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Conserved domains on  [gi|1494235633|gb|AYM84957|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Abracris sp. OR222]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 1.03e-36

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 124.53  E-value: 1.03e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633   3 KMIIMVFSNGLNINFMKLNHPMSMMLFIILQTILIGLMTGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYPKS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633  83 INMIIMFTMCiiisiififldMTMLIDMFKNTEILSINNTINFQEMSSSLEKLYNKPMFITTMMMMVYLFLALLAVVKIT 162
Cdd:MTH00166   81 KLLILFLLML-----------LLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1494235633 163 NINQGPIRKMS 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 1.03e-36

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 124.53  E-value: 1.03e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633   3 KMIIMVFSNGLNINFMKLNHPMSMMLFIILQTILIGLMTGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYPKS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633  83 INMIIMFTMCiiisiififldMTMLIDMFKNTEILSINNTINFQEMSSSLEKLYNKPMFITTMMMMVYLFLALLAVVKIT 162
Cdd:MTH00166   81 KLLILFLLML-----------LLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1494235633 163 NINQGPIRKMS 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 1.03e-36

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 124.53  E-value: 1.03e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633   3 KMIIMVFSNGLNINFMKLNHPMSMMLFIILQTILIGLMTGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYPKS 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633  83 INMIIMFTMCiiisiififldMTMLIDMFKNTEILSINNTINFQEMSSSLEKLYNKPMFITTMMMMVYLFLALLAVVKIT 162
Cdd:MTH00166   81 KLLILFLLML-----------LLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                         170
                  ....*....|.
gi 1494235633 163 NINQGPIRKMS 173
Cdd:MTH00166  150 NIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-171 1.71e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 48.46  E-value: 1.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633   1 MLKMIIMVFSNGLNINFMKLNHPMSMMLFIILQTILIGlMTGTLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYP 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSC-LIITMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633  81 KsINMIIMFTMCIIISIIFIFldmtmlidMFKNTEILSINNTINFQEMSSsleKLYNKPMFITTMMMMVYLFLALLAVVK 160
Cdd:MTH00212   80 K-KYFKGFGMILISLNLYLLL--------MTLGSSNFSPMLNLKLELNVS---KILSNNNIPILLFLGLILLIALLMVVK 147

                         170
                  ....*....|.
gi 1494235633 161 ITNINQGPIRK 171
Cdd:MTH00212  148 ICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 1.52e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 45.65  E-value: 1.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633   1 MLKMIIMVFSNGLNINFMKLNHPMSMMLFIILQTILIGLMTGtLMESFWLSYILFLTFLGGMLVLFIYITSIASNEMFYp 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFG- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1494235633  81 ksinmiIMFTMCIIISIIFIFLDMTMLIDMFKNTEILSINNTINFQEMSSSL-EKLYNKPMFITTMMMMVYLFLALLAVV 159
Cdd:MTH00152   79 ------SNFKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFgGGLYSSSGWSIFVFLAVLLLIVMVSVV 152

                         170
                  ....*....|.
gi 1494235633 160 KITNINQGPIR 170
Cdd:MTH00152  153 KICYYEEGSLR 163
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 47-82 3.79e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 36.27  E-value: 3.79e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1494235633  47 SFwLSYILFLTFLGGMLVLFIYITSIASNEmfYPKS 82
Cdd:MTH00138   49 SF-LSLVLFLIYLGGMLVVFAYSAALAAEP--YPES 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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