|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
4-505 |
0e+00 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 812.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 4 DQIERLPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKR-GEPGVFVTFEETPDALRRNMLGFGWDIA 82
Cdd:PRK09302 8 PGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRfDEPGVFVTFEESPEDIIRNVASFGWDLQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 83 RWEAEGKWAFVDVSPQPDEeIVELGSYDLGALLARIEHAVRSIGAVRLSLDSLGAIFTRLSDTRVVRNELLRIVSTLRRL 162
Cdd:PRK09302 88 KLIDEGKLFILDASPDPSE-QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 163 EVTAVLTAERTQEYGEIARYGVEEFVSDDVVILRNVLEDEKRRRTVEILKFRGTSHQKGSFPFTvIPGEGIHVIPLSAIE 242
Cdd:PRK09302 167 GVTAVITGERGDEYGPLTRYGVEEFVSDCVIILRNRLEGEKRTRTLRILKYRGTTHGKNEYPFT-ITEDGISVLPLTAMR 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 243 LKQRSSNVRITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGI 322
Cdd:PRK09302 246 LTQRSSNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGI 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 323 DFEQMERDGLLRVICNYPEVTSLEDQLIFMKAEIDRFRPQRVAVDSLSALERVATIKGFREFVIGLTSFIKHQEMAGLYT 402
Cdd:PRK09302 326 DLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLKSEEITGLFT 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 403 ATTPTLLGGSSVTEAHISTITDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFTIDSRGMHIGRPFRNISGILSGQ 482
Cdd:PRK09302 406 NLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALYVLKMRGSWHSNQIREFVITDKGIHIKDPFRGFEGILSGS 485
|
490 500
....*....|....*....|....
gi 1498198615 483 FTHIAPSEIDR-LSAMFRDEESSE 505
Cdd:PRK09302 486 PRRAQEAEERReLSRRFEEVERKQ 509
|
|
| circ_KaiC |
TIGR02655 |
circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, ... |
7-490 |
0e+00 |
|
circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. [Cellular processes, Other]
Pssm-ID: 131703 [Multi-domain] Cd Length: 484 Bit Score: 597.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 7 ERLPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKR-GEPGVFVTFEETPDALRRNMLGFGWDIARWE 85
Cdd:TIGR02655 1 AKIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHfDEPGVFVTFEESPQDIIKNARSFGWDLQKLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 86 AEGKWAFVDVSPQPD-EEIVelGSYDLGALLARIEHAVRSIGAVRLSLDSLGAIFTRLSDTRVVRNELLRIVSTLRRLEV 164
Cdd:TIGR02655 81 DEGKLFILDASPDPEgQDVV--GGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 165 TAVLTAERTQEYGEIARYGVEEFVSDDVVILRNVLEDEKRRRTVEILKFRGTSHQKGSFPFTvIPGEGIHVIPLSAIELK 244
Cdd:TIGR02655 159 TTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFT-ITDHGINIFPLGAMRLT 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 245 QRSSNVRITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGIDF 324
Cdd:TIGR02655 238 QRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDF 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 325 EQMERDGLLRVICNYPEVTSLEDQLIFMKAEIDRFRPQRVAVDSLSALERVATIKGFREFVIGLTSFIKHQEMAGLYTAT 404
Cdd:TIGR02655 318 EEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 405 TPTLLGGSSVTEAHISTITDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFTIDSRGMHIGRPFRNISGILSGQFT 484
Cdd:TIGR02655 398 SDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREFMISDKGPEIKDSFRNFERIISGSPT 477
|
....*.
gi 1498198615 485 HIAPSE 490
Cdd:TIGR02655 478 RVTVDE 483
|
|
| KaiC-N |
cd19485 |
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ... |
9-236 |
3.75e-127 |
|
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410893 [Multi-domain] Cd Length: 226 Bit Score: 369.77 E-value: 3.75e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 9 LPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIK-RGEPGVFVTFEETPDALRRNMLGFGWDIARWEAE 87
Cdd:cd19485 1 LPTGIEGFDDITHGGLPKGRPTLICGTAGTGKTLFAAQFLVNGIKeFGEPGVFVTFEESPEDIIKNMASFGWDLPKLVAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 88 GKWAFVDVSPQPDEEIVeLGSYDLGALLARIEHAVRSIGAVRLSLDSLGAIFTRLSDTRVVRNELLRIVSTLRRLEVTAV 167
Cdd:cd19485 81 GKLLILDASPEPSEEEV-TGEYDLEALLIRIEYAIRKIGAKRVSLDSLEAVFSGLSDSAVVRAELLRLFAWLKQKGVTAI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1498198615 168 LTAERTqEYGEIARYGVEEFVSDDVVILRNVLEDEKRRRTVEILKFRGTSHQKGSFPFTVIPgEGIHVI 236
Cdd:cd19485 160 MTGERG-EDGPLTRYGVEEYVSDCVVILRNVLEGERRRRTLEILKYRGSSHGKGEYPFTITE-NGISIL 226
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
252-469 |
8.31e-123 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 358.18 E-value: 8.31e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 252 ITSGNAELDRMC-GGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGIDFEQMERD 330
Cdd:cd19484 1 ISTGIPRLDAMLgGGGFFRGSSILVSGATGTGKTLLAASFADAACRRGERCLYFAFEESPAQLIRNAKSIGIDLEQMERK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 331 GLLRVICNYPEVTSLEDQLIFMKAEIDRFRPQRVAVDSLSALERVATIKGFREFVIGLTSFIKHQEMAGLYTATTPTlLG 410
Cdd:cd19484 81 GLLKIICARPELYGLEDHLIIIKSEINEFKPSRVIVDPLSALARGGSLNEVKEFVIRLIDYLKSQEITGLFTNLTPD-GG 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1498198615 411 GSSVTEAHISTITDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFTIDSRGMHIG 469
Cdd:cd19484 160 SLEITEAGISSLTDTWILLRYVEINGERNRGLYVLKMRGMAHSNQIREFSISDKGIDIG 218
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
9-238 |
1.05e-83 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 258.71 E-value: 1.05e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 9 LPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKR-GEPGVFVTFEETPDALRRNMLGFGWDIARWEAE 87
Cdd:pfam06745 1 VKTGIPGLDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLYNGALKyGEPGVFVTLEEPPEDLRENARSFGWDLEKLEEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 88 GKWAFVDVSPQPDEEIVELGSYDLGALLARIEHAVRSIGAVRLSLDSLGAIFTRLsDTRVVRNELLRIVSTLRRLEVTAV 167
Cdd:pfam06745 81 GKLAIIDASTSGIGIAEVEDRFDLEELIERLREAIREIGAKRVVIDSITTLFYLL-KPAVAREILRRLKRVLKGLGVTAI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1498198615 168 LTAERTQEYGEIARYGVEEFVSDDVVILRNVLEDEKRRRTVEILKFRGTSHQKGSFPFTVIPgEGIHVIPL 238
Cdd:pfam06745 160 FTSEKPSGEGGIGGYGVEEFIVDGVIRLDLKEIEEERVRTIEIVKMRGTPHSMKRYPFEITD-NGIVVYPP 229
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
251-469 |
3.53e-71 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 225.95 E-value: 3.53e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 251 RITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGIDFEQMERD 330
Cdd:COG0467 1 RVPTGIPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYVSFEESPEQLLRRAESLGLDLEEYIES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 331 GLLRVICNYPE--VTSLEDQLIFMKAEIDRFRPQRVAVDSLSALER-VATIKGFREFVIGLTSFIKHQEMAGLYTATTPT 407
Cdd:COG0467 81 GLLRIIDLSPEelGLDLEELLARLREAVEEFGAKRVVIDSLSGLLLaLPDPERLREFLHRLLRYLKKRGVTTLLTSETGG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1498198615 408 llGGSSVTEAHISTITDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFTIDSRGMHIG 469
Cdd:COG0467 161 --LEDEATEGGLSYLADGVILLRYVELGGELRRALSVLKMRGSAHDRTIREFEITDGGIEVG 220
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
8-237 |
3.30e-65 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 210.54 E-value: 3.30e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 8 RLPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWDIARWEAE 87
Cdd:COG0467 1 RVPTGIPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYVSFEESPEQLLRRAESLGLDLEEYIES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 88 GKWAFVDVSPqpdeeivELGSYDLGALLARIEHAVRSIGAVRLSLDSLGAIFTRLSDTRVVRNELLRIVSTLRRLEVTAV 167
Cdd:COG0467 81 GLLRIIDLSP-------EELGLDLEELLARLREAVEEFGAKRVVIDSLSGLLLALPDPERLREFLHRLLRYLKKRGVTTL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 168 LTAErTQEYGEIARYGVEEFVSDDVVILRNVLEDEKRRRTVEILKFRGTSHQKGSFPFTVIPGeGIHVIP 237
Cdd:COG0467 154 LTSE-TGGLEDEATEGGLSYLADGVILLRYVELGGELRRALSVLKMRGSAHDRTIREFEITDG-GIEVGE 221
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
9-236 |
1.62e-61 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 200.95 E-value: 1.62e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 9 LPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWDIARWEAEG 88
Cdd:cd01124 1 VKTGIPGLDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLYAGAKNGEPGLFFTFEESPERLLRNAKSFGWDFDEMEDEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 89 KWAFVDVSPqpdeeiVELGSYDLGALLARIEHAVRSIGAVRLSLDSLGAIFTRLSDTRVVRNELLRIVSTLRRLEVTAVL 168
Cdd:cd01124 81 KLIIVDAPP------TEAGRFSLDELLSRILSIIKSFKAKRVVIDSLSGLRRAKEDQMRARRIVIALLNELRAAGVTTIF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1498198615 169 TAERTQ-EYGEIARYGVEEFVSDDVVILRNVLEDEKRRRTVEILKFRGTSHQKGSFPFTvIPGEGIHVI 236
Cdd:cd01124 155 TSEMRSfLSSESAGGGDVSFIVDGVILLRYVEIEGELRRTIRVLKMRGTGHDTGTHPFE-ITDKGIVVF 222
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
252-466 |
2.96e-56 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 187.09 E-value: 2.96e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 252 ITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGIDFEQMERDG 331
Cdd:cd01124 1 VKTGIPGLDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLYAGAKNGEPGLFFTFEESPERLLRNAKSFGWDFDEMEDEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 332 LLRVICNYPEVT---SLEDQLIFMKAEIDRFRPQRVAVDSLSALER-VATIKGFREFVIGLTSFIKHQEMAGLYTATTPT 407
Cdd:cd01124 81 KLIIVDAPPTEAgrfSLDELLSRILSIIKSFKAKRVVIDSLSGLRRaKEDQMRARRIVIALLNELRAAGVTTIFTSEMRS 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1498198615 408 LLGGSSVTEAHISTITDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFTIDSRGM 466
Cdd:cd01124 161 FLSSESAGGGDVSFIVDGVILLRYVEIEGELRRTIRVLKMRGTGHDTGTHPFEITDKGI 219
|
|
| KaiC-like_C |
cd19487 |
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
252-469 |
7.95e-44 |
|
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410895 [Multi-domain] Cd Length: 219 Bit Score: 154.38 E-value: 7.95e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 252 ITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGIDFEQMERDG 331
Cdd:cd19487 1 VSSGVPELDELLGGGLERGTSTLLIGPAGVGKSTLALQFAKAAAARGERSVLFSFDESIGTLFERSEALGIDLRAMVEKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 332 LLRVICNYPEVTSLEDQLIFMKAEIDRFRPQRVAVDS----LSAL--ERVATIKgfrefVIGLTSFIKHQEMAGLYTATT 405
Cdd:cd19487 81 LLSIEQIDPAELSPGEFAQRVRTSVEQEDARVVVIDSlngyLNAMpdERFLILQ-----MHELLSYLNNQGVTTLLIVAQ 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1498198615 406 PTLLGGSSVTEAHISTITDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFTIDSRGMHIG 469
Cdd:cd19487 156 HGLLGGDMGTPVDISYLADTVVLLRYFEAEGEVRKAISVLKKRTGDHERTIREFRITRSGLKVG 219
|
|
| PRK04328 |
PRK04328 |
hypothetical protein; Provisional |
6-237 |
6.86e-39 |
|
hypothetical protein; Provisional
Pssm-ID: 235281 Cd Length: 249 Bit Score: 142.14 E-value: 6.86e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 6 IERLPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWDIARWE 85
Cdd:PRK04328 2 VKRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 86 AEGKWAFVD---------------VSPQPDeeivelgsyDLGALLARIEHAVRSIGAVRLSLDSLGAIFtrLSDTRVVRN 150
Cdd:PRK04328 82 EEGKFAIVDaftggigsaakrekyVVKDPD---------DVRELIDVLRQAIKDIGAKRVVIDSVSTLY--LTKPAMARS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 151 ELLRIVSTLRRLEVTAVLTAERTQEYGEIARYGVEEFVSDdvvILRNVLE--DEKRRRTVEILKFRGTSHQKGSFPFTvI 228
Cdd:PRK04328 151 IVMQLKRVLSGLGCTAIFVSQVSVGERGFGGPGVEHAVDG---IIRLDLDeiDGELKRSLIVWKMRGTKHSMRRHPFE-I 226
|
....*....
gi 1498198615 229 PGEGIHVIP 237
Cdd:PRK04328 227 TDKGIVVYP 235
|
|
| KaiC_arch |
cd19486 |
KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC ... |
11-235 |
2.19e-34 |
|
KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410894 Cd Length: 230 Bit Score: 129.13 E-value: 2.19e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 11 TGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWDIARWEAEGKW 90
Cdd:cd19486 3 TGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLKEGEPGVFVALEEHPVQVRRNMEQFGWDVREYEREGKF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 91 AFVDVSPQPDEEIVELGSY------DLGALLARIEHAVRSIGAVRLSLDSLGAIFtrLSDTRVVRNELLRIVSTLRRLEV 164
Cdd:cd19486 83 AIVDAFTGGIGEAAEREKYvvkdpdDVRELIDVLRQAIRDIGAKRVVIDSVTTLY--ITKPAMARRIVMQLKRVLSGLGC 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1498198615 165 TAVLTAERTQEYGEIARYGVEEFVsdDVVILRNVLEDEKR-RRTVEILKFRGTSHQKGSFPFTvIPGEGIHV 235
Cdd:cd19486 161 TSIFVSQVSVGERGFGGPGVEHAV--DGIIRLDLDEVDGElKRSLIVWKMRGTKHSMRRHPFE-ITDKGIIV 229
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
259-469 |
1.93e-30 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 118.50 E-value: 1.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 259 LDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAG-VRQQERSLLFAFEESRDQLFRNAIGWGIDFEQMERDGLLRVI- 336
Cdd:pfam06745 8 LDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLYNGaLKYGEPGVFVTLEEPPEDLRENARSFGWDLEKLEEEGKLAIId 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 337 -----CNYPEVT---SLEDQLIFMKAEIDRFRPQRVAVDSLSALERVATIKGFREFVIGLTSFIKhqemaGLYTatTPTL 408
Cdd:pfam06745 88 astsgIGIAEVEdrfDLEELIERLREAIREIGAKRVVIDSITTLFYLLKPAVAREILRRLKRVLK-----GLGV--TAIF 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1498198615 409 LGGSSVTEAHIST------ITDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFTIDSRGMHIG 469
Cdd:pfam06745 161 TSEKPSGEGGIGGygveefIVDGVIRLDLKEIEEERVRTIEIVKMRGTPHSMKRYPFEITDNGIVVY 227
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
9-236 |
9.92e-30 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 115.89 E-value: 9.92e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 9 LPTGITGFDHIANG-GLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWDIARWEAE 87
Cdd:cd19484 1 ISTGIPRLDAMLGGgGFFRGSSILVSGATGTGKTLLAASFADAACRRGERCLYFAFEESPAQLIRNAKSIGIDLEQMERK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 88 GKWAFVDVSPQpdeeivelgSYDLGALLARIEHAVRSIGAVRLSLDSLGAiFTRLSDTRVVRNELLRIVSTLRRLEVTAV 167
Cdd:cd19484 81 GLLKIICARPE---------LYGLEDHLIIIKSEINEFKPSRVIVDPLSA-LARGGSLNEVKEFVIRLIDYLKSQEITGL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 168 LTAERTQEYG-EIARYGVEEfVSDDVVILRNVLEDEKRRRTVEILKFRGTSHQKGSFPFtVIPGEGIHVI 236
Cdd:cd19484 151 FTNLTPDGGSlEITEAGISS-LTDTWILLRYVEINGERNRGLYVLKMRGMAHSNQIREF-SISDKGIDIG 218
|
|
| KaiC-like_N |
cd19488 |
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
252-468 |
5.01e-26 |
|
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410896 [Multi-domain] Cd Length: 225 Bit Score: 105.89 E-value: 5.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 252 ITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNA--IGWGID----FE 325
Cdd:cd19488 1 ISTGIPGLDDILRGGLPPRRLYLVEGAPGTGKTTLALQFLLEGAANGETGLYITLSETEQELRAVAlsHGWSLDgihiFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 326 QMERDGLLR----VICNYPEVTSLED--QLIFmkAEIDRFRPQRVAVDSLSALERVA--TIKgFREFVIGLTSFIKHQEM 397
Cdd:cd19488 81 LSPSESALDaaqqYTILHPSELELSEttRLIF--ERVERLKPSRVVIDSLSELRLLAqdSLR-YRRQILALKQFFAGRNT 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1498198615 398 AGLYTATTPtllggSSVTEAHISTITDSIILLRYVEL-FGEMRRGLTVLKMRGSGHDKDIREFTIDSRGMHI 468
Cdd:cd19488 158 TVLLLDDLT-----SDAADLDLHSIAHGVIRLEQLESdYGAARRRLRVSKMRGSSFRGGYHDFRITRGGLQV 224
|
|
| KaiC-like_N |
cd19488 |
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
11-235 |
7.77e-24 |
|
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410896 [Multi-domain] Cd Length: 225 Bit Score: 99.73 E-value: 7.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 11 TGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWDIARWEAEgkw 90
Cdd:cd19488 3 TGIPGLDDILRGGLPPRRLYLVEGAPGTGKTTLALQFLLEGAANGETGLYITLSETEQELRAVALSHGWSLDGIHIF--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 91 afvDVSP-----QPDEEIVELGSYD--LGALLARIEHAVRSIGAVRLSLDSLGAIFTRLSDTRVVRNELLRIVSTLRRLE 163
Cdd:cd19488 80 ---ELSPsesalDAAQQYTILHPSEleLSETTRLIFERVERLKPSRVVIDSLSELRLLAQDSLRYRRQILALKQFFAGRN 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1498198615 164 VTAVLTAERTQEYGEIARYGveefVSDDVVILRNVLED-EKRRRTVEILKFRGTSHQKGSFPFTVIPGeGIHV 235
Cdd:cd19488 157 TTVLLLDDLTSDAADLDLHS----IAHGVIRLEQLESDyGAARRRLRVSKMRGSSFRGGYHDFRITRG-GLQV 224
|
|
| KaiC-N |
cd19485 |
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ... |
259-468 |
7.55e-19 |
|
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410893 [Multi-domain] Cd Length: 226 Bit Score: 85.50 E-value: 7.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 259 LDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLF-AFEESRDQLFRNAIGWGIDFEQMERDGLLRVIC 337
Cdd:cd19485 8 FDDITHGGLPKGRPTLICGTAGTGKTLFAAQFLVNGIKEFGEPGVFvTFEESPEDIIKNMASFGWDLPKLVAEGKLLILD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 338 NYPEVTS--------LEDQLIFMKAEIDRFRPQRVAVDSLSAL-ERVATIKGFREFVIGLTSFIKHQEMAGLYTA--TTP 406
Cdd:cd19485 88 ASPEPSEeevtgeydLEALLIRIEYAIRKIGAKRVSLDSLEAVfSGLSDSAVVRAELLRLFAWLKQKGVTAIMTGerGED 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1498198615 407 TLLGGSSVTEahisTITDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFTIDSRGMHI 468
Cdd:cd19485 168 GPLTRYGVEE----YVSDCVVILRNVLEGERRRRTLEILKYRGSSHGKGEYPFTITENGISI 225
|
|
| PRK04328 |
PRK04328 |
hypothetical protein; Provisional |
251-468 |
2.15e-17 |
|
hypothetical protein; Provisional
Pssm-ID: 235281 Cd Length: 249 Bit Score: 81.66 E-value: 2.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 251 RITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGIDFEQMERD 330
Cdd:PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 331 GLLRVICNY---------------PEVTSLEDQLIFMKAEIDRFRPQRVAVDSLSAL---------------ERVatIKG 380
Cdd:PRK04328 84 GKFAIVDAFtggigsaakrekyvvKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLyltkpamarsivmqlKRV--LSG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 381 FrefviGLTSFIKHQemaglyTATTPTLLGGSSVTEAhistiTDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFT 460
Cdd:PRK04328 162 L-----GCTAIFVSQ------VSVGERGFGGPGVEHA-----VDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFE 225
|
....*...
gi 1498198615 461 IDSRGMHI 468
Cdd:PRK04328 226 ITDKGIVV 233
|
|
| KaiC_arch |
cd19486 |
KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC ... |
252-468 |
4.49e-17 |
|
KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410894 Cd Length: 230 Bit Score: 80.21 E-value: 4.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 252 ITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGIDFEQMERDG 331
Cdd:cd19486 1 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLKEGEPGVFVALEEHPVQVRRNMEQFGWDVREYEREG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 332 LLRV-------ICNYPE-----VTSLED--QLI-FMKAEIDRFRPQRVAVDSLS-------ALERvATIKGFREFVIGL- 388
Cdd:cd19486 81 KFAIvdaftggIGEAAErekyvVKDPDDvrELIdVLRQAIRDIGAKRVVIDSVTtlyitkpAMAR-RIVMQLKRVLSGLg 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 389 -TSFIKHQemaglyTATTPTLLGGSSVTEAhistiTDSIILLRYVELFGEMRRGLTVLKMRGSGHDKDIREFTIDSRGMH 467
Cdd:cd19486 160 cTSIFVSQ------VSVGERGFGGPGVEHA-----VDGIIRLDLDEVDGELKRSLIVWKMRGTKHSMRRHPFEITDKGII 228
|
.
gi 1498198615 468 I 468
Cdd:cd19486 229 V 229
|
|
| KaiC-like_C |
cd19487 |
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
9-220 |
1.32e-16 |
|
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410895 [Multi-domain] Cd Length: 219 Bit Score: 78.88 E-value: 1.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 9 LPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWDIARWEAEG 88
Cdd:cd19487 1 VSSGVPELDELLGGGLERGTSTLLIGPAGVGKSTLALQFAKAAAARGERSVLFSFDESIGTLFERSEALGIDLRAMVEKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 89 KWAFVDVSPqpdeeivelGSYDLGALLARIEHAVRSIGAVRLSLDSLGAIFTRLSDTRVVRNELLRIVSTLRRLEVTAVL 168
Cdd:cd19487 81 LLSIEQIDP---------AELSPGEFAQRVRTSVEQEDARVVVIDSLNGYLNAMPDERFLILQMHELLSYLNNQGVTTLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1498198615 169 TAERTQEYGEIARYGVE-EFVSDDVVILRnVLEDEKR-RRTVEILKFRGTSHQK 220
Cdd:cd19487 152 IVAQHGLLGGDMGTPVDiSYLADTVVLLR-YFEAEGEvRKAISVLKKRTGDHER 204
|
|
| FlaH |
COG2874 |
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
7-239 |
1.25e-09 |
|
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility];
Pssm-ID: 442121 Cd Length: 230 Bit Score: 58.31 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 7 ERLPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWDIARWEA 86
Cdd:COG2874 1 EIISTGNDELDKRLGGGIPLGSLVLIEGENGTGKSVLSQQFAYGALENGLSVTYISTELTTKEFIKQMKSLSYDISDYLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 87 EGKWAFVDVSPQPDEEIVELGSYDLGALLARIEHAVRSIGAVrlSLDSLGAIFTRLSDTRVvrnelLRIVSTLRRL---E 163
Cdd:COG2874 81 RGRLLFLPVHPLGFEWNSKQRKDLLKRLMKYIASNLWEADVI--IIDSLSALLRNAEESAI-----LDFITFFKNLvdlG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1498198615 164 VTAVLTAErTQEYGEIARYGVEEFVsdDVVI-LRNVLEDEKRRRTVEILKFRGTSHQKGS-FPFTVIPGEGIHVIPLS 239
Cdd:COG2874 154 KTIILTVH-PSALDEDILTRLRSIA--DVYLkLSLASVGGRVVKVLEVVKFRGARGQVGNtISFDVDPGFGIKIEPIS 228
|
|
| PRK06067 |
PRK06067 |
flagellar accessory protein FlaH; Validated |
4-239 |
5.50e-09 |
|
flagellar accessory protein FlaH; Validated
Pssm-ID: 180381 Cd Length: 234 Bit Score: 56.52 E-value: 5.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 4 DQIERLPTGITGFDHIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWDIAR 83
Cdd:PRK06067 2 GKKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 84 WEAegkWAFVDVSPQPDEEiVELGSYDLGALLARIEHAVRSIGAVRLSLDSLgAIFTRLSDTRVVRN---ELLRIVSTLR 160
Cdd:PRK06067 82 FFL---WGYLRIFPLNTEG-FEWNSTLANKLLELIIEFIKSKREDVIIIDSL-TIFATYAEEDDILNfltEAKNLVDLGK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 161 rlevTAVLTaerTQEYG--EIARYGVEEfVSDDVVILRNVLEDEKRRRTVEILKFRGTSHQKG-SFPFTVIPGEGIHVIP 237
Cdd:PRK06067 157 ----TILIT---LHPYAfsEELLSRIRS-ICDVYLKLRAEQIGGRYVKVLEVVKLRGARKTTGnIISFDVDPAFGIKIIP 228
|
..
gi 1498198615 238 LS 239
Cdd:PRK06067 229 LS 230
|
|
| Sms |
COG1066 |
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ... |
220-368 |
6.29e-08 |
|
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair];
Pssm-ID: 440685 [Multi-domain] Cd Length: 453 Bit Score: 55.05 E-value: 6.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 220 KGSFPFTVIPGEGIHVIPLSAIELkqrSSNVRITSGNAELDRMCGGGFFRDSIVLVSGATGTGK-TLM--ATTFMAagvR 296
Cdd:COG1066 42 KKGRAASGAAGRASKPVPLSEVEA---EEEPRISTGIGELDRVLGGGLVPGSVVLIGGEPGIGKsTLLlqVAARLA---K 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1498198615 297 QQERSLLFAFEESRDQLFRNAigwgidfeqmERDGL----LRVICnypEvTSLEDqlIFmkAEIDRFRPQRVAVDS 368
Cdd:COG1066 116 KGGKVLYVSGEESASQIKLRA----------ERLGLlsdnLYLLA---E-TDLEA--IL--ATIEELKPDLLVIDS 173
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
235-368 |
1.20e-07 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 52.92 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 235 VIPLSAIELKQRSsnvRITSGNAELDRMCGGGFFRDSIVLVSGATGTGK-TLMATtfMAAGVRQQERSLLF-AFEESRDQ 312
Cdd:cd01121 50 PLPLSDVEAEEEE---RISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKsTLLLQ--VAARLAQRGGKVLYvSGEESLSQ 124
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1498198615 313 LFRNAIGWGIDfeqmeRDGLLRVicnyPEvTSLEDqlIFmkAEIDRFRPQRVAVDS 368
Cdd:cd01121 125 IKLRAERLGLG-----SDNLYLL----AE-TNLEA--IL--AEIEELKPSLVVIDS 166
|
|
| FlaH |
COG2874 |
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
250-451 |
2.29e-07 |
|
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility];
Pssm-ID: 442121 Cd Length: 230 Bit Score: 51.76 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 250 VRITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGIDFEQMER 329
Cdd:COG2874 1 EIISTGNDELDKRLGGGIPLGSLVLIEGENGTGKSVLSQQFAYGALENGLSVTYISTELTTKEFIKQMKSLSYDISDYLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 330 DGLLRVICNYPEV----TSLEDQLI--FMKAE-IDRFRPQRVAVDSLSALERVATIKGFREFVigltSFIKH---QEMAG 399
Cdd:COG2874 81 RGRLLFLPVHPLGfewnSKQRKDLLkrLMKYIaSNLWEADVIIIDSLSALLRNAEESAILDFI----TFFKNlvdLGKTI 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1498198615 400 LYTaTTPTLLGGSSVTeaHISTITDSIILLRYVELFGEMRRGLTVLKMRGSG 451
Cdd:COG2874 157 ILT-VHPSALDEDILT--RLRSIADVYLKLSLASVGGRVVKVLEVVKFRGAR 205
|
|
| PRK06067 |
PRK06067 |
flagellar accessory protein FlaH; Validated |
252-450 |
9.75e-07 |
|
flagellar accessory protein FlaH; Validated
Pssm-ID: 180381 Cd Length: 234 Bit Score: 49.97 E-value: 9.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 252 ITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATTFMAAGVRQQERSLLFAFEESRDQLFRNAIGWGIDFEQMERDG 331
Cdd:PRK06067 7 ISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 332 LLRVI-CNYPEV----TSLEDQLIFMKAEIDRFRPQRVAVDSLSALERVATIKGFREFVIGLTSFIKHQEMAgLYTATTP 406
Cdd:PRK06067 87 YLRIFpLNTEGFewnsTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTI-LITLHPY 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1498198615 407 TLlggSSVTEAHISTITDSIILLRYVELFGEMRRGLTVLKMRGS 450
Cdd:PRK06067 166 AF---SEELLSRIRSICDVYLKLRAEQIGGRYVKVLEVVKLRGA 206
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
24-139 |
2.75e-05 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 45.06 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 24 LPKGRTTLVSGTAGSAKTVFAAQfLAAGIKRGEP------------GVFVTFEETPDALRRNMLGFGWDIARweaEGKWA 91
Cdd:pfam13481 30 LPAGGLGLLAGAPGTGKTTLALD-LAAAVATGKPwlggprvpeqgkVLYVSAEGPADELRRRLRAAGADLDL---PARLL 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1498198615 92 FVDVSPQPDEEIVELGSYDLGALLARIEHAVRSIGAVRL-SLDSLGAIF 139
Cdd:pfam13481 106 FLSLVESLPLFFLDRGGPLLDADVDALEAALEEVEDPDLvVIDPLARAL 154
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
239-284 |
1.38e-04 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 43.44 E-value: 1.38e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1498198615 239 SAIEL-KQRSSNVRITSGNAELDRMCGGGFFRDSIVLVSGATGTGKT 284
Cdd:pfam08423 5 TATELhQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKT 51
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
239-284 |
8.67e-04 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 41.27 E-value: 8.67e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1498198615 239 SAIELKQRSSNV-RITSGNAELDRMCGGGFFRDSIVLVSGATGTGKT 284
Cdd:TIGR02236 63 TADDVLERRKTIgKITTGSKELDELLGGGIETQAITEVFGEFGSGKT 109
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
239-289 |
1.58e-03 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 40.75 E-value: 1.58e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1498198615 239 SAIE-LKQRSSNVRITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATT 289
Cdd:PTZ00035 86 SATEyLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHT 137
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
5-68 |
4.33e-03 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 38.92 E-value: 4.33e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1498198615 5 QIERLPTGITGFDhIA--NGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPD 68
Cdd:pfam00154 29 DVETISTGSLALD-IAlgIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 93
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
243-284 |
4.46e-03 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 39.33 E-value: 4.46e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1498198615 243 LKQRSSNVRITSGNAELDRMCGGGFFRDSIVLVSGATGTGKT 284
Cdd:PLN03186 96 HAQRQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKT 137
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
243-289 |
4.57e-03 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 39.38 E-value: 4.57e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1498198615 243 LKQRSSNVRITSGNAELDRMCGGGFFRDSIVLVSGATGTGKTLMATT 289
Cdd:PLN03187 99 LLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHT 145
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
5-80 |
9.16e-03 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 37.92 E-value: 9.16e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1498198615 5 QIERLPTGITGFDH-IANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFEETPDALRRNMLGFGWD 80
Cdd:cd00983 1 DVEVIPTGSLSLDIaLGIGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKLGGTAAFIDAEHALDPEYAKKLGVDID 77
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
209-289 |
9.42e-03 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 38.17 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1498198615 209 EILKFRGTSHQKGSfpftVIPGEGIHVIPL---SAIEL-KQRSSNVRITSGNAELDRMCGGGFFRDSIVLVSGATGTGKT 284
Cdd:TIGR02239 35 QLLEIKGISEAKAD----KILAEAAKLVPMgftTATEFhQRRQEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKT 110
|
....*
gi 1498198615 285 LMATT 289
Cdd:TIGR02239 111 QLCHT 115
|
|
| |
