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Conserved domains on  [gi|1509836701|ref|YP_009520491|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Nilssonia nigricans]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.80e-55

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 168.17  E-value: 1.80e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   1 MNTTTSLIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1509836701  81 QLTTPMYSLMWTMIILSLLTFGFIYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.80e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 168.17  E-value: 1.80e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   1 MNTTTSLIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1509836701  81 QLTTPMYSLMWTMIILSLLTFGFIYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 2.95e-32

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 108.67  E-value: 2.95e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701  19 ILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLT-TPMYSLMWTMIILS 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFReLGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1509836701  98 LLTFGFIYEWTQGGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-114 3.44e-29

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 101.74  E-value: 3.44e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   7 LIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLTT-P 85
Cdd:COG0838    11 FLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElG 88

                          90       100
                  ....*....|....*....|....*....
gi 1509836701  86 MYSLMWTMIILSLLTFGFIYEWTQGGLEW 114
Cdd:COG0838    89 WFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.80e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 168.17  E-value: 1.80e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   1 MNTTTSLIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1509836701  81 QLTTPMYSLMWTMIILSLLTFGFIYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 5.27e-54

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 164.28  E-value: 5.27e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   2 NTTTSLIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1509836701  82 LTTPMYSLMWTMIILSLLTFGFIYEWTQGGLEWA 115
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 7-116 4.56e-52

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 159.39  E-value: 4.56e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   7 LIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLTTPM 86
Cdd:MTH00069    5 MLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPT 84

                          90       100       110
                  ....*....|....*....|....*....|
gi 1509836701  87 YSLMWTMIILSLLTFGFIYEWTQGGLEWAE 116
Cdd:MTH00069   85 NTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 8.50e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 128.52  E-value: 8.50e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   1 MNTTTSLIIlATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00106    1 MNLMLTLLT-NTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1509836701  81 QLTTPMYSLMWTMIILSLLTFGFIYEWTQGGLEWAE 116
Cdd:MTH00106   80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 2.18e-39

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 127.41  E-value: 2.18e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   1 MNTTTSLIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1509836701  81 QLTTPMYSLMWTMIILSLLTFGFIYEWTQGGLEWAE 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 2.59e-37

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 121.93  E-value: 2.59e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   1 MNTTTSLIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1509836701  81 QLTTPmySLMWTMIILSLLTFGFIYEWTQGGLEW 114
Cdd:MTH00203   81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 2.95e-32

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 108.67  E-value: 2.95e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701  19 ILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLT-TPMYSLMWTMIILS 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFReLGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 1509836701  98 LLTFGFIYEWTQGGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 5-116 1.79e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 102.24  E-value: 1.79e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   5 TSLIILATTISTILILLNSQLATMK---PNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQ 81
Cdd:MTH00148    3 SILLSLLFALILSPVLLLLGLVLSKrsySDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLG 82

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1509836701  82 LTTPMYSLMWTMIILSLLTFGFIYEWTQGGLEWAE 116
Cdd:MTH00148   83 SSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-114 3.44e-29

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 101.74  E-value: 3.44e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   7 LIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLTT-P 85
Cdd:COG0838    11 FLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRElG 88

                          90       100
                  ....*....|....*....|....*....
gi 1509836701  86 MYSLMWTMIILSLLTFGFIYEWTQGGLEW 114
Cdd:COG0838    89 WFGLIEMLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-115 1.73e-28

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 99.94  E-value: 1.73e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   8 IILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLTTPMY 87
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGW 92

                          90       100
                  ....*....|....*....|....*....
gi 1509836701  88 SLMWTMII-LSLLTFGFIYEWTQGGLEWA 115
Cdd:PRK06602   93 LGFVEAMIfILVLLVGLVYLWRKGALDWE 121
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 8-114 6.92e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 98.31  E-value: 6.92e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   8 IILATTISTILILLNSQLA-TMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLTTPM 86
Cdd:MTH00161    6 LLIILLISIILMILASLLSkKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMM 85

                          90       100
                  ....*....|....*....|....*...
gi 1509836701  87 YSLMWTMIILSLLTFGFIYEWTQGGLEW 114
Cdd:MTH00161   86 SWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 7-114 9.14e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 95.55  E-value: 9.14e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   7 LIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLTTPM 86
Cdd:MTH00055   11 LLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIG 88

                          90       100
                  ....*....|....*....|....*....
gi 1509836701  87 YSLMWTMII-LSLLTFGFIYEWTQGGLEW 114
Cdd:MTH00055   89 LFGFWVMYLfLIILTIGLIYEWVKGGLEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 2.14e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 94.67  E-value: 2.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   1 MNTTTSLIILATTISTILILLnSQLATMKPNN--EKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPW 78
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLV-SWMLSFRSLMdrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPL 79

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1509836701  79 AIQLTTPMYSLMWTMIILSLLTFGFIYEWTQGGLEWAE 116
Cdd:MTH00202   80 VLKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 7-114 5.25e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 93.59  E-value: 5.25e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   7 LIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLTTPM 86
Cdd:MTH00018    6 LLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIA 83

                          90       100
                  ....*....|....*....|....*....
gi 1509836701  87 YSLMWTMII-LSLLTFGFIYEWTQGGLEW 114
Cdd:MTH00018   84 PFGFWTMVGfLFILTLGLIYEWIKGGLEW 112
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 2.57e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 86.84  E-value: 2.57e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   1 MNTTTSLIILATTISTILILLNSQLATMKPNN-EKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1509836701  80 IQLTTPMYSLMWTMIILSLLTFGFIYEWTQGGLEWA 115
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 2-114 6.74e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 78.44  E-value: 6.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   2 NTTTSLIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQ 81
Cdd:MTH00030   11 STLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIV 88

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1509836701  82 LTT-PMYSLMWTMIILSLLTFGFIYEWTQGGLEW 114
Cdd:MTH00030   89 FNQlNLFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 7-114 4.07e-15

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 65.85  E-value: 4.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   7 LIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLP--FSIRFFLVAILFLLFDLEIALLLPlpWAIQLTT 84
Cdd:PRK07928   10 LGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDA 87

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1509836701  85 -PMYSLMWTMIILSLLTFGFIYEWTQGGLEW 114
Cdd:PRK07928   88 lGVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
7-114 8.11e-13

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 60.07  E-value: 8.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   7 LIILATTISTILILLNS----QLATMKPNNEKLSPYECGFDPLKTTRlPFSIRFFLVAILFLLFDLEIALLlpLPWAIQL 82
Cdd:PRK08489   16 LLVLTFVAFFLTTRLARfisrKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDF 92

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1509836701  83 TT-PMYSLMWTMIILSLLTFGFIYEWTQGGLEW 114
Cdd:PRK08489   93 KLlGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
ndhC CHL00022
NADH dehydrogenase subunit 3
 8-114 2.04e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 56.15  E-value: 2.04e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   8 IILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLTT-PM 86
Cdd:CHL00022   14 LIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVlGV 91

                          90       100
                  ....*....|....*....|....*...
gi 1509836701  87 YSLMWTMIILSLLTFGFIYEWTQGGLEW 114
Cdd:CHL00022   92 SAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
29-114 6.12e-11

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 55.13  E-value: 6.12e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701  29 KPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLTT-PMYSLMWTMIILSLLTFGFIYEW 107
Cdd:PRK07756   37 KPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFL--YPWAVAYDKlGLFALIEMLIFVVMLLVGLAYAW 114


                  ....*..
gi 1509836701 108 TQGGLEW 114
Cdd:PRK07756  115 KKKVLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 7-114 1.85e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 53.74  E-value: 1.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701   7 LIILATTISTILILLNSQLATMKPNNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLpwaiqLTTPM 86
Cdd:MTH00092    7 VFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL-----LVSDF 81

                          90       100
                  ....*....|....*....|....*...
gi 1509836701  87 YSLMWTMIILSLLTFGFIYEWTQGGLEW 114
Cdd:MTH00092   82 SSLISFFMLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 31-114 4.14e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 44.89  E-value: 4.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701  31 NNEKLSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLttpMYSLMWTMIILSLLTFGFIYEWTQG 110
Cdd:MTH00060   34 GFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLL---FYNFWYYYFFLLLLFLGFVVELFSG 110


                  ....
gi 1509836701 111 GLEW 114
Cdd:MTH00060  111 YVRW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 35-114 9.22e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 36.33  E-value: 9.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509836701  35 LSPYECGFDPLKTTRLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLTT-PMYSLMWTMIILSLLTFGFIYEWTQGGLE 113
Cdd:PRK06432   64 LEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLL--FPWAFDFKRlGLIPFIETLIFLAMPLFAVYYAFKMGYMR 141


                  .
gi 1509836701 114 W 114
Cdd:PRK06432  142 W 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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