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Conserved domains on  [gi|1494649719|gb|RLU23571|]
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hypothetical protein DMN91_003776 [Ooceraea biroi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FKBP_N_2 pfam18023
BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila ...
 4-123 2.46e-33

BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila melanogaster protein BDBT (a FK506-Binding Protein) which stimulates the DBT circadian function. The domain contains the DBT-binding site. The domain is structurally homologous to the peptidyl prolyl isomerase (PPIase) regions of FK506-binding proteins despite low sequence homology. BDBT is structurally related to the immunophilin FKBP51 and it shares a common domain organization consisting of PPIase-like and TPR domains with noncanonical immunophilins such as FKBP38 or FKBPL.


:

Pssm-ID: 375495  Cd Length: 113  Bit Score: 118.30  E-value: 2.46e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719   4 WESTDKSIKKSVLKRGV-FSKKPTERSTCNVIVENV-SVTGASDEDLRGKYHTEillgegEKVVVVGDASAEIDRKVERA 81
Cdd:pfam18023   1 WESADKSISKEVLSFGFqGLEKPTEVSSCIVLVENLqNVTLRKDQGLEKYYIYE------EKEIVIGEADTPIDEYIEIL 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1494649719  82 LQMMNVHERSLVTLALPVVEQGDvggELVTVRFEITLSKCER 123
Cdd:pfam18023  75 LEMMKLGETAECTIATKTGESGT---GDIIIKFELTLIKIEN 113
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
139-263 4.50e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.39  E-value: 4.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719 139 ALRYKERGVELFRDSRIVDAFHEFSRAckilITLepipDPDLKleeqlesdikglrlALYNNMAMCQLSRKNYEHVVSLC 218
Cdd:COG4785    73 AQLYYERGVAYDSLGDYDLAIADFDQA----LEL----DPDLA--------------EAYNNRGLAYLLLGDYDAALEDF 130

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1494649719 219 TKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSNC 263
Cdd:COG4785   131 DRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
 
Name Accession Description Interval E-value
FKBP_N_2 pfam18023
BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila ...
 4-123 2.46e-33

BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila melanogaster protein BDBT (a FK506-Binding Protein) which stimulates the DBT circadian function. The domain contains the DBT-binding site. The domain is structurally homologous to the peptidyl prolyl isomerase (PPIase) regions of FK506-binding proteins despite low sequence homology. BDBT is structurally related to the immunophilin FKBP51 and it shares a common domain organization consisting of PPIase-like and TPR domains with noncanonical immunophilins such as FKBP38 or FKBPL.


Pssm-ID: 375495  Cd Length: 113  Bit Score: 118.30  E-value: 2.46e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719   4 WESTDKSIKKSVLKRGV-FSKKPTERSTCNVIVENV-SVTGASDEDLRGKYHTEillgegEKVVVVGDASAEIDRKVERA 81
Cdd:pfam18023   1 WESADKSISKEVLSFGFqGLEKPTEVSSCIVLVENLqNVTLRKDQGLEKYYIYE------EKEIVIGEADTPIDEYIEIL 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1494649719  82 LQMMNVHERSLVTLALPVVEQGDvggELVTVRFEITLSKCER 123
Cdd:pfam18023  75 LEMMKLGETAECTIATKTGESGT---GDIIIKFELTLIKIEN 113
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
139-263 4.50e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.39  E-value: 4.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719 139 ALRYKERGVELFRDSRIVDAFHEFSRAckilITLepipDPDLKleeqlesdikglrlALYNNMAMCQLSRKNYEHVVSLC 218
Cdd:COG4785    73 AQLYYERGVAYDSLGDYDLAIADFDQA----LEL----DPDLA--------------EAYNNRGLAYLLLGDYDAALEDF 130

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1494649719 219 TKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSNC 263
Cdd:COG4785   131 DRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 131-268 4.31e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.14  E-value: 4.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719 131 SAGEKYQVALRYKERGVELFRDSRIVDAFHEFSRAckilitLEPIPDPdlkleeqlesdikglrlALYNNMAMCQLSRKN 210
Cdd:TIGR00990 119 SEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKA------IECKPDP-----------------VYYSNRAACHNALGD 175

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1494649719 211 YEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSNCAVKEQ 268
Cdd:TIGR00990 176 WEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233
TPR_1 pfam00515
Tetratricopeptide repeat;
229-262 1.10e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 1.10e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1494649719 229 VKALYRRGMAHGSMRDNEKAVADLKVALILEPSN 262
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
FKBP_N_2 pfam18023
BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila ...
 4-123 2.46e-33

BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila melanogaster protein BDBT (a FK506-Binding Protein) which stimulates the DBT circadian function. The domain contains the DBT-binding site. The domain is structurally homologous to the peptidyl prolyl isomerase (PPIase) regions of FK506-binding proteins despite low sequence homology. BDBT is structurally related to the immunophilin FKBP51 and it shares a common domain organization consisting of PPIase-like and TPR domains with noncanonical immunophilins such as FKBP38 or FKBPL.


Pssm-ID: 375495  Cd Length: 113  Bit Score: 118.30  E-value: 2.46e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719   4 WESTDKSIKKSVLKRGV-FSKKPTERSTCNVIVENV-SVTGASDEDLRGKYHTEillgegEKVVVVGDASAEIDRKVERA 81
Cdd:pfam18023   1 WESADKSISKEVLSFGFqGLEKPTEVSSCIVLVENLqNVTLRKDQGLEKYYIYE------EKEIVIGEADTPIDEYIEIL 74

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1494649719  82 LQMMNVHERSLVTLALPVVEQGDvggELVTVRFEITLSKCER 123
Cdd:pfam18023  75 LEMMKLGETAECTIATKTGESGT---GDIIIKFELTLIKIEN 113
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
139-263 4.50e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.39  E-value: 4.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719 139 ALRYKERGVELFRDSRIVDAFHEFSRAckilITLepipDPDLKleeqlesdikglrlALYNNMAMCQLSRKNYEHVVSLC 218
Cdd:COG4785    73 AQLYYERGVAYDSLGDYDLAIADFDQA----LEL----DPDLA--------------EAYNNRGLAYLLLGDYDAALEDF 130

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1494649719 219 TKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSNC 263
Cdd:COG4785   131 DRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
198-262 1.07e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.93  E-value: 1.07e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1494649719 198 YNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSN 262
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD 75
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
198-262 2.84e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.39  E-value: 2.84e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1494649719 198 YNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSN 262
Cdd:COG0457    45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD 109
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
198-262 3.08e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.39  E-value: 3.08e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1494649719 198 YNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSN 262
Cdd:COG0457    79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD 143
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 131-268 4.31e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.14  E-value: 4.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719 131 SAGEKYQVALRYKERGVELFRDSRIVDAFHEFSRAckilitLEPIPDPdlkleeqlesdikglrlALYNNMAMCQLSRKN 210
Cdd:TIGR00990 119 SEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKA------IECKPDP-----------------VYYSNRAACHNALGD 175

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1494649719 211 YEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSNCAVKEQ 268
Cdd:TIGR00990 176 WEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 196-260 4.46e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 4.46e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1494649719 196 ALYNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEP 260
Cdd:COG5010    89 ELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 191-262 8.23e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 8.23e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1494649719 191 KGLRLA-----LYNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSN 262
Cdd:COG4235    42 KALRLDpdnadALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 176-265 9.68e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 9.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719 176 PDPDLKLEEQLESDIKGLRLALYNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVA 255
Cdd:COG5010    35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114

                          90
                  ....*....|
gi 1494649719 256 LILEPSNCAV 265
Cdd:COG5010   115 LALSPDNPNA 124
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
198-261 1.31e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.31e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1494649719 198 YNNMAMCQLSRKNYEHVVSLcTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPS 261
Cdd:COG3063    29 LNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 196-262 8.59e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 8.59e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1494649719 196 ALYNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSN 262
Cdd:COG4783    73 EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 194-262 1.39e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.95  E-value: 1.39e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1494649719 194 RLALYNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSN 262
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE 71
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 197-265 1.95e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.02  E-value: 1.95e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1494649719 197 LYNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSNCAV 265
Cdd:COG2956   146 AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
198-285 2.10e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.92  E-value: 2.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719 198 YNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSNCAVKEQFNNYNSKLH 277
Cdd:COG0457   113 LYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192


                  ....*...
gi 1494649719 278 ESIQRRND 285
Cdd:COG0457   193 AEVLLALL 200
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 181-262 3.09e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 3.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719 181 KLEEQLE---SDIKGLRLalynnMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALI 257
Cdd:COG4235     5 RLRQALAanpNDAEGWLL-----LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79


                  ....*
gi 1494649719 258 LEPSN 262
Cdd:COG4235    80 LDPDN 84
TPR_1 pfam00515
Tetratricopeptide repeat;
229-262 1.10e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 1.10e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1494649719 229 VKALYRRGMAHGSMRDNEKAVADLKVALILEPSN 262
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 196-262 1.11e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.63  E-value: 1.11e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1494649719 196 ALYNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSN 262
Cdd:COG4783    39 EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEH 105
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 182-262 2.89e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 2.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494649719 182 LEEQLESDIKGLRLALynNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPS 261
Cdd:COG2956   167 LEKALKLDPDCARALL--LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244


                  .
gi 1494649719 262 N 262
Cdd:COG2956   245 D 245
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 189-265 6.68e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 38.05  E-value: 6.68e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1494649719 189 DIKGLRLALYNNMAMCQLSRKNYEHVVSLCTKVLDRDRNNVKALYRRGMAHGSMRDNEKAVADLKVALILEPSNCAV 265
Cdd:COG3914   106 ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA 182
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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