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Conserved domains on  [gi|149935607|gb|ABR42304|]
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glycosyltransferase family 51, candidate monofunctional monofunctional peptidoglycan glycosyltransferase [Parabacteroides distasonis ATCC 8503]

Protein Classification

biosynthetic peptidoglycan transglycosylase( domain architecture ID 1001727)

biosynthetic peptidoglycan transglycosylase is involved in the final stages of peptidoglycan synthesis

CATH:  1.10.3810.10
Gene Ontology:  GO:0071555|GO:0008955|GO:0009252|GO:0008360
PubMed:  8830253
SCOP:  4002510

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13481 super family cl29529
glycosyltransferase; Provisional
 11-225 1.44e-79

glycosyltransferase; Provisional


The actual alignment was detected with superfamily member TIGR02070:

Pssm-ID: 475222 [Multi-domain]  Cd Length: 224  Bit Score: 239.29  E-value: 1.44e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   11 IWCRNLLIFlFVSSILAVMVYKFVPVYYTPLMFIRMYEQHQDGKKMK-LDHTWVPISKIAQPLVQAVIASEDNLFMEHNG 89
Cdd:TIGR02070   6 CLVAGVLLF-NLAVFAALASWRFVPPPSTAFMVAEKLALWGQGDPTCgIQHRWRPYDQISPNLKRAVIASEDAKFVEHHG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   90 FDVEQIQKARAEAEK-GKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVYFTFLIEWIWGKERIMEVYLNSIEMGEGIYG 168
Cdd:TIGR02070  85 FDWEAIQDALEKNEKsGKVVRGGSTISQQLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGVFG 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 149935607  169 AEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNSAKPSPYMLKRQAKIISLMGKL 225
Cdd:TIGR02070 165 AEAAARYYFKRSASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWILKQMGYL 221
 
Name Accession Description Interval E-value
mono_pep_trsgly TIGR02070
monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the ...
 11-225 1.44e-79

monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273951 [Multi-domain]  Cd Length: 224  Bit Score: 239.29  E-value: 1.44e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   11 IWCRNLLIFlFVSSILAVMVYKFVPVYYTPLMFIRMYEQHQDGKKMK-LDHTWVPISKIAQPLVQAVIASEDNLFMEHNG 89
Cdd:TIGR02070   6 CLVAGVLLF-NLAVFAALASWRFVPPPSTAFMVAEKLALWGQGDPTCgIQHRWRPYDQISPNLKRAVIASEDAKFVEHHG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   90 FDVEQIQKARAEAEK-GKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVYFTFLIEWIWGKERIMEVYLNSIEMGEGIYG 168
Cdd:TIGR02070  85 FDWEAIQDALEKNEKsGKVVRGGSTISQQLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGVFG 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 149935607  169 AEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNSAKPSPYMLKRQAKIISLMGKL 225
Cdd:TIGR02070 165 AEAAARYYFKRSASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWILKQMGYL 221
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
 60-222 5.34e-65

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 459993 [Multi-domain]  Cd Length: 177  Bit Score: 200.44  E-value: 5.34e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   60 HTWVPISKIAQPLVQAVIASEDNLFMEHNGFDVEQIQKA-RAEAEKGKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVY 138
Cdd:pfam00912  13 REYVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARAlLSNLRSGRIVQGGSTITQQLAKNLFLTPERTLTRKLKEAV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  139 FTFLIEWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNSAKPSPYMLKRQAKI 218
Cdd:pfam00912  93 LALKLERRYSKDEILEAYLNTVYFGRGAYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYNPLRNPERAKRRRNLV 172


                  ....
gi 149935607  219 ISLM 222
Cdd:pfam00912 173 LDRM 176
MrcB COG0744
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
 1-232 1.91e-63

Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440507 [Multi-domain]  Cd Length: 630  Bit Score: 209.39  E-value: 1.91e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   1 MVAPLVKRIWIWCRNLLIFLFVSSILAVMVYKFVPVYYTPLMFIRMYEQHQ----------DGKKM----KLDHTWVPIS 66
Cdd:COG0744    1 MAKPRRGKRLLRRLLGLLLLLLAVLVLAALAGLVALYVADLPDPEELEDLAlpqtstiydrDGTLIatlgDENREWVPLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  67 KIAQPLVQAVIASEDNLFMEHNGFDVEQIqkARA---EAEKGKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVYFTFLI 143
Cdd:COG0744   81 QIPPHLKDAVVAIEDRRFYEHGGVDPKGI--ARAlvaNLTAGGVVQGGSTITQQLVKNLFLSNERTLSRKLKEALLALKL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607 144 EWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNSAKPSPYMLKRQAKIISLMg 223
Cdd:COG0744  159 ERKYSKDEILELYLNTVYFGRGAYGIEAAAQYYFGKSASDLTLAEAALLAGLVKAPSYYDPYRNPEAAKERRNLVLDRM- 237


                 ....*....
gi 149935607 224 klikVEMGY 232
Cdd:COG0744  238 ----VEQGY 242
mrcA PRK11636
penicillin-binding protein 1a; Provisional
 51-203 2.54e-28

penicillin-binding protein 1a; Provisional


Pssm-ID: 183248 [Multi-domain]  Cd Length: 850  Bit Score: 113.69  E-value: 2.54e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  51 QDGKKMKLDhtwVPISKIAQPLVQAVIASEDNLFMEHNGFDVEQIQKARAEA-EKGKRVRGASTISQQTAKNVFLWPGKS 129
Cdd:PRK11636  60 QYGEKRRIP---LTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVAlFSGHASQGASTITQQLARNFFLSPERT 136

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149935607 130 YLRKGIEVYFTFLIEWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFN 203
Cdd:PRK11636 137 LMRKIKEAFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAPSTFN 210
 
Name Accession Description Interval E-value
mono_pep_trsgly TIGR02070
monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the ...
 11-225 1.44e-79

monofunctional biosynthetic peptidoglycan transglycosylase; This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain described by pfam00912 for transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are Proteobacteria that produce murein (peptidoglycan). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273951 [Multi-domain]  Cd Length: 224  Bit Score: 239.29  E-value: 1.44e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   11 IWCRNLLIFlFVSSILAVMVYKFVPVYYTPLMFIRMYEQHQDGKKMK-LDHTWVPISKIAQPLVQAVIASEDNLFMEHNG 89
Cdd:TIGR02070   6 CLVAGVLLF-NLAVFAALASWRFVPPPSTAFMVAEKLALWGQGDPTCgIQHRWRPYDQISPNLKRAVIASEDAKFVEHHG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   90 FDVEQIQKARAEAEK-GKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVYFTFLIEWIWGKERIMEVYLNSIEMGEGIYG 168
Cdd:TIGR02070  85 FDWEAIQDALEKNEKsGKVVRGGSTISQQLAKNLFLWSGRSYLRKGLEAWATWMLETWWSKQRILEVYLNSVEWGNGVFG 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 149935607  169 AEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNSAKPSPYMLKRQAKIISLMGKL 225
Cdd:TIGR02070 165 AEAAARYYFKRSASNLTRGQAARLAAVLPNPKYYDENRPGPYVRRKATWILKQMGYL 221
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
 60-222 5.34e-65

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 459993 [Multi-domain]  Cd Length: 177  Bit Score: 200.44  E-value: 5.34e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   60 HTWVPISKIAQPLVQAVIASEDNLFMEHNGFDVEQIQKA-RAEAEKGKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVY 138
Cdd:pfam00912  13 REYVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARAlLSNLRSGRIVQGGSTITQQLAKNLFLTPERTLTRKLKEAV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  139 FTFLIEWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNSAKPSPYMLKRQAKI 218
Cdd:pfam00912  93 LALKLERRYSKDEILEAYLNTVYFGRGAYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYNPLRNPERAKRRRNLV 172


                  ....
gi 149935607  219 ISLM 222
Cdd:pfam00912 173 LDRM 176
MrcB COG0744
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
 1-232 1.91e-63

Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440507 [Multi-domain]  Cd Length: 630  Bit Score: 209.39  E-value: 1.91e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   1 MVAPLVKRIWIWCRNLLIFLFVSSILAVMVYKFVPVYYTPLMFIRMYEQHQ----------DGKKM----KLDHTWVPIS 66
Cdd:COG0744    1 MAKPRRGKRLLRRLLGLLLLLLAVLVLAALAGLVALYVADLPDPEELEDLAlpqtstiydrDGTLIatlgDENREWVPLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  67 KIAQPLVQAVIASEDNLFMEHNGFDVEQIqkARA---EAEKGKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVYFTFLI 143
Cdd:COG0744   81 QIPPHLKDAVVAIEDRRFYEHGGVDPKGI--ARAlvaNLTAGGVVQGGSTITQQLVKNLFLSNERTLSRKLKEALLALKL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607 144 EWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNSAKPSPYMLKRQAKIISLMg 223
Cdd:COG0744  159 ERKYSKDEILELYLNTVYFGRGAYGIEAAAQYYFGKSASDLTLAEAALLAGLVKAPSYYDPYRNPEAAKERRNLVLDRM- 237


                 ....*....
gi 149935607 224 klikVEMGY 232
Cdd:COG0744  238 ----VEQGY 242
MrcA COG5009
Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];
12-232 1.27e-43

Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 444033 [Multi-domain]  Cd Length: 785  Bit Score: 157.24  E-value: 1.27e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  12 WCRNLLIFLFVSSILAVMVYKFVPVYYTP----LMFIRMYEQHQ-------DGKKM----KLDHTWVPISKIAQPLVQAV 76
Cdd:COG5009    3 LLKILLILLLLLLLLGALAVAGLYLYLSPdlpdVETLKDYQPPTpsrvysaDGKLIaefgEERRIPVPIEEIPPLLINAF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  77 IASEDNLFMEHNGFDVEQIqkARAE---AEKGKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVYFTFLIEWIWGKERIM 153
Cdd:COG5009   83 LAAEDKRFYEHPGVDPIGI--ARAAvvnLRTGRRVQGGSTITQQVAKNFLLSPERTLTRKIKEAILALRIEQELSKDEIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607 154 EVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNsakpsPY-----MLKRQAKIISLMgklikV 228
Cdd:COG5009  161 ELYLNKIYLGHRAYGVAAAAQTYFGKSLDELTLAEAAMLAGLPKAPSRYN-----PIrnperALERRNYVLGRM-----L 230


                 ....
gi 149935607 229 EMGY 232
Cdd:COG5009  231 ELGY 234
PBP_1a_fam TIGR02074
penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan ...
 61-232 9.55e-39

penicillin-binding protein, 1A family; Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273955 [Multi-domain]  Cd Length: 531  Bit Score: 141.63  E-value: 9.55e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   61 TWVPISKIAQPLVQAVIASEDNLFMEHNGFDVEQIqkARAEA---EKGKRVRGASTISQQTAKNVFLWPGKSYLRKGIEV 137
Cdd:TIGR02074   3 EYVPIDDIPENLINAFLAIEDRRFYDHFGIDLKGI--GRAAVaniTSGRVLEGGSTITQQLAKNLYLTNERTITRKIQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  138 YFTFLIEWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNSAKPSPYMLKRQAK 217
Cdd:TIGR02074  81 LLALKLEQKLSKDEILELYLNRIYFGNGAYGIEAAAQFYFGKSVNDLTLAEAAMLAGLPKAPSAYNPFKNPERAKDRRNL 160

                         170
                  ....*....|....*
gi 149935607  218 IISLMgklikVEMGY 232
Cdd:TIGR02074 161 VLSNM-----VENGY 170
mrcA PRK11636
penicillin-binding protein 1a; Provisional
 51-203 2.54e-28

penicillin-binding protein 1a; Provisional


Pssm-ID: 183248 [Multi-domain]  Cd Length: 850  Bit Score: 113.69  E-value: 2.54e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  51 QDGKKMKLDhtwVPISKIAQPLVQAVIASEDNLFMEHNGFDVEQIQKARAEA-EKGKRVRGASTISQQTAKNVFLWPGKS 129
Cdd:PRK11636  60 QYGEKRRIP---LTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVAlFSGHASQGASTITQQLARNFFLSPERT 136

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149935607 130 YLRKGIEVYFTFLIEWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFN 203
Cdd:PRK11636 137 LMRKIKEAFLAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAPSTFN 210
PbpC COG4953
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
 62-198 2.20e-26

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443980 [Multi-domain]  Cd Length: 773  Bit Score: 107.61  E-value: 2.20e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  62 WVPISKIAQPLVQAVIASEDNLFMEHNGFDVEQIqkARAEAE---KGKRVRGASTISQQTAKnvFLWPGK-SYLRKGIEV 137
Cdd:COG4953   67 PVPLDEVSPRYLQALLAYEDRRFYYHPGVNPLAL--LRAAWQnlrSGRIVSGGSTLTMQVAR--LLEPRPrTLSGKLRQI 142

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 149935607 138 YFTFLIEWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAAtLPN 198
Cdd:COG4953  143 LRALQLERRYSKDEILELYLNLAPYGGNIEGVEAASLAYFGKPPSRLSLAEAALLAV-LPQ 202
mrcB PRK09506
bifunctional glycosyl transferase/transpeptidase; Reviewed
 62-199 9.42e-19

bifunctional glycosyl transferase/transpeptidase; Reviewed


Pssm-ID: 236544 [Multi-domain]  Cd Length: 830  Bit Score: 85.59  E-value: 9.42e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  62 WVPISKIAQPLVQAVIASEDNLFMEHNGFDVEQIQKA-RAEAEKGKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVYFT 140
Cdd:PRK09506 213 FVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAvLANLTAGRTVQGGSTLTQQLVKNLFLSNERSLWRKANEAYMA 292

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 149935607 141 FLIEWIWGKERIMEVYLNSIEMGEG----IYGAEAVAEAHFGKHAYQLTKSEAALI-----AATLPNP 199
Cdd:PRK09506 293 LIMDARYSKDRILELYLNEVYLGQSgddqIRGFPLASLYYFGRPVEELSLDQQALLvgmvkGASLYNP 360
PRK13481 PRK13481
glycosyltransferase; Provisional
 18-203 1.33e-18

glycosyltransferase; Provisional


Pssm-ID: 184078 [Multi-domain]  Cd Length: 232  Bit Score: 82.16  E-value: 1.33e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  18 IFLFVSSILAVMVYKFVPVYYtplmFIRMYEQHQDGKKMKLDHTWVPISKIAQPLVQAVIASEDNLFMEHNGFDVEQIQK 97
Cdd:PRK13481   7 ILLKILLTILIIIALFIGIMY----FLSTRDNVDELRKIENKSSFVSADNMPEYVKGAFISMEDERFYKHHGFDLKGTTR 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  98 ARAEAEKGKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVYFTFLIEWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHF 177
Cdd:PRK13481  83 ALFSTISDRDVQGGSTITQQVVKNYFYDNERSFTRKVKELFVAHRVEKQYSKNEILSFYLNNIYFGDNQYTLEGAANHYF 162

                        170       180       190
                 ....*....|....*....|....*....|...
gi 149935607 178 G-------KHAYQLTKSEAALIAATLPNPRKFN 203
Cdd:PRK13481 163 GttvnknsTTMSHITVLQSAILASKVNAPSVYN 195
PRK14850 PRK14850
penicillin-binding protein 1b; Provisional
 62-224 1.19e-17

penicillin-binding protein 1b; Provisional


Pssm-ID: 237835 [Multi-domain]  Cd Length: 764  Bit Score: 82.20  E-value: 1.19e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  62 WVPISKIAQPLVQAVIASEDNLFMEHNGFDVEQIQKA-RAEAEKGKRVRGASTISQQTAKNVFLWPGKSYLRKGIEVYFT 140
Cdd:PRK14850 159 FIPRNQYPEMLIKTLLAIEDKYFYEHDGIHLSSIGRAfLVNLMSGHTIQGGSTLTQQLVKNLFLTNTRSLWRKINEIYMA 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607 141 FLIEWIWGKERIMEVYLNSIEMG----EGIYGAEAVAEAHFGKHAYQLTKSEAALIAATLPNPRKFNSAKPSPYMLKRQA 216
Cdd:PRK14850 239 LILDRFYSKDRILELYLNEVYLGqdgnEQIRGFPLASIYYFGRPINELNLDQYALLVGMVKGASLYNPWTNPNLTLKRRN 318


                 ....*...
gi 149935607 217 KIISLMGK 224
Cdd:PRK14850 319 LVLFLLYK 326
PRK11240 PRK11240
penicillin-binding protein 1C; Provisional
 2-197 7.75e-12

penicillin-binding protein 1C; Provisional


Pssm-ID: 183049 [Multi-domain]  Cd Length: 772  Bit Score: 65.11  E-value: 7.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607   2 VAPLVKRIWIWCRNLLIFLFVSSILAVMVYkfvpvyytPLmfiRMYEQH-------QDGKKM----KLDHTW---VPISK 67
Cdd:PRK11240   1 RLLTKRGRWLWLAAAPLLLFLALWLADKLW--------PL---PLHEVNparvvvaEDGTPLwrfaDADGIWrypVTIED 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149935607  68 IAQPLVQAVIASEDNLFMEHNGfdVEQIQKARA---EAEKGKRVRGASTISQQTAKnvFLWP-GKSYLRKGIEVYFTFLI 143
Cdd:PRK11240  70 VSPRYLEALINYEDRWFWKHPG--VNPFSVARAawqDLTSGRVISGGSTLTMQVAR--LLDPhPRTFGGKIRQLWRALQL 145

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 149935607 144 EWIWGKERIMEVYLNSIEMGEGIYGAEAVAEAHFGKHAYQLTKSEAALIAAtLP 197
Cdd:PRK11240 146 EWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYAEAALLAV-LP 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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