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Conserved domains on  [gi|1509401265|gb|AYQ64409|]
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recombination protein NinB [Klebsiella pneumoniae]

Protein Classification

recombination protein NinB( domain architecture ID 10530491)

recombination protein NinB is a phage recombinase that participates in the early stages of recombination by supplying a function equivalent to the Escherichia coli RecFOR complex

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NinB pfam05772
NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and ...
 4-126 2.13e-50

NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.


:

Pssm-ID: 428623  Cd Length: 117  Bit Score: 157.15  E-value: 2.13e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509401265   4 QFCLINDHVKRNVVNFIQSLPVDHRSPLIIEAREESRTDKQNRLMWPLLKDLSDQVIWHGEKLEPAEWKDLITVLVSQmq 83
Cdd:pfam05772   1 TFFLRSPAIKQNAIHAIAQLPVDQDKPLVVEIRPRTRSLDQNAKLWALLGDIARQVEWHGEKLDAEDWKDLLTAALKQ-- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1509401265  84 nperKQKSAPGINGGLVYFGVRTSQSSKRYMVEVIEAIYWFGT 126
Cdd:pfam05772  79 ----AQKVVPGLDGGFVVLGQSTSKMSVKEMAELIELITAFGA 117
 
Name Accession Description Interval E-value
NinB pfam05772
NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and ...
 4-126 2.13e-50

NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.


Pssm-ID: 428623  Cd Length: 117  Bit Score: 157.15  E-value: 2.13e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509401265   4 QFCLINDHVKRNVVNFIQSLPVDHRSPLIIEAREESRTDKQNRLMWPLLKDLSDQVIWHGEKLEPAEWKDLITVLVSQmq 83
Cdd:pfam05772   1 TFFLRSPAIKQNAIHAIAQLPVDQDKPLVVEIRPRTRSLDQNAKLWALLGDIARQVEWHGEKLDAEDWKDLLTAALKQ-- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1509401265  84 nperKQKSAPGINGGLVYFGVRTSQSSKRYMVEVIEAIYWFGT 126
Cdd:pfam05772  79 ----AQKVVPGLDGGFVVLGQSTSKMSVKEMAELIELITAFGA 117
 
Name Accession Description Interval E-value
NinB pfam05772
NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and ...
 4-126 2.13e-50

NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.


Pssm-ID: 428623  Cd Length: 117  Bit Score: 157.15  E-value: 2.13e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1509401265   4 QFCLINDHVKRNVVNFIQSLPVDHRSPLIIEAREESRTDKQNRLMWPLLKDLSDQVIWHGEKLEPAEWKDLITVLVSQmq 83
Cdd:pfam05772   1 TFFLRSPAIKQNAIHAIAQLPVDQDKPLVVEIRPRTRSLDQNAKLWALLGDIARQVEWHGEKLDAEDWKDLLTAALKQ-- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1509401265  84 nperKQKSAPGINGGLVYFGVRTSQSSKRYMVEVIEAIYWFGT 126
Cdd:pfam05772  79 ----AQKVVPGLDGGFVVLGQSTSKMSVKEMAELIELITAFGA 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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