NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15081550|ref|NP_150080|]
View 

12.7 kDa non-structural protein [Bovine coronavirus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Corona_NS12-7 pfam04753
Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural ...
 1-109 2.74e-69

Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural protein found in some beta coronaviruses. It is known as the NS12.7 family after its predicted molecular weight. The function of this protein is unknown.


:

Pssm-ID: 461419  Cd Length: 109  Bit Score: 202.42  E-value: 2.74e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15081550     1 MDIWKPEIKYLRYTNGFNVSELEDACFKFNYKFPKVGYCRVPSHAWCRNQGSFCATLTLYGKSKHYDKYFGVITGFTAFA 80
Cdd:pfam04753   1 MDIWHVSDAWLRYTRDFGVYRLEDFCFQFNYKQPRVGYCRVPNKAWCRNQGKFAATFTLYGKEKHGDKYFGIITGFTAFG 80

                          90       100
                  ....*....|....*....|....*....
gi 15081550    81 NTVEEAVNKLVFLAVDFITWRRQELNVYG 109
Cdd:pfam04753  81 NTVEEAVNKLVEEAVDFILWRATQLNRYG 109
 
Name Accession Description Interval E-value
Corona_NS12-7 pfam04753
Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural ...
 1-109 2.74e-69

Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural protein found in some beta coronaviruses. It is known as the NS12.7 family after its predicted molecular weight. The function of this protein is unknown.


Pssm-ID: 461419  Cd Length: 109  Bit Score: 202.42  E-value: 2.74e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15081550     1 MDIWKPEIKYLRYTNGFNVSELEDACFKFNYKFPKVGYCRVPSHAWCRNQGSFCATLTLYGKSKHYDKYFGVITGFTAFA 80
Cdd:pfam04753   1 MDIWHVSDAWLRYTRDFGVYRLEDFCFQFNYKQPRVGYCRVPNKAWCRNQGKFAATFTLYGKEKHGDKYFGIITGFTAFG 80

                          90       100
                  ....*....|....*....|....*....
gi 15081550    81 NTVEEAVNKLVFLAVDFITWRRQELNVYG 109
Cdd:pfam04753  81 NTVEEAVNKLVEEAVDFILWRATQLNRYG 109
 
Name Accession Description Interval E-value
Corona_NS12-7 pfam04753
Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural ...
 1-109 2.74e-69

Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural protein found in some beta coronaviruses. It is known as the NS12.7 family after its predicted molecular weight. The function of this protein is unknown.


Pssm-ID: 461419  Cd Length: 109  Bit Score: 202.42  E-value: 2.74e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15081550     1 MDIWKPEIKYLRYTNGFNVSELEDACFKFNYKFPKVGYCRVPSHAWCRNQGSFCATLTLYGKSKHYDKYFGVITGFTAFA 80
Cdd:pfam04753   1 MDIWHVSDAWLRYTRDFGVYRLEDFCFQFNYKQPRVGYCRVPNKAWCRNQGKFAATFTLYGKEKHGDKYFGIITGFTAFG 80

                          90       100
                  ....*....|....*....|....*....
gi 15081550    81 NTVEEAVNKLVFLAVDFITWRRQELNVYG 109
Cdd:pfam04753  81 NTVEEAVNKLVEEAVDFILWRATQLNRYG 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH