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Conserved domains on  [gi|1510251675|gb|AYR06715|]
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cytochrome b (mitochondrion) [Xiphidiopsis gurneyi]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 719.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  12 FKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  92 FICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 172 DNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLSLLEPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQILFWSMAT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1510251675 332 IVILLTWIGARPVEDPYILTGQILTVLYFAYYLINP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 719.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  12 FKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  92 FICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 172 DNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLSLLEPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQILFWSMAT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1510251675 332 IVILLTWIGARPVEDPYILTGQILTVLYFAYYLINP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-365 1.58e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 366.81  E-value: 1.58e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  17 NALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFFFICLY 96
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  97 LHVGRGMYYGSYNYMH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSVDNA 174
Cdd:COG1290   105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 175 TLTRFFTFH-FVLPFIVAAAVMIHLLFLHQTGSNNPLG----LNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLSLLEPy 249
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 250 mLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQILFW 327
Cdd:COG1290   264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1510251675 328 SMATIVILLTWIGARPveDPYILTGQILTVLYFAYYLI 365
Cdd:COG1290   343 AFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 7.74e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.85  E-value: 7.74e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  10 PLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  90 FFFICLYLHVGRGMYYGSYNYMH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1510251675 168 GFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 4.87e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.45  E-value: 4.87e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  19 LVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  99 VGRGMYYGSYNYMH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1510251675 177 TRFFTFHFVLPFIVAAAVMIHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 237-341 1.92e-13

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 67.51  E-value: 1.92e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 237 VATLIFLSLLEPYMLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFY-NSNKFRG 315
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*.
gi 1510251675 316 IQFYPLNQILFWsMATIVILLTWIGA 341
Cdd:TIGR01156 123 PFRRPVATTVFL-FGTVVALWLGIGA 147
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 719.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  12 FKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  92 FICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 172 DNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLSLLEPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQILFWSMAT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1510251675 332 IVILLTWIGARPVEDPYILTGQILTVLYFAYYLINP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 648.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   1 MNKPMRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  81 RTLHANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVD 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 241 IFLSLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1510251675 321 LNQILFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLINPLTLMMWDKLM 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00131
cytochrome b; Provisional
 5-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 639.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   5 MRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  85 ANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 165 VWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLS 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 245 LLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQI 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1510251675 325 LFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI-NPLTLMMWDKLMN 378
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVlMPLAGWLENKALE 378
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 634.63  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   1 MNKPMRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  81 RTLHANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVD 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 241 IFLSLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1510251675 321 LNQILFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI-NPLTLMMWDKLMN 378
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIlFPLLGALENKMLN 379
CYTB MTH00016
cytochrome b; Validated
 1-376 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 626.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   1 MNKPMRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  81 RTLHANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVD 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 241 IFLSLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1510251675 321 LNQILFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLINPLTLMMWDKL 376
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKL 376
CYTB MTH00074
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 626.32  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   1 MNKPMRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  81 RTLHANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVD 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 241 IFLSLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1510251675 321 LNQILFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYL-INPLTLMMWDKLMN 378
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIiIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 620.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   5 MRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  85 ANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 165 VWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLS 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 245 LLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQI 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1510251675 325 LFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 4-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 614.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   4 PMRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTL 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  84 HANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 164 WVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFL 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 244 SLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1510251675 324 ILFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI-NPLTLMMWDKLM 377
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILIlMPIASLIENNLL 377
CYTB MTH00034
cytochrome b; Validated
 4-378 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 579.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   4 PMRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTL 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  84 HANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 164 WVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFL 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 244 SLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1510251675 324 ILFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI-NPLTLMMWDKLMN 378
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFfFPLISYLENKLIF 378
CYTB MTH00224
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 527.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   1 MNKPMRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  81 RTLHANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVD 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 241 IFLSLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1510251675 321 LNQILFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLINPLTLMMWDKLMN 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-365 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 513.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   4 PMRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTL 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  84 HANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 164 WVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFL 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 244 SLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1510251675 324 ILFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 508.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675   1 MNKPMRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFL 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  81 RTLHANGASFFFICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVD 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 161 LVQWVWGGFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 241 IFLSLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1510251675 321 LNQILFWSMATIVILLTWIGARPVEDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
 17-365 8.24e-137

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 395.08  E-value: 8.24e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  17 NALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFFFICLY 96
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  97 LHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSVDNATL 176
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 177 TRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLSlLEPY---MLGD 253
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 254 PDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQILFWSMATIV 333
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1510251675 334 ILLTWIGARPV-EDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00033  332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 16-365 1.80e-127

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 370.42  E-value: 1.80e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  16 NNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFFFICL 95
Cdd:MTH00086    4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  96 YLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSVDNAT 175
Cdd:MTH00086   84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 176 LTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVaTLIFLSLLEPYMLGDPD 255
Cdd:MTH00086  164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPE 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 256 NFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSnkfRGIQFYPLNQILFWSMATIVIL 335
Cdd:MTH00086  243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNN---YTSCLNKLNKFLVFSFIVVNVI 319

                         330       340       350
                  ....*....|....*....|....*....|
gi 1510251675 336 LTWIGARPVEDPYILTGQILTVLYFAYYLI 365
Cdd:MTH00086  320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-365 1.58e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 366.81  E-value: 1.58e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  17 NALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFFFICLY 96
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  97 LHVGRGMYYGSYNYMH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSVDNA 174
Cdd:COG1290   105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 175 TLTRFFTFH-FVLPFIVAAAVMIHLLFLHQTGSNNPLG----LNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLSLLEPy 249
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 250 mLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQILFW 327
Cdd:COG1290   264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1510251675 328 SMATIVILLTWIGARPveDPYILTGQILTVLYFAYYLI 365
Cdd:COG1290   343 AFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 7.74e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.85  E-value: 7.74e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  10 PLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  90 FFFICLYLHVGRGMYYGSYNYMH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1510251675 168 GFSVDNATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 13-358 2.29e-86

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 265.69  E-value: 2.29e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  13 KIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFFF 92
Cdd:MTH00046    3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  93 ICLYLHVGRGMYYGSYNYMHTWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSVD 172
Cdd:MTH00046   83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 173 NATLTRFFTFHFVLPFIVAAAVMIHLLFLHQTGSNNPLGL-NSDVDKIPFHPYFSFKDVFGFIVMVATLIFLSLLEPYML 251
Cdd:MTH00046  163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 252 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIaLVMSIAILLILPFYNSNKFRGIqfypLNQILFWSMAT 331
Cdd:MTH00046  243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVS 317

                         330       340
                  ....*....|....*....|....*..
gi 1510251675 332 IVILLTWIGARPVEDPYILTGQILTVL 358
Cdd:MTH00046  318 LFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 4.87e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.45  E-value: 4.87e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  19 LVDLPAPSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFFFICLYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  99 VGRGMYYGSYNYMH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1510251675 177 TRFFTFHFVLPFIVAAAVMIHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 3.04e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 160.12  E-value: 3.04e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 208 NPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLSLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1510251675 288 KLGGVIALVMSIAILLILPFYNSNKFRGiQFYPLNQILFWSMATIVILLTWIGARPVEDPYILTGQI 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 2.05e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 158.94  E-value: 2.05e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  89 SFFFICLYLHVGRGMYYGSYNYMH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 167 GGFSVDNATLTRFFTFHF-VLPFIVAAAVMIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDVFGFIVMVATLIFLSL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1510251675 246 LEPYMLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 3.79e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 142.62  E-value: 3.79e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFYNSNKFRGIQFYPLNQILFWSMATIVILLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1510251675 339 IGARPVEDPYILTGQILTVLY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 2.68e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 136.77  E-value: 2.68e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  34 FGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFFFICLYLHVGRGMYYGSYNYMH- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 113 -TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSVDNATLTRFFTFH-FVLPFIV 190
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1510251675 191 AAAVMIHLLFLHQTGSNNPL 210
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 2.65e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.99  E-value: 2.65e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675  25 PSNISAWWNFGSLLGLCLMIQIATGLFLAMHYTANIDLAFNSVAHICRDVNYGWFLRTLHANGASFFFICLYLHVGRGMY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 105 YGSYNYMH--TWMTGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYLGVDLVQWVWGGFSVDNATLTRFFTF 182
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1510251675 183 H-FVLPFIVAAAVMIHLLFLHQTGSNNPL 210
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 230-350 8.21e-16

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 74.06  E-value: 8.21e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 230 VFGFIVM--VATLIFLSLLEPYMLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPF 307
Cdd:COG5679    40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1510251675 308 Y-NSNKFRGIQFYPLNQILFwSMATIVILLTWIGAR-PVEDPYIL 350
Cdd:COG5679   115 IeNVNKFQNPFRRPVATAVF-LFGTLVTLWLGIGAAlPIDKSLTL 158
petD CHL00058
cytochrome b6/f complex subunit IV
 237-341 1.04e-15

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 73.88  E-value: 1.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 237 VATLIFLSLLEPYMLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFY-NSNKFRG 315
Cdd:CHL00058   48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*.
gi 1510251675 316 IQFYPLNQILFwSMATIVILLTWIGA 341
Cdd:CHL00058  123 PFRRPVATTVF-LIGTAVALWLGIGA 147
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 237-341 1.92e-13

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 67.51  E-value: 1.92e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1510251675 237 VATLIFLSLLEPYMLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILLILPFY-NSNKFRG 315
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*.
gi 1510251675 316 IQFYPLNQILFWsMATIVILLTWIGA 341
Cdd:TIGR01156 123 PFRRPVATTVFL-FGTVVALWLGIGA 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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