrEKQEEELSF----LQDK 1097
Cdd:COG3096 598 AARAPAWLAAQDALERLREQSGEALAdsqEVTAAMQQLLEREREATVERDELA---ARKQAL-ESQIERLSQpggaEDPR 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1098 LKRLeKERAmaeGKITVKEVLK-VEKDAATERE-----------VSDLtrqyedEAAKARASQREktELLRKIW------ 1159
Cdd:COG3096 674 LLAL-AERL---GGVLLSEIYDdVTLEDAPYFSalygparhaivVPDL------SAVKEQLAGLE--DCPEDLYliegdp 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1160 ---------ALEEENAKVVV--QEKVR-----EIVRPDPKA-ESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRR- 1221
Cdd:COG3096 742 dsfddsvfdAEELEDAVVVKlsDRQWRysrfpEVPLFGRAArEKRLEELRAERDELAEQYAKASFDVQKLQRLHQAFSQf 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1222 RGPQVEVKevtkevikYKTDPEMEkeLQRLREEIVDKTRLIERCDLEIYQLKkeiQALKDTKPQVQTKEVVQEILQFQED 1301
Cdd:COG3096 822 VGGHLAVA--------FAPDPEAE--LAALRQRRSELERELAQHRAQEQQLR---QQLDQLKEQLQLLNKLLPQANLLAD 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1302 PQTKEEVASLRAKLSEEQ----------------KKQVDLERERASQEEQIARKEEELSRVKERVVQQ-----EVVR--- 1357
Cdd:COG3096 889 ETLADRLEELREELDAAQeaqafiqqhgkalaqlEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQifalsEVVQrrp 968
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1358 ---YEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAERE-VQRLQQRLAALEQE 1433
Cdd:COG3096 969 hfsYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQtLQELEQELEELGVQ 1048
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*....
gi 1519473553 1434 EAEAREKVTHTQKVVLQqdpQQAREHALLRLQLEEEqhrRQLLEGELETLRRKLAALEK 1492
Cdd:COG3096 1049 ADAEAEERARIRRDELH---EELSQNRSRRSQLEKQ---LTRCEAEMDSLQKRLRKAER 1101
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
953-1598 |
1.30e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 953 LQRTLAEEQHKNQLLQEELEALqLQLRALEQETRDGGQEYVVKEVLRIEPDRAQADEVLQ-LREELEALRRQKGAREAev 1031
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAM-ADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEdSNTQIEQLRKMMLSHEG-- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1032 lLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLqedhqrqdqLREkQEEELSFLQDKL----KRLEKERAM 1107
Cdd:pfam15921 185 -VLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKI---------LRE-LDTEISYLKGRIfpveDQLEALKSE 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1108 AEGKItvkEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEE--NAKVVVQEKVREIvrpdpkaE 1185
Cdd:pfam15921 254 SQNKI---ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQarNQNSMYMRQLSDL-------E 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1186 SEVANLRLELVEQERKYRGA----EEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRL 1261
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKieelEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRL 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1262 IER---CDLEIYQLKKEiqaLKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKlSEEQKKQVDLERERASQEEQIAR 1338
Cdd:pfam15921 404 WDRdtgNSITIDHLRRE---LDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGK-NESLEKVSSLTAQLESTKEMLRK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1339 KEEELSRVKERVVQQEvvryeeepglraeasafaesidvelRQIDKLRAELRRLQRrrtelerqleelererqARREAER 1418
Cdd:pfam15921 480 VVEELTAKKMTLESSE-------------------------RTVSDLTASLQEKER-----------------AIEATNA 517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1419 EVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPqqarehalLRLQLEEEQHRRQLLEGELETLRRKLAALEKAevkek 1498
Cdd:pfam15921 518 EITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA--------LKLQMAEKDKVIEILRQQIENMTQLVGQHGRT----- 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1499 vvlSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSK----SSKELDFLREenhkLQLERQN 1574
Cdd:pfam15921 585 ---AGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKlvnaGSERLRAVKD----IKQERDQ 657
|
650 660
....*....|....*....|....*...
gi 1519473553 1575 LQLETRRLQSEINMAATE----TRDLRN 1598
Cdd:pfam15921 658 LLNEVKTSRNELNSLSEDyevlKRNFRN 685
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1192-1486 |
2.11e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1192 RLELVEQERKYRGAEEQLRSYQSEL---EALRRRGPQVEvKEVTKEVIKYKTDPEMEKELQRLREEivDKTRLIERCDLE 1268
Cdd:pfam17380 292 KFEKMEQERLRQEKEEKAREVERRRkleEAEKARQAEMD-RQAAIYAEQERMAMERERELERIRQE--ERKRELERIRQE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1269 iyQLKKEIQALKDTK----PQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEqIARKEEELS 1344
Cdd:pfam17380 369 --EIAMEISRMRELErlqmERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQRE-VRRLEEERA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1345 RVKERVVQQEVVRYEEEPGLRA-EASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRL 1423
Cdd:pfam17380 446 REMERVRLEEQERQQQVERLRQqEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEER 525
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1519473553 1424 QQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRK 1486
Cdd:pfam17380 526 QKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
894-1106 |
2.56e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 894 KIRKELDEETERRRQLENEVKSTQEEIWTLRnqgpQESVVRKEVLKKvpdpvLEESFQQLQRTLAEEQHKNQLLQEELEA 973
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALE----RRIAALARRIRA-----LEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 974 LQLQLRALEQETRDGGQEYVVKEVLRIEP--------------DRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVA 1039
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDfldavrrlqylkylAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1519473553 1040 ALAEEKSRAQEKVTEKEvvklqndpQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERA 1106
Cdd:COG4942 182 ELEEERAALEALKAERQ--------KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
643-1492 |
3.03e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.19 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 643 ESSRVLDSKGQELAAMACELQAQKSLLGEVEQNLQAAK---QCSSTlASRFQEHcpdLERQEAEVHKLGQRfnnLRQQVE 719
Cdd:PRK04863 297 TSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASdhlNLVQT-ALRQQEK---IERYQADLEELEER---LEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 720 RRAQSLQSAKAAYEHFHRGHDHVLqflvsipsyepqetdslsQMETKLKNQKNLLDEIASReqevqkicanSQQYQQAVK 799
Cdd:PRK04863 370 VVEEADEQQEENEARAEAAEEEVD------------------ELKSQLADYQQALDVQQTR----------AIQYQQAVQ 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 800 DYElEAEKLRSL--LDLENGRRSHVSKRARLQSPATKVKEeeaaLAAKFTEVYAINRQrlqnLEFALNLLRQ-QPEVEvt 876
Cdd:PRK04863 422 ALE-RAKQLCGLpdLTADNAEDWLEEFQAKEQEATEELLS----LEQKLSVAQAAHSQ----FEQAYQLVRKiAGEVS-- 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 877 hetlqrnrpdsgVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKevlkkvpdpVLEESFQQLQRT 956
Cdd:PRK04863 491 ------------RSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAER---------LLAEFCKRLGKN 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 957 LAEEqhknQLLQEELEALQLQLRALEQETRDggqeyvvkevlriepDRAQADEVLQLREELEALRRQKGAREAEVLLLQQ 1036
Cdd:PRK04863 550 LDDE----DELEQLQEELEARLESLSESVSE---------------ARERRMALRQQLEQLQARIQRLAARAPAWLAAQD 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1037 RVAALAEEKSRAQEkvtekevvklqNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRL--------EKERAMA 1108
Cdd:PRK04863 611 ALARLREQSGEEFE-----------DSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLsqpggsedPRLNALA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1109 E--GKITVKEVLK-VEKDAATERE-----------VSDLTRqyedeAAKARASQREKTELLRKI-----------WALEE 1163
Cdd:PRK04863 680 ErfGGVLLSEIYDdVSLEDAPYFSalygparhaivVPDLSD-----AAEQLAGLEDCPEDLYLIegdpdsfddsvFSVEE 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1164 ENAKVVVQE--------KVREIVRPDPKA-ESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRR---RGPQVEVkev 1231
Cdd:PRK04863 755 LEKAVVVKIadrqwrysRFPEVPLFGRAArEKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRfigSHLAVAF--- 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1232 tkevikyktDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKkeiQALKDTKPQVQTKEVVQEILQFQEDPQTKEEVASL 1311
Cdd:PRK04863 832 ---------EADPEAELRQLNRRRVELERALADHESQEQQQR---SQLEQAKEGLSALNRLLPRLNLLADETLADRVEEI 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1312 RAKLSEEQKKQVDLER--ERASQEEQIARK----EEELSRVKERVVQQEVVR---------------------YEEEPGL 1364
Cdd:PRK04863 900 REQLDEAEEAKRFVQQhgNALAQLEPIVSVlqsdPEQFEQLKQDYQQAQQTQrdakqqafaltevvqrrahfsYEDAAEM 979
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1365 RAEASAFAESIDVELRQI----DKLRAELRRLQRRRTELERQLEELERERQARR----EAEREVQRLQQRLAALEQEEAE 1436
Cdd:PRK04863 980 LAKNSDLNEKLRQRLEQAeqerTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRqmlqELKQELQDLGVPADSGAEERAR 1059
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*.
gi 1519473553 1437 AREKVTHtqkvvlqqdpQQAREHALLRLQLEEEqhrRQLLEGELETLRRKLAALEK 1492
Cdd:PRK04863 1060 ARRDELH----------ARLSANRSRRNQLEKQ---LTFCEAEMDNLTKKLRKLER 1102
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1089-1638 |
3.47e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1089 EELSFLQDKLKRLEKERAMAEGKIT--VKEVLKVEKdaaterEVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENA 1166
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDkfLTEIKKKEK------ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1167 KVVVQEKVREIVRPDPKAESEVAN-LRLELVEQERKYRGAEEQLRSYQSELEALrrrgpQVEVKEVTKEVIKYKTD-PEM 1244
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKNKsLESQISELKKQNNQLKDNIEKKQQEINEK-----TTEISNTQTQLNQLKDEqNKI 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1245 EKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQFQED--------PQTKEEVASLRAKLS 1316
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKleeiqnqiSQNNKIISQLNEQIS 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1317 EEQKKQVDLERERASQEEQIARKEEELSRVKErvvqqevvryeeepglraEASAFAESIDVELRQIDKLRaelRRLQRRR 1396
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKLKK------------------ENQSYKQEIKNLESQINDLE---SKIQNQE 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1397 TELERQLEELERERQARREAEREVQRLQQrlaaleqeeaeAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLL 1476
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKE-----------TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVL 473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1477 EGELETLRRKLAALEKaEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELE-------- 1548
Cdd:TIGR04523 474 SRSINKIKQNLEQKQK-ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEdelnkddf 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1549 -FHNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEINMAATETRDLRNMTvadsgTNHDSRLWSLERELDDLKRLSK 1627
Cdd:TIGR04523 553 eLKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI-----EEKEKKISSLEKELEKAKKENE 627
|
570
....*....|.
gi 1519473553 1628 DKDLEIDELQK 1638
Cdd:TIGR04523 628 KLSSIIKNIKS 638
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
789-1546 |
3.67e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.56 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 789 ANSQQYQQAVKDYELEAEKLRSLL------DLENGRRSHVSKRARLQSPATKVKEEEAALAAKftevyainRQRLQNLEF 862
Cdd:pfam05483 56 SGDCHYQEGLKDSDFENSEGLSRLysklykEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQ--------RKAIQELQF 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 863 ALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVP 942
Cdd:pfam05483 128 ENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAE 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 943 DPVLEESFQqLQRTLAEEQHKNQLLQEELEALQLQ-----------------LRALEQETRDGGQEYVVKEVLRIEPDRA 1005
Cdd:pfam05483 208 NARLEMHFK-LKEDHEKIQHLEEEYKKEINDKEKQvsllliqitekenkmkdLTFLLEESRDKANQLEEKTKLQDENLKE 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1006 QADEVLQLREELEALR-------RQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQ 1078
Cdd:pfam05483 287 LIEKKDHLTKELEDIKmslqrsmSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1079 RQDQLREKQEEELSF----LQDKLKRLEKERAMAEGKITVKEVLKveKDAATEREVSDLTRQYEDEAAKARASQREKTEL 1154
Cdd:pfam05483 367 TEQQRLEKNEDQLKIitmeLQKKSSELEEMTKFKNNKEVELEELK--KILAEDEKLLDEKKQFEKIAEELKGKEQELIFL 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1155 LRkiwALEEENAKVVVQekVREIVRPDPKAESEVANLRLELVEQERKyrgaEEQLRSYQSELealrrrgpQVEVKEVTKE 1234
Cdd:pfam05483 445 LQ---AREKEIHDLEIQ--LTAIKTSEEHYLKEVEDLKTELEKEKLK----NIELTAHCDKL--------LLENKELTQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1235 VikyktdPEMEKELQRLREEIVDKTRLIERcdleiyqLKKEIQALKDTKPQVQTK-EVVQEILQFQEDpqtkeevaSLRA 1313
Cdd:pfam05483 508 A------SDMTLELKKHQEDIINCKKQEER-------MLKQIENLEEKEMNLRDElESVREEFIQKGD--------EVKC 566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1314 KLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYE---EEPGLRAEASAFAESIDVELRQIDKLRAELR 1390
Cdd:pfam05483 567 KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEElhqENKALKKKGSAENKQLNAYEIKVNKLELELA 646
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1391 RLQRRrtelerqleelERERQARREAEREVQRLQQrlaaLEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQ 1470
Cdd:pfam05483 647 SAKQK-----------FEEIIDNYQKEIEDKKISE----EKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEK 711
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1519473553 1471 HRRQLleGELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSE 1546
Cdd:pfam05483 712 HKHQY--DKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1297-1532 |
3.98e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1297 QFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEvvryEEEPGLRAEASAFAESID 1376
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE----QELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1377 VELRQIDKLRAELRRLQRrrtELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQA 1456
Cdd:COG4942 94 ELRAELEAQKEELAELLR---ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1519473553 1457 REHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSesvqvEKGDTEQEIQRLKSSLEEESRSKRE 1532
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA-----ELQQEAEELEALIARLEAEAAAAAE 241
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
706-1485 |
4.03e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 706 KLGQRFNNLRQQVERRAQSLQSAKAAYEHFHRGHDHVLQFLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIA------- 778
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEhnlskim 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 779 ----------SREQEVQKIcaNSQQYQQAVKDYELEAEKLRSLLDLENGR-RSHVSKRARLQSPATKVKEEEAALAAKFT 847
Cdd:TIGR00606 266 kldneikalkSRKKQMEKD--NSELELKMEKVFQGTDEQLNDLYHNHQRTvREKERELVDCQRELEKLNKERRLLNQEKT 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 848 EV------YAINRQRLQNLEFALNLLRQQPEVEVTHETLQRNrPDSGVEEAWKIRKELDEETERRRQLENEVKSTQEEIW 921
Cdd:TIGR00606 344 ELlveqgrLQLQADRHQEHIRARDSLIQSLATRLELDGFERG-PFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKER 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 922 TlrnqgPQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQ----------EELEALQLQLRALEQETRDGGQE 991
Cdd:TIGR00606 423 L-----KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQqlegssdrilELDQELRKAERELSKAEKNSLTE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 992 YVVKEVLRIEPDRAQADEVL-QLREELEALRRQKGAREAEVLLLQQRVAA---LAEEKSRAQEKVTeKEVVKLQNDPQLE 1067
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLrKLDQEMEQLNHHTTTRTQMEMLTKDKMDKdeqIRKIKSRHSDELT-SLLGYFPNKKQLE 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1068 AEYQQLQED-HQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEvlKVEKDAATEREVSDLTRQYE--DEAAKA 1144
Cdd:TIGR00606 577 DWLHSKSKEiNQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYED--KLFDVCGSQDEESDLERLKEeiEKSSKQ 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1145 RASQREKTELLRK-IWALEEENAKVVvqekvrEIVRPDPKAESEVANLRLELveqERKYRGAEEQLRSYQSELEALRRRG 1223
Cdd:TIGR00606 655 RAMLAGATAVYSQfITQLTDENQSCC------PVCQRVFQTEAELQEFISDL---QSKLRLAPDKLKSTESELKKKEKRR 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1224 PQVEVKEVTKEVI---KYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQV--------QTKEVV 1292
Cdd:TIGR00606 726 DEMLGLAPGRQSIidlKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVtimerfqmELKDVE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1293 QEILQFQEDPQTKE---EVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLrAEAS 1369
Cdd:TIGR00606 806 RKIAQQAAKLQGSDldrTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL-QRRQ 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1370 AFAESIDVELRQIDKLRAELRRL--------QRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKV 1441
Cdd:TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAkeqdspleTFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKI 964
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 1519473553 1442 thtQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRR 1485
Cdd:TIGR00606 965 ---QDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
903-1161 |
5.12e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 5.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 903 TERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALE 982
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA--LERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 983 QETRDGGQEYVvkevlriepDRAQADEVLQLREELEALRRQKGAREAEvlllqqRVAALAEEKSRAQEKVTEKEVVKLQn 1062
Cdd:COG4942 97 AELEAQKEELA---------ELLRALYRLGRQPPLALLLSPEDFLDAV------RRLQYLKYLAPARREQAEELRADLA- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1063 dpQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAA 1142
Cdd:COG4942 161 --ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
250
....*....|....*....
gi 1519473553 1143 KARASQREKTELLRKIWAL 1161
Cdd:COG4942 239 AAERTPAAGFAALKGKLPW 257
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
585-1391 |
5.39e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 5.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 585 LLRTRVEDTNRKYEHLLQLLDLAQEKVDVANRLEKSLQQSWELLATHENHLNQDDTvpESSRVLDSKGQELAAMACELQA 664
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEE--ELKSELLKLERRKVDDEEKLKE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 665 QKSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQEAEVHKLGQRFNNLRQQVERRAQSLQSAKAAYEHFHRGHDHVLQ 744
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 745 FLvSIPSYEPQETDSLSQMETKLKnqKNLLDEIASREQEVQKICANSQQYQQAVKDYELEAEKLRSLLDLENGRRSHVSK 824
Cdd:pfam02463 399 LK-SEEEKEAQLLLELARQLEDLL--KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 825 RARLQSPATKVKEEEAALAAKFTEVYAINRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKELDEETE 904
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 905 RRRQLENEVKSTQEE------IWTLRNQGPQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQL 978
Cdd:pfam02463 556 TADEVEERQKLVRALtelplgARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 979 RALEQETRDGGQEYVVKEVLRIEPDRA-QADEVLQLREELEALRRQKGAREAEVLLLqqRVAALAEEKSRAQEKVTEKEV 1057
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSeVKASLSELTKELLEIQELQEKAESELAKE--EILRRQLEIKKKEQREKEELK 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1058 VKLQNDPQLEAEYQQLQEDHQRQdQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKDAATEREVSDL-TRQ 1136
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINE-ELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVeEEK 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1137 YEDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSEL 1216
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1217 EALRRRGPQVEVKEVTKEVIKYKtdpEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPqvqtkevvqeil 1296
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKEEKE---KEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEP------------ 937
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1297 qfqedpqtkeevaslrAKLSEEQKKQVDLERERASQEEQIA----RKEEELSRVKERVVQQEVVRYEEEPGLRAE-ASAF 1371
Cdd:pfam02463 938 ----------------EELLLEEADEKEKEENNKEEEEERNkrllLAKEELGKVNLMAIEEFEEKEERYNKDELEkERLE 1001
|
810 820
....*....|....*....|
gi 1519473553 1372 AESIDVELRQIDKLRAELRR 1391
Cdd:pfam02463 1002 EEKKKLIRAIIEETCQRLKE 1021
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
897-1624 |
6.79e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 6.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 897 KELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVpDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQL 976
Cdd:TIGR00606 255 KEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGT-DEQLNDLYHNHQRTVREKERELVDCQRELEKLNK 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 977 QLRALEQETrdgGQEYVVKEVLRIEPDRAQAD--------EVLQLREELEALRRQKGAR---EAEVLLLQQRVAALAEEK 1045
Cdd:TIGR00606 334 ERRLLNQEK---TELLVEQGRLQLQADRHQEHirardsliQSLATRLELDGFERGPFSErqiKNFHTLVIERQEDEAKTA 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1046 SRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKeramaegkiTVKEVLKVEKD-A 1124
Cdd:TIGR00606 411 AQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG---------SSDRILELDQElR 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1125 ATEREVSDLTRQYEDEAAKARAS--QREKTELLRKIWALEEENA------------------KVVVQEKVREIVRPDPKA 1184
Cdd:TIGR00606 482 KAERELSKAEKNSLTETLKKEVKslQNEKADLDRKLRKLDQEMEqlnhhtttrtqmemltkdKMDKDEQIRKIKSRHSDE 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1185 ESEVAN-------LRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQV--EVKEVTKEVIKYKTD-------PEMEKEL 1248
Cdd:TIGR00606 562 LTSLLGyfpnkkqLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHInnELESKEEQLSSYEDKlfdvcgsQDEESDL 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1249 QRLREEIVDKTRLIERC-------DLEIYQLKKEIQALKDTKPQV-QTKEVVQEILQFQED-----PQTKEEVASLRAKL 1315
Cdd:TIGR00606 642 ERLKEEIEKSSKQRAMLagatavySQFITQLTDENQSCCPVCQRVfQTEAELQEFISDLQSklrlaPDKLKSTESELKKK 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1316 SEEQKKQVDLERERASQeeqIARKEEELSRVKERVvQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQR- 1394
Cdd:TIGR00606 722 EKRRDEMLGLAPGRQSI---IDLKEKEIPELRNKL-QKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERf 797
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1395 -RRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALL------RLQLE 1467
Cdd:TIGR00606 798 qMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTnelkseKLQIG 877
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1468 EEQHRRQLLEGELETLRRK-----------------LAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSL------- 1523
Cdd:TIGR00606 878 TNLQRRQQFEEQLVELSTEvqslireikdakeqdspLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVknihgym 957
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1524 --------EEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLRE--ENHKLQLERQNLQLETRRLQSEINMAATET 1593
Cdd:TIGR00606 958 kdienkiqDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQdiDTQKIQERWLQDNLTLRKRENELKEVEEEL 1037
|
810 820 830
....*....|....*....|....*....|.
gi 1519473553 1594 RDLRNMTVADSGTNHDSRLWSLERELDDLKR 1624
Cdd:TIGR00606 1038 KQHLKEMGQMQVLQMKQEHQKLEENIDLIKR 1068
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
895-1576 |
8.33e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 8.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 895 IRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDPV--LEESFQQLQR----TLAEEQHKNQLLQ 968
Cdd:pfam12128 274 IASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELeaLEDQHGAFLDadieTAAADQEQLPSWQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 969 EELEALQLQLRALEQETRDGGQEYvvkEVLRIEPDRAQADEVLQLREELEALR----RQKGAREA-----EVLLLQQRVA 1039
Cdd:pfam12128 354 SELENLEERLKALTGKHQDVTAKY---NRRRSKIKEQNNRDIAGIKDKLAKIReardRQLAVAEDdlqalESELREQLEA 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1040 ALAEEKSRAQEKVTEKEVVKLQ-NDPQLEAEyqqLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKitvkevl 1118
Cdd:pfam12128 431 GKLEFNEEEYRLKSRLGELKLRlNQATATPE---LLLQLENFDERIERAREEQEAANAEVERLQSELRQARKR------- 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1119 kveKDAATER----EVSDLTRQYEDEAAKARASQREKT--ELLRKIWALEEEN-AKVVVQEK------VREIVRPDPKAE 1185
Cdd:pfam12128 501 ---RDQASEAlrqaSRRLEERQSALDELELQLFPQAGTllHFLRKEAPDWEQSiGKVISPELlhrtdlDPEVWDGSVGGE 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1186 SEVANLRLELveqerkyrgAEEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPEM---EKELQRLREEIVDKTRLI 1262
Cdd:pfam12128 578 LNLYGVKLDL---------KRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLvqaNGELEKASREETFARTAL 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1263 ERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQFQE-DPQTKEEVASLRAKLSEEQKKQVDLERER-ASQEEQIARKE 1340
Cdd:pfam12128 649 KNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSlEAQLKQLDKKHQAWLEEQKEQKREARTEKqAYWQVVEGALD 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1341 EELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRrtelerqleeLERERQARREAEREV 1420
Cdd:pfam12128 729 AQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERK----------IERIAVRRQEVLRYF 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1421 QRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEK--AEVKEK 1498
Cdd:pfam12128 799 DWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSklATLKED 878
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1499 VVlSESVQVEKGDTEQEIQRLKSSLEEESRS-KRELDVEVSRLEA-RLSELEFHNSKSSKELDFLREENHKLQLERQNLQ 1576
Cdd:pfam12128 879 AN-SEQAQGSIGERLAQLEDLKLKRDYLSESvKKYVEHFKNVIADhSGSGLAETWESLREEDHYQNDKGIRLLDYRKLVP 957
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1414-1640 |
1.00e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1414 REAEREVQRLQQrLAALEQEEAEAREKVTHTQKVVLQQDPQQA-REHALLRLQLEEEQHRRQLLEGELETLRRKLAALEK 1492
Cdd:COG4913 245 EDAREQIELLEP-IRELAERYAAARERLAELEYLRAALRLWFAqRRLELLEAELEELRAELARLEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1493 aevkEKVVLSESVQVEKGDTEQEIQRLKSSLEEEsrsKRELDVEVSRLEARLSELEFHNSKSSKELDFLREEnhkLQLER 1572
Cdd:COG4913 324 ----ELDELEAQIRGNGGDRLEQLEREIERLERE---LEERERRRARLEALLAALGLPLPASAEEFAALRAE---AAALL 393
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1519473553 1573 QNLQLETRRLQSEINMAATETRDLRNmtvadsgtnhdsRLWSLERELDDLKRLSKDKDLEIDELQKRL 1640
Cdd:COG4913 394 EALEEELEALEEALAEAEAALRDLRR------------ELRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1488-1640 |
1.33e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1488 AALEKAEVKEKVVLSESVQVEKGDTEQEIQrlkssleeesrskrELDVEVSRLEARLSELEFHNSKsskeldfLREENHK 1567
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELT--------------EEEEEIRRLEEQVERLEAEVEE-------LEAELEE 438
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1519473553 1568 LQLERQNLQLETRRLQSEINMAATETRDLRNMtvadsgtnhDSRLWSLERELDDLKRlskdkdlEIDELQKRL 1640
Cdd:COG2433 439 KDERIERLERELSEARSEERREIRKDREISRL---------DREIERLERELEEERE-------RIEELKRKL 495
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
945-1114 |
1.62e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 945 VLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVL-RIEPDRAQADE-----------VLQ 1012
Cdd:COG3206 216 LLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRaQLAELEAELAElsarytpnhpdVIA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1013 LREELEALRRQKGAR--------EAEVLLLQQRVAALAEEKSRAQEKVtekevvklQNDPQLEAEYQQLQEDHQRQDQLr 1084
Cdd:COG3206 296 LRAQIAALRAQLQQEaqrilaslEAELEALQAREASLQAQLAQLEARL--------AELPELEAELRRLEREVEVAREL- 366
|
170 180 190
....*....|....*....|....*....|
gi 1519473553 1085 ekqeeeLSFLQDKLKRLEKERAMAEGKITV 1114
Cdd:COG3206 367 ------YESLLQRLEEARLAEALTVGNVRV 390
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1150-1548 |
1.62e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.66 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1150 EKTELLRKIWALEEENAKVVVQEKVReiVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRrgpqvEVK 1229
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVR--YNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQ-----EKE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1230 EVTKEVIKYKTDPEMEK----ELQRLREEIVDKTRLIERCDLEIYQLKKEIQalKDTKPQVQTKEVVQEILQFQEDPqtk 1305
Cdd:pfam17380 307 EKAREVERRRKLEEAEKarqaEMDRQAAIYAEQERMAMERERELERIRQEER--KRELERIRQEEIAMEISRMRELE--- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1306 eevaslRAKLSEEQKKqvdlerERASQEEQIARKEEELSRVKERVVQQEVVRYEEepgLRAEASafaesidvELRQIdkl 1385
Cdd:pfam17380 382 ------RLQMERQQKN------ERVRQELEAARKVKILEEERQRKIQQQKVEMEQ---IRAEQE--------EARQR--- 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1386 raELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALlrlq 1465
Cdd:pfam17380 436 --EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMI---- 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1466 leEEQHRRQLLEGELETLRRKLAALEKAEVKEKvvlSESVQVEKGDTEQEIQRLKSSLEEESR-----SKRELDVEVSRL 1540
Cdd:pfam17380 510 --EEERKRKLLEKEMEERQKAIYEEERRREAEE---ERRKQQEMEERRRIQEQMRKATEERSRleameREREMMRQIVES 584
|
....*...
gi 1519473553 1541 EARLSELE 1548
Cdd:pfam17380 585 EKARAEYE 592
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
868-1577 |
1.70e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 868 RQQPEVEVTHETLQRNRpdsgvEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDpvLE 947
Cdd:pfam01576 2 RQEEEMQAKEEELQKVK-----ERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQE--LE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 948 ESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRdggQEYVVKEVLRIEPDRAQAdEVLQLREELEALRRQKGAR 1027
Cdd:pfam01576 75 EILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLD---EEEAARQKLQLEKVTTEA-KIKKLEEDILLLEDQNSKL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1028 EAEVLLLQQRVAALAEEKSRAQEKVteKEVVKLQNdpqleaeyqqlqedhqrqdqlreKQEEELSFLQDKLKRLEKERAM 1107
Cdd:pfam01576 151 SKERKLLEERISEFTSNLAEEEEKA--KSLSKLKN-----------------------KHEAMISDLEERLKKEEKGRQE 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1108 AEgkitvKEVLKVEKDAATERE-VSDLTRQYEDEAAKARASQREKTELLRKIwaLEEENAKVVVQEKVREivrpdpkAES 1186
Cdd:pfam01576 206 LE-----KAKRKLEGESTDLQEqIAELQAQIAELRAQLAKKEEELQAALARL--EEETAQKNNALKKIRE-------LEA 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1187 EVANLRlELVEQERKYRG-AEEQLRSYQSELEALRRR--------GPQVEVK---EVTKEVIKYKTDPEMEKELQRLREE 1254
Cdd:pfam01576 272 QISELQ-EDLESERAARNkAEKQRRDLGEELEALKTEledtldttAAQQELRskrEQEVTELKKALEEETRSHEAQLQEM 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1255 IVDKTRLIERCDLEIYQLKKEIQALKDTKpQVQTKEVVQEILQFQEDPQTKEEVASLRAK----LSEEQKKQVDLERERA 1330
Cdd:pfam01576 351 RQKHTQALEELTEQLEQAKRNKANLEKAK-QALESENAELQAELRTLQQAKQDSEHKRKKlegqLQELQARLSESERQRA 429
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1331 SQEEQIARKEEELSRVKERVVQQE---VVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTeleRQLEELE 1407
Cdd:pfam01576 430 ELAEKLSKLQSELESVSSLLNEAEgknIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERN---SLQEQLE 506
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1408 RERQARREAEREVQRLQQRLAALEQEEaearEKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELETLRRKL 1487
Cdd:pfam01576 507 EEEEAKRNVERQLSTLQAQLSDMKKKL----EEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQEL 582
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1488 AALEKAEVKEKVVLSesvqvekgDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREenHK 1567
Cdd:pfam01576 583 DDLLVDLDHQRQLVS--------NLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALE--AK 652
|
730
....*....|
gi 1519473553 1568 LQLERQNLQL 1577
Cdd:pfam01576 653 EELERTNKQL 662
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
854-1171 |
1.77e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 854 RQRLQNLEFALNLLRQQpevevthetlqRNRPDSGVEEAwkiRKELDEETERRRQLENEVKSTQEEIWTLRNQgpQESVV 933
Cdd:TIGR02169 680 RERLEGLKRELSSLQSE-----------LRRIENRLDEL---SQELSDASRKIGEIEKEIEQLEQEEEKLKER--LEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 934 RKEVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVLRIE------------ 1001
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEarlreieqklnr 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1002 --PDRAQADEVLQ-LREELEALRRQKGAREAEVLLLQQRVAALAEE--KSRAQEKVTEKEVVKLQND-PQLEAEYQQLQE 1075
Cdd:TIGR02169 824 ltLEKEYLEKEIQeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEEleELEAALRDLESRLGDLKKErDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1076 DHQRQDQLREKQEEELSFLQDKLKRLEK-----ERAMAEGKITVKEVLKVEKDAAT----EREVSDL-------TRQYED 1139
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEelseiEDPKGEDEEIPEEELSLEDVQAElqrvEEEIRALepvnmlaIQEYEE 983
|
330 340 350
....*....|....*....|....*....|....*....
gi 1519473553 1140 EAA-------KARASQREKTELLRKIWALEEENAKVVVQ 1171
Cdd:TIGR02169 984 VLKrldelkeKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1197-1652 |
2.57e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1197 EQERKYRGAEEQLRSYQSELEALRRrgpqvEVKEVTKEVIKYKtdpEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEI 1276
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEE-----ELKEAEEKEEEYA---ELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1277 QALKDTKPQVQTKEVVQEIlqfqedPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVV 1356
Cdd:COG4717 126 QLLPLYQELEALEAELAEL------PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1357 RYEEepgLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQqrlaalEQEEAE 1436
Cdd:COG4717 200 ELEE---LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGL------GGSLLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1437 AREKVTHTQKVVLQqdpqqAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSESVQVEK-GDTEQE 1515
Cdd:COG4717 271 LILTIAGVLFLVLG-----LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEElLELLDR 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1516 IQRLKSSLEEESRSKRELDVEvsRLEARLSELeFHNSKSSKELDFlrEENHKLQLERQNLQLETRRLQSEINMAATETRD 1595
Cdd:COG4717 346 IEELQELLREAEELEEELQLE--ELEQEIAAL-LAEAGVEDEEEL--RAALEQAEEYQELKEELEELEEQLEELLGELEE 420
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1519473553 1596 LRNMTVADSgtnhdsrlwsLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQREN 1652
Cdd:COG4717 421 LLEALDEEE----------LEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
643-1145 |
2.73e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 643 ESSRVLDSKGQELAAmacELQAQKSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQEAEV-------HKLGQR----- 710
Cdd:pfam15921 335 EAKRMYEDKIEELEK---QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELslekeqnKRLWDRdtgns 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 711 --FNNLRQQVERRAQSLQSAKAAYEHFHRGHDHVLQFLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIA---------- 778
Cdd:pfam15921 412 itIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVeeltakkmtl 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 779 -SREQEVQKICANSQQYQQAVKDYELEAEKLRSLLDLENGRRSHVSKRA-RLQSPATKVKEEEAALAAKfTEVYAINRQR 856
Cdd:pfam15921 492 eSSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGdHLRNVQTECEALKLQMAEK-DKVIEILRQQ 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 857 LQNL-EFALNLLRQQPEVEVTHETLQRNRPDSGVE-EAWKIRKelDEETERRRQLENEVKSTQEEIWTLRNQGpqesvvr 934
Cdd:pfam15921 571 IENMtQLVGQHGRTAGAMQVEKAQLEKEINDRRLElQEFKILK--DKKDAKIRELEARVSDLELEKVKLVNAG------- 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 935 KEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRdggqeyVVKEVLRIEPDRAQAdEVLQLR 1014
Cdd:pfam15921 642 SERLRAVKD--IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEME------TTTNKLKMQLKSAQS-ELEQTR 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1015 EELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQ---LEAEYQQLQEDHQRQDQLREKQEEEL 1091
Cdd:pfam15921 713 NTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEkhfLKEEKNKLSQELSTVATEKNKMAGEL 792
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1519473553 1092 SFLQDKLKRLEKERAMAEgkitvkevLKVEKDAATEREVSDLTRQYEDEAAKAR 1145
Cdd:pfam15921 793 EVLRSQERRLKEKVANME--------VALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1378-1655 |
2.94e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1378 ELRQIDkLRAELRRLQRRRTELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAR 1457
Cdd:TIGR02168 221 ELRELE-LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1458 -EHALLRLQLEEEQHRRQL--LEGELETLRRKL--AALEKAEVKEKvvlSESVQVEKGDTEQEIQRLKSSLEEESRSKRE 1532
Cdd:TIGR02168 300 lEQQKQILRERLANLERQLeeLEAQLEELESKLdeLAEELAELEEK---LEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1533 LDVEVSRLEARLSELEfhnsksskeldflreenhkLQLERQNLQLEtrRLQSEINMAATETRDLRNMTVADSGTNHDSRL 1612
Cdd:TIGR02168 377 LEEQLETLRSKVAQLE-------------------LQIASLNNEIE--RLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1519473553 1613 WSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRENHLR 1655
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD 478
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
586-1158 |
3.30e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 586 LRTRVEDTNRKYEHLLQLLDLAQEKVDVANRLEKSLQQSWELLATHENHLNQDDTVPESSRVLDSKGQELAAMACELQAQ 665
Cdd:TIGR00618 231 LREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQ 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 666 ksllgEVEQNLQAAKqcsSTLASRFQeHCPDLERQEAEVHKLGQRFNNLRQQVERRAQSLQSAKAAYEHFHRGH------ 739
Cdd:TIGR00618 311 -----RIHTELQSKM---RSRAKLLM-KRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHtltqhi 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 740 -------DHVLQFLVSIPSYEPQETDSLSQMETKLKNQKNL-LDEIASREQEVQKICANSQQYQQAVKDYELEAEKLRSL 811
Cdd:TIGR00618 382 htlqqqkTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLqGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 812 LDLENGRRSHVSKRARLQSPATKVKEEEaALAAKFTEVYAINRQRLQNLEFALNLLRQQP-EVEVTHETLQR--NRPDSG 888
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKK-AVVLARLLELQEEPCPLCGSCIHPNPARQDIdNPGPLTRRMQRgeQTYAQL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 889 VEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLrnqgPQESVVRKEVLKKVPDPVlEESFQQLQRTLAEEQHKNQLLQ 968
Cdd:TIGR00618 541 ETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL----TQCDNRSKEDIPNLQNIT-VRLQDLTEKLSEAEDMLACEQH 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 969 EELEALQLQLRALEQETRDGGQEyvvKEVLRIEPDRAQADEVLQLREELEALRRqkgAREAEVLLLQQRVAALAEEKSRA 1048
Cdd:TIGR00618 616 ALLRKLQPEQDLQDVRLHLQQCS---QELALKLTALHALQLTLTQERVREHALS---IRVLPKELLASRQLALQKMQSEK 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1049 QEKVTEKEVVK---------LQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLK 1119
Cdd:TIGR00618 690 EQLTYWKEMLAqcqtllrelETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEE 769
|
570 580 590
....*....|....*....|....*....|....*....
gi 1519473553 1120 VEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKI 1158
Cdd:TIGR00618 770 VTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEI 808
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1062-1494 |
3.37e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1062 NDPQLEAEYQQLQEDHQRQDQLREKQEEeLSFLQDKLKRLEKERAMAEGKITVKEVLK-----VEKDAATEREVSDLTRQ 1136
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLqllplYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1137 YEdeaaKARASQREKTELLRKIWALEEENAKVVvQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSEL 1216
Cdd:COG4717 148 LE----ELEERLEELRELEEELEELEAELAELQ-EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1217 EALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEIL 1296
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1297 QFQEDPQ-------TKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEPGLRAEAS 1369
Cdd:COG4717 303 EAEELQAlpaleelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1370 AFAE--SIDVELRQIDKLRAELRRLQRRRTELERQLEELERERQaRREAEREVQRLQQRLAALEQEEAEAREKVTHTQkv 1447
Cdd:COG4717 383 DEEElrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELEEELEELEEELEELREELAELE-- 459
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1519473553 1448 vlqqdpqQAREHALLRLQLEEEQHRRQLLEGELETLRRKLAALEKAE 1494
Cdd:COG4717 460 -------AELEQLEEDGELAELLQELEELKAELRELAEEWAALKLAL 499
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
889-1361 |
3.51e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 889 VEEAWKIRKELDEETERRRQlenEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDpvLEESFQQLQRTLAEEQHKNQLLQ 968
Cdd:PRK02224 267 IAETEREREELAEEVRDLRE---RLEELEEERDDLLAEAGLDDADAEAVEARREE--LEDRDEELRDRLEECRVAAQAHN 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 969 EELEALQLQLRALEQETRDGGQEYVVKEVlRIEPDRAQADE----VLQLREELEALRRQKGAREAEVLLLQQRVAALAEE 1044
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELES-ELEEAREAVEDrreeIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1045 KSRAQEKVTEKEvVKLQNDPQLEAEYQQLQ------------EDHQRQDQLREKqEEELSFLQDKLKRLEKERAMAEGKI 1112
Cdd:PRK02224 421 RDELREREAELE-ATLRTARERVEEAEALLeagkcpecgqpvEGSPHVETIEED-RERVEELEAELEDLEEEVEEVEERL 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1113 T-VKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKiwALEEENAKVVVQEKVREivrpdpKAESEVANL 1191
Cdd:PRK02224 499 ErAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE--RAAELEAEAEEKREAAA------EAEEEAEEA 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1192 RLELVEQERKyrgaeeqLRSYQSELEALRRRGPQVEVKEvtkevikyktdpEMEKELQRLREEIVDKTRLIErcdleiyQ 1271
Cdd:PRK02224 571 REEVAELNSK-------LAELKERIESLERIRTLLAAIA------------DAEDEIERLREKREALAELND-------E 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1272 LKKEIQALKDTKPQVQTKEVVQEILQFQEDPQTKEE-VASLRAKLSEEQKKQVDLERERASQEEQIARKE---EELSRVK 1347
Cdd:PRK02224 625 RRERLAEKRERKRELEAEFDEARIEEAREDKERAEEyLEQVEEKLDELREERDDLQAEIGAVENELEELEelrERREALE 704
|
490
....*....|....
gi 1519473553 1348 ERVVQQEVVRYEEE 1361
Cdd:PRK02224 705 NRVEALEALYDEAE 718
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
951-1158 |
3.69e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 951 QQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYVVKEVlriepdraqADEVLQLREELEALRRQKGAREAE 1030
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDL---------SEEAKLLLQQLSELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1031 VLLLQQRVAALaeeksRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREK---QEEELSFLQDKLKRLEKERAM 1107
Cdd:COG3206 235 LAEAEARLAAL-----RAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1519473553 1108 AEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKI 1158
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
894-1349 |
3.79e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 894 KIRKELDEETERRRQLENEVKSTQEEIwtlrnqgpqesvvrKEVlKKVPDPVLEEsFQQLQRTLAEEQHKNQLLQEELEA 973
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQK--------------KEN-KKNIDKFLTE-IKKKEKELEKLNNKYNDLKKQKEE 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 974 LQLQLRALEQETRDggqeyVVKEVLRIEPDRAQADEVL-----------QLREELEALRRQKGAREAEVLLLQQRVAALA 1042
Cdd:TIGR04523 171 LENELNLLEKEKLN-----IQKNIDKIKNKLLKLELLLsnlkkkiqknkSLESQISELKKQNNQLKDNIEKKQQEINEKT 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1043 EEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQL---------------REKQEEELSFLQDKLKRLEKERAM 1107
Cdd:TIGR04523 246 TEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELekqlnqlkseisdlnNQKEQDWNKELKSELKNQEKKLEE 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1108 AEGKITVKEvlkvEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENakvvvQEKVREIvrpdPKAESE 1187
Cdd:TIGR04523 326 IQNQISQNN----KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN-----QSYKQEI----KNLESQ 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1188 VANLRLELVEQERKYRGAEEQLRSYQSELEALRRrgpqvEVKEVTKEVIKYKtdpemeKELQRLREEIVDKTRLIERCDL 1267
Cdd:TIGR04523 393 INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK-----EIERLKETIIKNN------SEIKDLTNQDSVKELIIKNLDN 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1268 EIYQLKKEIQALKDT---------KPQVQTKEVVQEILQF-QEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIA 1337
Cdd:TIGR04523 462 TRESLETQLKVLSRSinkikqnleQKQKELKSKEKELKKLnEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIS 541
|
490
....*....|..
gi 1519473553 1338 RKEEELSRVKER 1349
Cdd:TIGR04523 542 DLEDELNKDDFE 553
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
899-1656 |
7.79e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 7.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 899 LDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEV----------LKKVPDPV----------------LEESFQQ 952
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLqlekvtteakIKKLEEDIllledqnsklskerklLEERISE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 953 LQRTLAEEQHKNQLLQEELEALQLQLRALEQETR--DGGQEYVVKEVLRIEPDRAQA-DEVLQLREELEALRRQKGAREA 1029
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKkeEKGRQELEKAKRKLEGESTDLqEQIAELQAQIAELRAQLAKKEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1030 EVLLLQQRVAALAEEKSRAQEKVTEkevvklqndpqLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAE 1109
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRE-----------LEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTL 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1110 GKITVKEVLKVEKdaatEREVSDLTRQYEDEAAKARA----------------------SQREKTELLRKIWALEEENAK 1167
Cdd:pfam01576 313 DTTAAQQELRSKR----EQEVTELKKALEEETRSHEAqlqemrqkhtqaleelteqleqAKRNKANLEKAKQALESENAE 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1168 VVVQEKVREIVRPD-----PKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVK--EVTKEVIKYKT 1240
Cdd:pfam01576 389 LQAELRTLQQAKQDsehkrKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKniKLSKDVSSLES 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1241 DPEMEKEL------------QRLREEIVDKTRLIErcdleiyQLKKEIQALKDTKPQVQTKEVvqeilQFQEDPQTKEEV 1308
Cdd:pfam01576 469 QLQDTQELlqeetrqklnlsTRLRQLEDERNSLQE-------QLEEEEEAKRNVERQLSTLQA-----QLSDMKKKLEED 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1309 ASLrAKLSEEQKKQVDLERERASQ-EEQIARKEEELSRVKERVVQ-----------QEVVRYEEEPGLRAEASAFAESID 1376
Cdd:pfam01576 537 AGT-LEALEEGKKRLQRELEALTQqLEEKAAAYDKLEKTKNRLQQelddllvdldhQRQLVSNLEKKQKKFDQMLAEEKA 615
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1377 VELRQIDKLRAELRRLQRRRTELERQLEELERERQARREAEReVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQA 1456
Cdd:pfam01576 616 ISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELER-TNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQV 694
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1457 REhalLRLQLEEEQHRRQLLEGELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVE 1536
Cdd:pfam01576 695 EE---MKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAA 771
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1537 VSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQLE---TRRLQSEINMAATET-RDLRNMtvadsgtnhDSRL 1612
Cdd:pfam01576 772 KKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQREleeARASRDEILAQSKESeKKLKNL---------EAEL 842
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 1519473553 1613 WSLERELDDLKRLSKDKDLEIDELQKRLGSVAVKREQRENHLRR 1656
Cdd:pfam01576 843 LQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRR 886
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
666-1255 |
8.05e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 8.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 666 KSLLGEVEQNLQAAKQCSSTLASRFQEHCPDLERQEAEVHKLGQRFNNLrQQVERRAQSLQSAKAAYEhfhrghdhvlQF 745
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESLEGSKRKLE----------EK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 746 LVSIPSYEPQETDSLSQMETKLKNqknlLDEIASREQEVQKICANSQQYQQAVKDYELEAEKLRSLLdleNGRRSHVSKR 825
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKE----LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI---NGIEERIKEL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 826 ARLQSPATKVKEEEAALAAKFTEVyainRQRLQNLEFALNLLRQQPEVEVTHETLQRNRPDSGVEEAWKIRKELDEE--- 902
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEEL----EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEisk 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 903 -TERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHknqlLQEELEALQLQLRAL 981
Cdd:PRK03918 410 iTARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKE----IEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 982 EQetrdggqeyVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAE--------VLLLQQRVAALAEEKSRAQEKVT 1053
Cdd:PRK03918 486 EK---------VLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekLIKLKGEIKSLKKELEKLEELKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1054 EKEVVKLQNDpQLEAEYQQLqedhqrQDQLREKQEEELSFLQDKLKRLEK-ERAMAEGKITVKEVLKVEKDAATEREVSD 1132
Cdd:PRK03918 557 KLAELEKKLD-ELEEELAEL------LKELEELGFESVEELEERLKELEPfYNEYLELKDAEKELEREEKELKKLEEELD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1133 LTRQYEDEAAKARASQREKTELLRKIWALEE-ENAKVVVQEKVREIVRPDPKAEsEVANLRLELVEQERKYRGAEEQLRS 1211
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRAELE-ELEKRREEIKKTLEKLKEELEEREK 708
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1519473553 1212 YQSELEALRRRGPQVEvkEVTKEVIKYKTDPEME--KELQRLREEI 1255
Cdd:PRK03918 709 AKKELEKLEKALERVE--ELREKVKKYKALLKERalSKVGEIASEI 752
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
951-1360 |
8.63e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 44.07 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 951 QQLQRTLAEEQhkNQLLQEELEALqLQLRALEQETRDGGQEYVVKEVLR---IEPDRAQADEVLQLREELEALRRQkgar 1027
Cdd:PLN03229 372 QQIKIAINENM--DELGKMDTEEL-LKHRMLKFRKIGGFQEGVPVDPERkvnMKKREAVKTPVRELEGEVEKLKEQ---- 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1028 eaevlllqqrVAALAEEKSRAQEKVTEKEVVKLQNDpqLEAEYQQLQEDHQRQDQLREKQEEELS----------FLQDK 1097
Cdd:PLN03229 445 ----------ILKAKESSSKPSELALNEMIEKLKKE--IDLEYTEAVIAMGLQERLENLREEFSKansqdqlmhpVLMEK 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1098 LKRLEKE----RAMAEGKITVKEVLKVEKDAATEREVSDLTRQYED---------EAAKARASQREKTELLRKIWALEE- 1163
Cdd:PLN03229 513 IEKLKDEfnkrLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKlkaeinkkfKEVMDRPEIKEKMEALKAEVASSGa 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1164 ENAKVVVQEKVREIVRPDPKAESEVANLrlelveqerkyrgaeeqLRSYQSELEALRRRgpqvevkevTKEVIKYKTDPE 1243
Cdd:PLN03229 593 SSGDELDDDLKEKVEKMKKEIELELAGV-----------------LKSMGLEVIGVTKK---------NKDTAEQTPPPN 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1244 MEKELQRLREEIVDKT-RLIERCDLE--IYQLKKEIqALKDTKPQVQTKEVVQEILQfqedpQTKEEVASLrAKLSEEQK 1320
Cdd:PLN03229 647 LQEKIESLNEEINKKIeRVIRSSDLKskIELLKLEV-AKASKTPDVTEKEKIEALEQ-----QIKQKIAEA-LNSSELKE 719
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1519473553 1321 KQVDLERERASQEEQiarKEEELSRVKERVVQQEVVRYEE 1360
Cdd:PLN03229 720 KFEELEAELAAARET---AAESNGSLKNDDDKEEDSKEDG 756
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1008-1151 |
9.87e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 9.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1008 DEVLQLREELEALRRQkgaREAEVLLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQ 1087
Cdd:PRK12704 64 EEIHKLRNEFEKELRE---RRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ 140
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1519473553 1088 EEELSflqdKLKRLEKERAmaegkitvKEVL--KVEKDAatEREVSDLTRQYEDEaAKARASQREK 1151
Cdd:PRK12704 141 LQELE----RISGLTAEEA--------KEILleKVEEEA--RHEAAVLIKEIEEE-AKEEADKKAK 191
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1657-1685 |
1.41e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 37.85 E-value: 1.41e-03
10 20
....*....|....*....|....*....
gi 1519473553 1657 SIVVIHPDTGRELSPEEAHRAGLIDWNMF 1685
Cdd:smart00250 10 IGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
714-883 |
1.49e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 714 LRQQVERRAQSLQSAKAAYEHFHRGHDhvlqfLVSIPSYEPQETDSLSQMETKLKNQKNLLDEIASREQEVQKICANSQQ 793
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNG-----LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPD 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 794 YQQAVKDYELEAEKLRSLLDLENGRR--------SH---VSKRARLQSPATKVKEEEAALAAKFTEVYAINRQRLQNLEF 862
Cdd:COG3206 255 ALPELLQSPVIQQLRAQLAELEAELAelsarytpNHpdvIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQA 334
|
170 180
....*....|....*....|....*
gi 1519473553 863 ALNLLRQQ----PEVEVTHETLQRN 883
Cdd:COG3206 335 QLAQLEARlaelPELEAELRRLERE 359
|
|
| DUF445 |
pfam04286 |
Protein of unknown function (DUF445); Predicted to be a membrane protein. |
899-1129 |
1.52e-03 |
|
Protein of unknown function (DUF445); Predicted to be a membrane protein.
Pssm-ID: 427840 [Multi-domain] Cd Length: 368 Bit Score: 43.00 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 899 LDEETERRRQLENEVKSTQEEIwtLRNQGPQESVVRK--EVLKKVPDPVLEESFQQLQRTLAeeqhKNQLlqEELEALQL 976
Cdd:pfam04286 54 LTPEVLARKLREADPAERLGRW--LADPTNAERLAREvaKLLAEILEDLDDERVQRLLKKAL----RRRL--EEIDLAPL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 977 QLRALEQETRDGGQEYVVKEVLRI-------EPDRAQADEVLQLREELEALRRQKGAREAE------VLLLQQRVAALAE 1043
Cdd:pfam04286 126 LGKLLELLLAEGRHQALLDDLLDRlrdwlrsEEGKQRIAEMIDEFLEEWGPLVALLGGIAEmilralSSLLDEVQADPDH 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1044 EKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKD 1123
Cdd:pfam04286 206 PLRLAFDRAVRELITDLLNDPELRAEVEELKQKLLADPAVQDYVKALWESLRSLLLDDLSDPDSALRRRISELLAEFGER 285
|
....*.
gi 1519473553 1124 AATERE 1129
Cdd:pfam04286 286 LAEDPE 291
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1277-1394 |
1.70e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1277 QALKDTKPQVQTKE----VVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARKEEELSRVKERvVQ 1352
Cdd:COG2433 380 EALEELIEKELPEEepeaEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSE-ER 458
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1519473553 1353 QEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQR 1394
Cdd:COG2433 459 REIRKDREISRLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
947-1585 |
1.77e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 947 EESFQQLQRTLAEEQHKNQLLQEELEALQLQLRAlEQETRDGGQEYVVKEVLRiepdraqadevlqlREELEALRRQKGA 1026
Cdd:pfam01576 18 KERQQKAESELKELEKKHQQLCEEKNALQEQLQA-ETELCAEAEEMRARLAAR--------------KQELEEILHELES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1027 REAEVlllQQRVAALAEEKSRAQEKVTEKEvvklQNDPQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERA 1106
Cdd:pfam01576 83 RLEEE---EERSQQLQNEKKKMQQHIQDLE----EQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1107 MAEGKItvkevlkvekdaaterevSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKvvvQEKVR-EIVRPDPKAE 1185
Cdd:pfam01576 156 LLEERI------------------SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKK---EEKGRqELEKAKRKLE 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1186 SEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQvevkEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERC 1265
Cdd:pfam01576 215 GESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEE----ETAQKNNALKKIRELEAQISELQEDLESERAARNKA 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1266 DLEIYQLKKEIQALKDTKPQVQTKEVVQEILQFQEDpqtkEEVASLRAKLSEEQKKQ----VDLERERASQEEQIARKEE 1341
Cdd:pfam01576 291 EKQRRDLGEELEALKTELEDTLDTTAAQQELRSKRE----QEVTELKKALEEETRSHeaqlQEMRQKHTQALEELTEQLE 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1342 ELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERqleelererqARREAEREVQ 1421
Cdd:pfam01576 367 QAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESER----------QRAELAEKLS 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1422 RLQQRLaaleqeeaearEKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQllegeletlrrklaalekAEVKEKVVL 1501
Cdd:pfam01576 437 KLQSEL-----------ESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQ------------------EETRQKLNL 487
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1502 SESVQvekgDTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLREENHKLQ--LERQNLQLET 1579
Cdd:pfam01576 488 STRLR----QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQreLEALTQQLEE 563
|
....*.
gi 1519473553 1580 RRLQSE 1585
Cdd:pfam01576 564 KAAAYD 569
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
894-1325 |
1.78e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 894 KIRKELDEETERRRQLENEVKSTQEEIWTLRNQGPQESVVRKEVLKKVPDP-----VLEESFQQLQRTLAE-----EQHK 963
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkkikELEKQLNQLKSEISDlnnqkEQDW 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 964 NQLLQEELEALQLQLRALEQETRDGGQ---------EYVVKEVLRIEPDRAQADEVLQLRE-ELEALRRQKGAREAEVLL 1033
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKiisqlneqiSQLKKELTNSESENSEKQRELEEKQnEIEKLKKENQSYKQEIKN 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1034 LQQRVAALaEEKSRAQEKVTEKEVVKLQNdpqLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKIT 1113
Cdd:TIGR04523 389 LESQINDL-ESKIQNQEKLNQQKDEQIKK---LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1114 V-KEVLKVEKDA--ATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKvvVQEKVREIVRPDPKAESEVAN 1190
Cdd:TIGR04523 465 SlETQLKVLSRSinKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISS--LKEKIEKLESEKKEKESKISD 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1191 LRLELVE--QERKYRGAEEQLRSYQSELEALRRRGPQVEVK-EVTKEVIKyktdpEMEKELQRLREEIVDKTRLIERCDL 1267
Cdd:TIGR04523 543 LEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSLKKKqEEKQELID-----QKEKEKKDLIKEIEEKEKKISSLEK 617
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1519473553 1268 EIYQLKKEIQALKDTKPQVQT-KEVVQEILQfqedpQTKEEVASLRAKLSEEQKKQVDL 1325
Cdd:TIGR04523 618 ELEKAKKENEKLSSIIKNIKSkKNKLKQEVK-----QIKETIKEIRNKWPEIIKKIKES 671
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1023-1167 |
1.79e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.87 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1023 QKGAREAEVL---LLQQRVAALAEEKSRAQEKVTEKEVVKLQndpqlEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLK 1099
Cdd:PRK09510 71 QKSAKRAEEQrkkKEQQQAEELQQKQAAEQERLKQLEKERLA-----AQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAA 145
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1519473553 1100 RL----EKERAMAEGKITVKEVLKVEKDAATEREVSDLTRQYEDEAA-KARASQREKTELLRKIWALEEENAK 1167
Cdd:PRK09510 146 KAkaeaEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAaKAAAEAKKKAEAEAKKKAAAEAKKK 218
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
1164-1348 |
1.86e-03 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 41.59 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1164 ENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVTKEVIKYKTDPE 1243
Cdd:pfam04012 21 EDPEKMLEQAIRDMQSELVKARQALAQTIARQKQLERRLEQQTEQAKKLEEKAQAALTKGNEELAREALAEKKSLEKQAE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1244 MEKELQRLREEIVDKTRL-IERCDLEIYQLKKEIQALKDTKPQVQTKEVVQEILQFQ---------EDPQTKEEVASLRA 1313
Cdd:pfam04012 101 ALETQLAQQRSAVEQLRKqLAALETKIQQLKAKKNLLKARLKAAKAQEAVQTSLGSLstssatdsfERIEEKIEEREARA 180
|
170 180 190
....*....|....*....|....*....|....*
gi 1519473553 1314 KLSEEQKKQVDLERERASQEEQIARKEEELSRVKE 1348
Cdd:pfam04012 181 DAAAELASAVDLDAKLEQAGIQMEVSEDVLARLKA 215
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1066-1346 |
2.00e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1066 LEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVkevlkvekdAATEREVSDLTRQYEDeaakAR 1145
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDV---------ASAEREIAELEAELER----LD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1146 ASQREKTELLRKIWALEEEnakvvVQEkvreivrpdpkAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQ 1225
Cdd:COG4913 682 ASSDDLAALEEQLEELEAE-----LEE-----------LEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1226 VEVKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQ-----ALKDTKPQVQTKEVVQEILQFQE 1300
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpaETADLDADLESLPEYLALLDRLE 825
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1519473553 1301 D---PQTKEEVASLRAKLSEEQKKQVD--LERERASQEEQIARKEEELSRV 1346
Cdd:COG4913 826 EdglPEYEERFKELLNENSIEFVADLLskLRRAIREIKERIDPLNDSLKRI 876
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1088-1586 |
2.18e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1088 EEELSFLQDKLKRLEKERAMAEGKITVKEvLKVEKDAATEREVSDLTRQYEDEAAKARASQREKTELLRKIWAleeenak 1167
Cdd:TIGR04523 179 EKEKLNIQKNIDKIKNKLLKLELLLSNLK-KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISN------- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1168 vvVQEKVREIVRPDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVEVKEVtKEVIKYKtdpemEKE 1247
Cdd:TIGR04523 251 --TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKEL-KSELKNQ-----EKK 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1248 LQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDT--KPQVQTKEVVQEILQFQEDPQTK-EEVASLRAKLSeeqkkqvD 1324
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESEnsEKQRELEEKQNEIEKLKKENQSYkQEIKNLESQIN-------D 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1325 LERERASQEEQIARKEEELsrvkeRVVQQEVVRYEEE-PGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQL 1403
Cdd:TIGR04523 396 LESKIQNQEKLNQQKDEQI-----KKLQQEKELLEKEiERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1404 EELERE-RQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLlEGELET 1482
Cdd:TIGR04523 471 KVLSRSiNKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL-EDELNK 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1483 LRRKLaaleKAEVKEKVVLSESVQVEKgdTEQEIQRLKSSLEEESRSKRELDVEVSRLEARLSELEFHNSKSSKELDFLR 1562
Cdd:TIGR04523 550 DDFEL----KKENLEKEIDEKNKEIEE--LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
490 500
....*....|....*....|....
gi 1519473553 1563 EENHKLQLERQNLQLETRRLQSEI 1586
Cdd:TIGR04523 624 KENEKLSSIIKNIKSKKNKLKQEV 647
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
946-1395 |
2.35e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 946 LEESFQQLQRTLAEEQHKNQllqeeleALQLQLRALEQetrdggqeyvvKEVLRIEPDRAQADEVLQLREELEALRRQKG 1025
Cdd:pfam05557 32 LEKKASALKRQLDRESDRNQ-------ELQKRIRLLEK-----------REAEAEEALREQAELNRLKKKYLEALNKKLN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1026 AREAEV-------LLLQQRVAALAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQLrEKQEEELSFLQDKL 1098
Cdd:pfam05557 94 EKESQLadareviSCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNL-EKQQSSLAEAEQRI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1099 KRLEKERAMAEGKITVKEVLKVEKDAATEREvsDLTRQYEDEAAKARASQREKtELLRKiwALEEENAKVVVQEKVREiv 1178
Cdd:pfam05557 173 KELEFEIQSQEQDSEIVKNSKSELARIPELE--KELERLREHNKHLNENIENK-LLLKE--EVEDLKRKLEREEKYRE-- 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1179 rpdpkaesEVANLRLELVEQERKYRGAEEQLRSYQSEL---EALRRRGPQVEVKEVTKEVIKY----------KTDPEME 1245
Cdd:pfam05557 246 --------EAATLELEKEKLEQELQSWVKLAQDTGLNLrspEDLSRRIEQLQQREIVLKEENSsltssarqleKARRELE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1246 KELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKdtkpqvQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQV-D 1324
Cdd:pfam05557 318 QELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLT------KERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTqK 391
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1519473553 1325 LERERASQEEQIARKEEELSRVKERVVQQEV----VRYEEEPglrAEASAFAESIDVELRQIDKLRAELRRLQRR 1395
Cdd:pfam05557 392 MQAHNEEMEAQLSVAEEELGGYKQQAQTLERelqaLRQQESL---ADPSYSKEEVDSLRRKLETLELERQRLREQ 463
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
889-1348 |
2.87e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 889 VEEAWKIRKELDEETERRRQLENEVKSTQEEIWTLRNQgpQESVVRKEVlkkvpdPVLEESFQQLQRTLAEEQHKNQLL- 967
Cdd:COG5022 877 VELAERQLQELKIDVKSISSLKLVNLELESEIIELKKS--LSSDLIENL------EFKTELIARLKKLLNNIDLEEGPSi 948
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 968 ----QEELEALQLQLRALEQETRDGGQEYvvkevlriepdraqadevlqlrEELEALRRQKGAREAEVLLLQQRVAALAE 1043
Cdd:COG5022 949 eyvkLPELNKLHEVESKLKETSEEYEDLL----------------------KKSTILVREGNKANSELKNFKKELAELSK 1006
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1044 EKSRAQE-----KVTEKEVVKLQNDPQL-----EAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKR-----LEKERAMA 1108
Cdd:COG5022 1007 QYGALQEstkqlKELPVEVAELQSASKIissesTELSILKPLQKLKGLLLLENNQLQARYKALKLRRensllDDKQLYQL 1086
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1109 EG------KITVKEVLKVEKDAATEREVSDLTRqyeDEAAKARASQREKTELLRKIWALEEENAKVVVQEKVREIVRPDP 1182
Cdd:COG5022 1087 EStenllkTINVKDLEVTNRNLVKPANVLQFIV---AQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEA 1163
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1183 KAESEVANLRLELVEQER---------KYRGAEEQLRSYQSELEALRRRGPQ-VEVKEVTKEVIKYKTDPEMEKElqRLR 1252
Cdd:COG5022 1164 NLEALPSPPPFAALSEKRlyqsalydeKSKLSSSEVNDLKNELIALFSKIFSgWPRGDKLKKLISEGWVPTEYST--SLK 1241
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1253 EEIVDKTRLIERCDLEIYQL---KKEIQALKDTKPQVQTKE--VVQEILQFQEDPQTKEevasLRAKLSEEQKKQVDlER 1327
Cdd:COG5022 1242 GFNNLNKKFDTPASMSNEKLlslLNSIDNLLSSYKLEEEVLpaTINSLLQYINVGLFNA----LRTKASSLRWKSAT-EV 1316
|
490 500
....*....|....*....|.
gi 1519473553 1328 ERASQEEQIARKEEELSRVKE 1348
Cdd:COG5022 1317 NYNSEELDDWCREFEISDVDE 1337
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
1002-1092 |
2.91e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 42.63 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1002 PDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEKVTEkevvklqndpqLEAEYQQLQEDHQRQD 1081
Cdd:PRK11448 143 LLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQE-----------LEAQLEQLQEKAAETS 211
|
90
....*....|.
gi 1519473553 1082 QLREKQEEELS 1092
Cdd:PRK11448 212 QERKQKRKEIT 222
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1320-1657 |
3.52e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1320 KKQVDLERERASQEEQIARKE--EELSRVKERVVQQEVVRYEEEPGLRAEA-SAFAESIDVELRQIDKLRAELRRLQRRR 1396
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEalKKLIEETENLAELIIDLEELKLQELKLKeQAKKALEYYQLKEKLELEEEYLLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1397 TELERQLEELERERQARREAEREVQRLQQRLAALEQEEAEAREKVTHTQKVVLQQDPQQAREHALLRLQLEEEQHRRQLL 1476
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1477 EGELETLRRKLAALEKAEVKEKVVLSESVQVEKgdtEQEIQRLKSSLEEESRSKRELDVEV--SRLEARLSELEFHNSKS 1554
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELK---ELEIKREAEEEEEEELEKLQEKLEQleEELLAKKKLESERLSSA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1555 SKELDFLREENHKLQLERQNLQLETRRLQSEINMAATETRDLRNMTVADSGTnhDSRLWSLERELDDLKRLSKDKDLEID 1634
Cdd:pfam02463 390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIEL--KQGKLTEEKEELEKQELKLLKDELEL 467
|
330 340
....*....|....*....|...
gi 1519473553 1635 ELQKRLGSVAVKREQRENHLRRS 1657
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLL 490
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1243-1592 |
3.68e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1243 EMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKdTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQ 1322
Cdd:pfam07888 49 AQEAANRQREKEKERYKRDREQWERQRRELESRVAELK-EELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAH 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1323 V----DLERERASQEEQIARKEEELSRVKERVVQQEVVRYEEEpGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTE 1398
Cdd:pfam07888 128 EarirELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEE-AERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDT 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1399 LERQ------LEELERERQARREAEREVQR-----LQQRLAALEQEEAEAREKVThtqKVVLQQDPQQAREHAlLRLQLE 1467
Cdd:pfam07888 207 QVLQlqdtitTLTQKLTTAHRKEAENEALLeelrsLQERLNASERKVEGLGEELS---SMAAQRDRTQAELHQ-ARLQAA 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1468 EeqhrrqlLEGELETLRRKLAALEKAEVKEKVVLSESVQVEKGDTE---QEIQRLKSSLEEESRSKRELDVEV------S 1538
Cdd:pfam07888 283 Q-------LTLQLADASLALREGRARWAQERETLQQSAEADKDRIEklsAELQRLEERLQEERMEREKLEVELgrekdcN 355
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1519473553 1539 RLEARLSELEFHNSKSSkeLDFLREENHKLQLERQNLQLETRRLQSEINMAATE 1592
Cdd:pfam07888 356 RVQLSESRRELQELKAS--LRVAQKEKEQLQAEKQELLEYIRQLEQRLETVADA 407
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
951-1222 |
4.10e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 951 QQLQRTlaeEQHKNQLL------------QEELEALQLQLRALEQE-TRDGGQEYVVKEVLRiepdraqadevlQLREEL 1017
Cdd:COG3096 809 QKLQRL---HQAFSQFVgghlavafapdpEAELAALRQRRSELERElAQHRAQEQQLRQQLD------------QLKEQL 873
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1018 EALRRQKGarEAEVLL---LQQRVAALAEEKSRAQE------------KVTEKEVVKLQNDPQ----LEAEYQQLQEDHQ 1078
Cdd:COG3096 874 QLLNKLLP--QANLLAdetLADRLEELREELDAAQEaqafiqqhgkalAQLEPLVAVLQSDPEqfeqLQADYLQAKEQQR 951
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1079 RQDQlrekQEEELSFL---------QDKLKRLEKERAMAEgkiTVKEVLKvekDAATEREVSDLT-RQYEDEAAKA---- 1144
Cdd:COG3096 952 RLKQ----QIFALSEVvqrrphfsyEDAVGLLGENSDLNE---KLRARLE---QAEEARREAREQlRQAQAQYSQYnqvl 1021
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1145 -------RASQREKTELLRKIWALE-------EENAKVVVQEKVREIVRPDPK----------AESEVANLRLELVEQER 1200
Cdd:COG3096 1022 aslkssrDAKQQTLQELEQELEELGvqadaeaEERARIRRDELHEELSQNRSRrsqlekqltrCEAEMDSLQKRLRKAER 1101
|
330 340
....*....|....*....|..
gi 1519473553 1201 KYRGAEEQLRSYQSELEALRRR 1222
Cdd:COG3096 1102 DYKQEREQVVQAKAGWCAVLRL 1123
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
887-1419 |
4.12e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.05 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 887 SGVEEAWKIRKELDEETERRRQLENEVKSTQEEIWTL-RNQGPQESVVRKEVLKKVPDPV--LEESFQQLQRTLAEEQHK 963
Cdd:pfam07111 112 AGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLhQEQLSSLTQAHEEALSSLTSKAegLEKSLNSLETKRAGEAKQ 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 964 NQLLQEELEALQLQLRALEQETR------DGGQEYVVKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQR 1037
Cdd:pfam07111 192 LAEAQKEAELLRKQLSKTQEELEaqvtlvESLRKYVGEQVPPEVHSQTWELERQELLDTMQHLQEDRADLQATVELLQVR 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1038 VAALAEEKSRAQEKVTEKevvkLQNDPQLEAEYQQlqedhQRQDQLREKQEEELSFL-QDKLKRLEKERAMAEGKITVKE 1116
Cdd:pfam07111 272 VQSLTHMLALQEEELTRK----IQPSDSLEPEFPK-----KCRSLLNRWREKVFALMvQLKAQDLEHRDSVKQLRGQVAE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1117 V-----LKVEKDAATEREVSDLTRQYEDEAAKARASQRE--KTELLRKIW----ALEEENAKVVV------QEKVREIVR 1179
Cdd:pfam07111 343 LqeqvtSQSQEQAILQRALQDKAAEVEVERMSAKGLQMElsRAQEARRRQqqqtASAEEQLKFVVnamsstQIWLETTMT 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1180 PDPKAESEVANLRLELVEQERKYRGAEEqlrsyqseLEALRRRGPQVEVKEVTKEVIKYKTDPEMEKELQRLREEivdKT 1259
Cdd:pfam07111 423 RVEQAVARIPSLSNRLSYAVRKVHTIKG--------LMARKVALAQLRQESCPPPPPAPPVDADLSLELEQLREE---RN 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1260 RLIERCDLEIYQLKKEIQALKDT--KPQVQTKEVVQEILQfqEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIA 1337
Cdd:pfam07111 492 RLDAELQLSAHLIQQEVGRAREQgeAERQQLSEVAQQLEQ--ELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELT 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1338 RKEEelsrVKERVVQQEVVryEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTELERQLEE----------LE 1407
Cdd:pfam07111 570 QQQE----IYGQALQEKVA--EVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQElrrlqdearkEE 643
|
570
....*....|..
gi 1519473553 1408 RERQARREAERE 1419
Cdd:pfam07111 644 GQRLARRVQELE 655
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1071-1187 |
4.14e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.72 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1071 QQLQEDHQRQDQLREKQEE--------ELSFLQDKLKRLEKERAMAEGKItvKEVLKVEKDAATEREVSDLTRQYEDEAA 1142
Cdd:PRK09510 68 QQQQKSAKRAEEQRKKKEQqqaeelqqKQAAEQERLKQLEKERLAAQEQK--KQAEEAAKQAALKQKQAEEAAAKAAAAA 145
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1519473553 1143 KARASQREKtellrkiwALEEENAKVVVQEKVREIVRPDPKAESE 1187
Cdd:PRK09510 146 KAKAEAEAK--------RAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
894-1264 |
4.21e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.75 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 894 KIRKELDEETERRRQLENEVKSTQEEIWTLRNqgpQESVVRKEVLKkvpdpvLEESFQQLQRTLAEEQHK----NQLLQE 969
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQILEELQELLE---SEEKNREEVEQ------LKDLYRELRKSLLANRFSfgpaLDELEK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 970 ELEALQLQLRALEQETRDGgqeyvvkevlriepDRAQADEVL-QLREELEALRRQ-----KGAREAEVLLLQQ------- 1036
Cdd:PRK04778 173 QLENLEEEFSQFVELTESG--------------DYVEAREILdQLEEELAALEQImeeipELLKELQTELPDQlqelkag 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1037 ------------------RVAALAEEKSRAQE-------KVTEKEVVKLQND-----PQLEAEYQQLQEDHQRQDQLR-- 1084
Cdd:PRK04778 239 yrelveegyhldhldiekEIQDLKEQIDENLAlleeldlDEAEEKNEEIQERidqlyDILEREVKARKYVEKNSDTLPdf 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1085 -EKQEEELSFLQDKLKRLEKERAMAEGkitvkEVLKVEKdaaTEREVSDLTRQYED-----EAAKARAS--QREKTELLR 1156
Cdd:PRK04778 319 lEHAKEQNKELKEEIDRVKQSYTLNES-----ELESVRQ---LEKQLESLEKQYDEiteriAEQEIAYSelQEELEEILK 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1157 KIWALEEENAKvvVQEKVREIVRPDPKAESEVANLRLELVEQERK----------------YRGAEEQLRSYQSELEALR 1220
Cdd:PRK04778 391 QLEEIEKEQEK--LSEMLQGLRKDELEAREKLERYRNKLHEIKRYleksnlpglpedylemFFEVSDEIEALAEELEEKP 468
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1519473553 1221 rrgpqVEVKEVTKEVIKYKTDPEmekELQRLREEIVDKTRLIER 1264
Cdd:PRK04778 469 -----INMEAVNRLLEEATEDVE---TLEEETEELVENATLTEQ 504
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
854-1128 |
4.27e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 854 RQRLQNLEFALNLLRQ-QPEVEVthetLQRNRPDSGVEEawkIRKELDEETERRR----------QLENEV---KSTQEE 919
Cdd:PRK04863 864 RSQLEQAKEGLSALNRlLPRLNL----LADETLADRVEE---IREQLDEAEEAKRfvqqhgnalaQLEPIVsvlQSDPEQ 936
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 920 IWTLRNQGPQESVVRKEV------LKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALEQETRDGGQEYv 993
Cdd:PRK04863 937 FEQLKQDYQQAQQTQRDAkqqafaLTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQL- 1015
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 994 vkevlriepdrAQADEVLQ-LREELEALRRQKGAREAEVLLLQQRVAALAEEKSRAQEkvtekevvklqndpqlEAEYQQ 1072
Cdd:PRK04863 1016 -----------AQYNQVLAsLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR----------------DELHAR 1068
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1519473553 1073 LQEDHQRQDQL---REKQEEELSFLQDKLKRLEKE-----RAMAEGKITVKEVLKVEKDAATER 1128
Cdd:PRK04863 1069 LSANRSRRNQLekqLTFCEAEMDNLTKKLRKLERDyhemrEQVVNAKAGWCAVLRLVKDNGVER 1132
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
994-1270 |
4.62e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 994 VKEVLRIEPDRaQADEVLQ-LRE----ELEALRRQKgarEAEVLllqQRVAALAEEKSRAQEKVTE-KEVVKLQNDPQLE 1067
Cdd:PRK05771 6 MKKVLIVTLKS-YKDEVLEaLHElgvvHIEDLKEEL---SNERL---RKLRSLLTKLSEALDKLRSyLPKLNPLREEKKK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1068 AEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKvekdaATEREVSDLtrqYEDEAAKARAS 1147
Cdd:PRK05771 79 VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWG-----NFDLDLSLL---LGFKYVSVFVG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1148 QREKTELLRKIWALEEENAKVVVQEKVRE--IVRPDPKAESEVANL--RLELVEQERKYRG-AEEQLRSYQSELEALRRr 1222
Cdd:PRK05771 151 TVPEDKLEELKLESDVENVEYISTDKGYVyvVVVVLKELSDEVEEElkKLGFERLELEEEGtPSELIREIKEELEEIEK- 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1519473553 1223 gpqvEVKEVTKEVIKYKTdpEMEKELQRLREEIvdktrLIERCDLEIY 1270
Cdd:PRK05771 230 ----ERESLLEELKELAK--KYLEELLALYEYL-----EIELERAEAL 266
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1018-1170 |
5.18e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1018 EALRRQKGAREAEVLllqqRVAALAEEKSRAQEKVTEKEVVKLQNDPQ-LEAEYQQLQEDHQRQDQLREKQEEELSFLQD 1096
Cdd:COG2433 380 EALEELIEKELPEEE----PEAEREKEHEERELTEEEEEIRRLEEQVErLEAEVEELEAELEEKDERIERLERELSEARS 455
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1519473553 1097 KLKRlekeramaegkitvkEVLKVEKDAATEREVSDLTRQYEDEAAKARASQReKTELLRKIWALEEENAKVVV 1170
Cdd:COG2433 456 EERR---------------EIRKDREISRLDREIERLERELEEERERIEELKR-KLERLKELWKLEHSGELVPV 513
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1298-1656 |
5.32e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1298 FQEDPQtkEEVASLRAKLSEeqkkqvdLERERASQEEQIARKEEELSRVKERVvqqEVVRyeeepGLRAEASAFAESiDV 1377
Cdd:COG3096 830 FAPDPE--AELAALRQRRSE-------LERELAQHRAQEQQLRQQLDQLKEQL---QLLN-----KLLPQANLLADE-TL 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1378 ELRqIDKLRAELRRLQrrrtelerqleelererqarrEAEREVQRLQQRLAALEqeeaearekvthTQKVVLQQDPQQar 1457
Cdd:COG3096 892 ADR-LEELREELDAAQ---------------------EAQAFIQQHGKALAQLE------------PLVAVLQSDPEQ-- 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1458 eHALLRLQLEEEQHRRQllegeleTLRRKLAAL-EKAEVKEKVVLSESVQVEKGDTEQEiQRLKSSLEEESRSKRELDVE 1536
Cdd:COG3096 936 -FEQLQADYLQAKEQQR-------RLKQQIFALsEVVQRRPHFSYEDAVGLLGENSDLN-EKLRARLEQAEEARREAREQ 1006
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1537 VSRLEARLSEL--EFHNSKSSKE--LDFLREenhklqLERQNLQLETrRLQSEINMAATETRDLRNMTVadsgTNHDSRL 1612
Cdd:COG3096 1007 LRQAQAQYSQYnqVLASLKSSRDakQQTLQE------LEQELEELGV-QADAEAEERARIRRDELHEEL----SQNRSRR 1075
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1519473553 1613 WSLERELDDLKRlskdkdlEIDELQKRLGSV----AVKREQRENHLRR 1656
Cdd:COG3096 1076 SQLEKQLTRCEA-------EMDSLQKRLRKAerdyKQEREQVVQAKAG 1116
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
969-1096 |
5.72e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 969 EELEALQLQLRALEQEtrdggqeyvvKEVLRIEPDRAQADEVLQLREELEALRRQKGAREAEvlllqqrvaaLAEEKSRA 1048
Cdd:COG0542 411 EELDELERRLEQLEIE----------KEALKKEQDEASFERLAELRDELAELEEELEALKAR----------WEAEKELI 470
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1519473553 1049 QEKVTEKEvvklqndpQLEAEYQQLQEDHQRQDQLREKQEEELSFLQD 1096
Cdd:COG0542 471 EEIQELKE--------ELEQRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
924-1146 |
7.00e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.95 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 924 RNQGPQESVVRKEvlkKVPDPVLEESFQQLQRTLAEEQHK-NQLLQEELEALQLQLRALEQETRDGGQEYVVKEVlriep 1002
Cdd:PRK09510 66 RQQQQQKSAKRAE---EQRKKKEQQQAEELQQKQAAEQERlKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA----- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1003 dRAQADEVLQLREELEALRRQKGAREAEvlllqqrvaalAEEKSRAQEKVTEKEVVKLQNDPQLEAEYQQLQEDHQRQDQ 1082
Cdd:PRK09510 138 -AAKAAAAAKAKAEAEAKRAAAAAKKAA-----------AEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEA 205
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1519473553 1083 LREKqeeelsflqdKLKRLEKERAMAEGKItVKEVLKVEKDAATEREVSDLTRQYEDEAAKARA 1146
Cdd:PRK09510 206 EAKK----------KAAAEAKKKAAAEAKA-AAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1325-1548 |
9.22e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 9.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1325 LERERASQEEQIARKEEELSRVKERV--VQQEVVRYEEEPGLraeaSAFAESIDVELRQIDKLRAELRRLQRRRtelerq 1402
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELeeAEAALEEFRQKNGL----VDLSEEAKLLLQQLSELESQLAEARAEL------ 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1403 leelererqarREAEREVQRLQQRLAALEQEEAEAREKVTHTQkvVLQQDPQQAREHALLRLQLEEEQHRRQLLEGELET 1482
Cdd:COG3206 236 -----------AEAEARLAALRAQLGSGPDALPELLQSPVIQQ--LRAQLAELEAELAELSARYTPNHPDVIALRAQIAA 302
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1519473553 1483 LRRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKREL-----DVEVSR-----LEARLSELE 1548
Cdd:COG3206 303 LRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELrrlerEVEVARelyesLLQRLEEAR 378
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1459-1587 |
9.41e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.13 E-value: 9.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1459 HALLRLQLEEEQHRRQLLEGELETLRRKLAALeKAEVKEkvvLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVEVS 1538
Cdd:pfam09787 42 STALTLELEELRQERDLLREEIQKLRGQIQQL-RTELQE---LEAQQQEEAESSREQLQELEEQLATERSARREAEAELE 117
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1519473553 1539 RLEarlselefhnskssKELDFLREEnhkLQLERQNLQLETRRLQSEIN 1587
Cdd:pfam09787 118 RLQ--------------EELRYLEEE---LRRSKATLQSRIKDREAEIE 149
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
968-1135 |
9.82e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 9.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 968 QEELEALQLQLRALEQetrdggqeyvvkeVLRIEPDRAQadevlQLREELEALRRQKGAREAEVLLLQQRVAALAEEKSR 1047
Cdd:PRK09039 52 DSALDRLNSQIAELAD-------------LLSLERQGNQ-----DLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519473553 1048 AQEKVTEKEvvklqndPQLEAEYQQLQEDHQRQDQLREKQE---EELSFLQDKLKRLEKERAMAEGKItvkEVLKVEKDA 1124
Cdd:PRK09039 114 AEGRAGELA-------QELDSEKQVSARALAQVELLNQQIAalrRQLAALEAALDASEKRDRESQAKI---ADLGRRLNV 183
|
170
....*....|.
gi 1519473553 1125 ATEREVSDLTR 1135
Cdd:PRK09039 184 ALAQRVQELNR 194
|
|
| |
