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Conserved domains on  [gi|1495977159|gb|AYN72421|]
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homeodomain leucine zipper protein class 1 [Taeniatherum caput-medusae]

Protein Classification

homeobox domain-containing protein( domain architecture ID 10441114)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH:  1.10.10.60
Gene Ontology:  GO:0003677
PubMed:  21557080|26464018|27768937|1357790
SCOP:  4000291

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
58-111 9.48e-17

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 71.38  E-value: 9.48e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1495977159  58 KKRR--LTDEQAEMLELSFQEERKLETGRKVYLATEIGLDPKQVAVWFQNRRARHK 111
Cdd:pfam00046   1 RRKRttFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
58-111 9.48e-17

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 71.38  E-value: 9.48e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1495977159  58 KKRR--LTDEQAEMLELSFQEERKLETGRKVYLATEIGLDPKQVAVWFQNRRARHK 111
Cdd:pfam00046   1 RRKRttFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 57-111 7.88e-15

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 66.12  E-value: 7.88e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1495977159   57 PKKR-RLTDEQAEMLELSFQEERKLETGRKVYLATEIGLDPKQVAVWFQNRRARHK 111
Cdd:smart00389   2 RRKRtSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 58-113 2.48e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 64.96  E-value: 2.48e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1495977159  58 KKRRLTDEQAEMLELSFQEERKLETGRKVYLATEIGLDPKQVAVWFQNRRARHKSK 113
Cdd:cd00086     3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
50-156 7.15e-11

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 58.60  E-value: 7.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495977159  50 DMDRRGDPKKR-RLTDEQAEMLELSFQEERKLETGRKVYLATEIGLDPKQVAVWFQNRRARHKSKTLEQEFARLK-HAHD 127
Cdd:COG5576    45 QDGSSPPKSKRrRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQRPGeEEAD 124

                          90       100       110
                  ....*....|....*....|....*....|
gi 1495977159 128 AA-ILHKCHLQNEVLRLKERLRATEEEVQR 156
Cdd:COG5576   125 LAkIGSLSTGQISIIETLEFSRTSYEEGGL 154
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
58-111 9.48e-17

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 71.38  E-value: 9.48e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1495977159  58 KKRR--LTDEQAEMLELSFQEERKLETGRKVYLATEIGLDPKQVAVWFQNRRARHK 111
Cdd:pfam00046   1 RRKRttFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 57-111 7.88e-15

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 66.12  E-value: 7.88e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1495977159   57 PKKR-RLTDEQAEMLELSFQEERKLETGRKVYLATEIGLDPKQVAVWFQNRRARHK 111
Cdd:smart00389   2 RRKRtSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 58-113 2.48e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 64.96  E-value: 2.48e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1495977159  58 KKRRLTDEQAEMLELSFQEERKLETGRKVYLATEIGLDPKQVAVWFQNRRARHKSK 113
Cdd:cd00086     3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
50-156 7.15e-11

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 58.60  E-value: 7.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495977159  50 DMDRRGDPKKR-RLTDEQAEMLELSFQEERKLETGRKVYLATEIGLDPKQVAVWFQNRRARHKSKTLEQEFARLK-HAHD 127
Cdd:COG5576    45 QDGSSPPKSKRrRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQRPGeEEAD 124

                          90       100       110
                  ....*....|....*....|....*....|
gi 1495977159 128 AA-ILHKCHLQNEVLRLKERLRATEEEVQR 156
Cdd:COG5576   125 LAkIGSLSTGQISIIETLEFSRTSYEEGGL 154
SHE3 pfam17078
SWI5-dependent HO expression protein 3; SWI5-dependent HO expression protein 3 (She3) is an ...
 58-153 2.64e-03

SWI5-dependent HO expression protein 3; SWI5-dependent HO expression protein 3 (She3) is an RNA-binding protein that binds specific mRNAs, including the mRNA of Ash1, which is invalid in cell-fate determination. She3 acts as an adapter protein that docks the myosin motor Myo4p onto an Ash1-She2p ribonucleoprotein complex. She3 seems to bind to Myo4p and Shep2p via different domains.


Pssm-ID: 293683 [Multi-domain]  Cd Length: 228  Bit Score: 37.80  E-value: 2.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1495977159  58 KKRRLTDEQAEMLELSFQEErkletgrkvylatEIGLDPKQVAVWFQNRRARhkSKTLEQEFARLKHAHDAAI----LHK 133
Cdd:pfam17078  64 KERRLKDLEDQLSELKNSYE-------------ELTESNKQLKKRLENSSAS--ETTLEAELERLQIQYDALVdsqnEYK 128

                          90       100
                  ....*....|....*....|
gi 1495977159 134 CHLQNEVLRLKERLRATEEE 153
Cdd:pfam17078 129 DHYQQEINTLQESLEDLKLE 148
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 85-109 3.99e-03

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 34.03  E-value: 3.99e-03
                          10        20
                  ....*....|....*....|....*
gi 1495977159  85 KVYLATEIGLDPKQVAVWFQNRRAR 109
Cdd:pfam05920  15 KAELAKETGLSRKQISNWFINARRR 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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