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Conserved domains on  [gi|1492923030|ref|WP_121170628|]
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flagellar motor switch protein FliN [Thermovibrio guaymasensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08119 super family cl35643
flagellar motor switch protein; Validated
 31-113 1.07e-28

flagellar motor switch protein; Validated


The actual alignment was detected with superfamily member PRK08119:

Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 106.48  E-value: 1.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1492923030  31 LELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPEERLK 110
Cdd:PRK08119  300 LDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITDIVSQSERIK 379


                  ...
gi 1492923030 111 LLE 113
Cdd:PRK08119  380 SLK 382
 
Name Accession Description Interval E-value
PRK08119 PRK08119
flagellar motor switch protein; Validated
 31-113 1.07e-28

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 106.48  E-value: 1.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1492923030  31 LELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPEERLK 110
Cdd:PRK08119  300 LDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITDIVSQSERIK 379


                  ...
gi 1492923030 111 LLE 113
Cdd:PRK08119  380 SLK 382
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 30-104 7.62e-26

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 94.69  E-value: 7.62e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1492923030  30 KLELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIIT 104
Cdd:COG1886    98 NLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 30-106 2.96e-23

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 85.34  E-value: 2.96e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1492923030  30 KLELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPE 106
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 39-104 4.54e-18

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 71.60  E-value: 4.54e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1492923030  39 LEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIIT 104
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
PRK08119 PRK08119
flagellar motor switch protein; Validated
 31-113 1.07e-28

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 106.48  E-value: 1.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1492923030  31 LELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPEERLK 110
Cdd:PRK08119  300 LDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITDIVSQSERIK 379


                  ...
gi 1492923030 111 LLE 113
Cdd:PRK08119  380 SLK 382
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 30-104 7.62e-26

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 94.69  E-value: 7.62e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1492923030  30 KLELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIIT 104
Cdd:COG1886    98 NLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN PRK07963
flagellar motor switch protein FliN; Validated
 4-112 5.65e-25

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 91.39  E-value: 5.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1492923030   4 WQEALAQQEKSSSEPSESEGEEKCDGK--------LELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPID 75
Cdd:PRK07963   19 WAEALNEQKATSSKSAADAVFQQLGGGdvsgtlqdIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1492923030  76 IKINGKLVAKGKLYVVKDSYGVEIVQIITPEERLKLL 112
Cdd:PRK07963   99 ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 30-106 2.96e-23

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 85.34  E-value: 2.96e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1492923030  30 KLELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPE 106
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
fliN PRK05698
flagellar motor switch protein FliN;
31-112 9.54e-22

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 83.70  E-value: 9.54e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1492923030  31 LELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPEERLK 110
Cdd:PRK05698   73 LDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIK 152


                  ..
gi 1492923030 111 LL 112
Cdd:PRK05698  153 KL 154
fliN PRK08983
flagellar motor switch protein FliN;
30-112 3.94e-18

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 73.63  E-value: 3.94e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1492923030  30 KLELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPEERL 109
Cdd:PRK08983   44 KLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123


                  ...
gi 1492923030 110 KLL 112
Cdd:PRK08983  124 KKL 126
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 39-104 4.54e-18

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 71.60  E-value: 4.54e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1492923030  39 LEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIIT 104
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
PRK08916 PRK08916
flagellar motor switch protein FliN;
31-106 1.16e-17

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 72.09  E-value: 1.16e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1492923030  31 LELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPE 106
Cdd:PRK08916   39 LEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGVTMTEIIKAE 114
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
32-107 2.21e-15

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 69.80  E-value: 2.21e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1492923030  32 ELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPEE 107
Cdd:COG1868   250 EELEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAVKITEIIEEEE 325
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 30-103 4.39e-15

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 69.48  E-value: 4.39e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1492923030  30 KLELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQII 103
Cdd:PRK06782  455 DTSILQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGFFGVKVTKSL 528
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 31-112 6.28e-14

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 65.42  E-value: 6.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1492923030  31 LELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPEERLK 110
Cdd:PRK08432  200 INMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFGIQITEIGTKKERLE 279


                  ..
gi 1492923030 111 LL 112
Cdd:PRK08432  280 QL 281
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 36-102 2.53e-11

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 58.58  E-value: 2.53e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1492923030  36 DIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQI 102
Cdd:TIGR02551 232 QLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRILEL 298
fliM PRK06666
flagellar motor switch protein FliM; Validated
 32-114 3.49e-10

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 55.23  E-value: 3.49e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1492923030  32 ELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPEERLKL 111
Cdd:PRK06666  253 QQVQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIERELNEKN 332


                  ...
gi 1492923030 112 LEE 114
Cdd:PRK06666  333 EEL 335
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
36-99 9.49e-08

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 48.58  E-value: 9.49e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1492923030  36 DIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEI 99
Cdd:PRK06933  236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRV 299
PRK08433 PRK08433
flagellar motor switch protein FliN;
36-103 6.93e-07

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 44.35  E-value: 6.93e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1492923030  36 DIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQII 103
Cdd:PRK08433   31 DIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKNLAIRINEIL 98
PRK06033 PRK06033
flagellar motor switch protein FliN;
34-108 1.24e-04

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 37.82  E-value: 1.24e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1492923030  34 IKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQIITPEER 108
Cdd:PRK06033    4 LDAVSVELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVTRAADMLDR 78
PRK06789 PRK06789
flagellar motor switch protein; Validated
 31-102 8.58e-04

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 35.23  E-value: 8.58e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1492923030  31 LELIKDIPLEVSVEVGSTKLPLEEILNLHSNSVVELDRFVDEPIDIKINGKLVAKGKLYVVKDSYGVEIVQI 102
Cdd:PRK06789    1 MKLQDDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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