NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1494235703|gb|AYM85022|]
View 

NADH dehydrogenase subunit 6 [Petamella prosternalis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 3.29e-39

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 130.70  E-value: 3.29e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703   3 KMMVMALSNVMNINFIKLNHPMSMMMFIILQTFLIGLMMGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFKPSS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703  83 NTMILTTFIWGTIMLMLTIMDKTMFMEFfkntetmnndnLINFQEMTMSLMKLYNNPTFIVTMMMMIYLFLALLAVVKIT 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEMSNFNN-----------NFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1494235703 163 NINQGPIRKMM 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 3.29e-39

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 130.70  E-value: 3.29e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703   3 KMMVMALSNVMNINFIKLNHPMSMMMFIILQTFLIGLMMGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFKPSS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703  83 NTMILTTFIWGTIMLMLTIMDKTMFMEFfkntetmnndnLINFQEMTMSLMKLYNNPTFIVTMMMMIYLFLALLAVVKIT 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEMSNFNN-----------NFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1494235703 163 NINQGPIRKMM 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 3.29e-39

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 130.70  E-value: 3.29e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703   3 KMMVMALSNVMNINFIKLNHPMSMMMFIILQTFLIGLMMGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFKPSS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703  83 NTMILTTFIWGTIMLMLTIMDKTMFMEFfkntetmnndnLINFQEMTMSLMKLYNNPTFIVTMMMMIYLFLALLAVVKIT 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEMSNFNN-----------NFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1494235703 163 NINQGPIRKMM 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-173 3.87e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 52.70  E-value: 3.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703   1 MVKMMVMALSNVMNINFIKLNHPMSMMMFIILQTFLIGLMMgTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFKP 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLII-TMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703  81 SSNTMILTTFIWGTIMLMLTIMDKTMFMEFFKNTETMNNdnlinfqemtmsLMKLYNNPTFIVTMMMMIYLFLALLAVVK 160
Cdd:MTH00212   80 KKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELN------------VSKILSNNNIPILLFLGLILLIALLMVVK 147

                         170
                  ....*....|...
gi 1494235703 161 ITNINQGPIRKMM 173
Cdd:MTH00212  148 ICQYYKGPLRPFL 160
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 4.50e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 47.19  E-value: 4.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703   1 MVKMMVMALSNVMNINFIKLNHPMSMMMFIILQTFLIGLMMGtLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFKP 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703  81 SSNTMILTTFIWGTIMLMLtimdktMFMEFFKNTETMNNDNLINFQEMTMSLMKLYNNPTFIVTMMMMIYLFLALLAVVK 160
Cdd:MTH00152   80 NFKFVFFSLTLFGFLGLFF------FFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVK 153

                         170
                  ....*....|
gi 1494235703 161 ITNINQGPIR 170
Cdd:MTH00152  154 ICYYEEGSLR 163
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 24-68 4.64e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 35.89  E-value: 4.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235703  24 MSMMMFIILQTFLIGLMM----------------------GTLME---SFwLSYILFLTFLGGMLVLFIY 68
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAvasnpspyfaalglvvvagvgcGVLVGhggSF-LSLVLFLIYLGGMLVVFAY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH