NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1491570330|gb|AYJ76952|]
View 

NADH dehydrogenase subunit 2, partial [Prionochilus maculatus maculatus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 2.24e-161

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 454.67  E-value: 2.24e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   1 AKLMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  81 DITQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAILSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 161 GGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTML 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMALLSLLSLFFYLRLAYCTMITLPPHTTNHMKQWHTHKPVNLS 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|..
gi 1491570330 321 VAVLTTLSLILLPIAPLICTIP 342
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 2.24e-161

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 454.67  E-value: 2.24e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   1 AKLMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  81 DITQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAILSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 161 GGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTML 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMALLSLLSLFFYLRLAYCTMITLPPHTTNHMKQWHTHKPVNLS 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|..
gi 1491570330 321 VAVLTTLSLILLPIAPLICTIP 342
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 1.14e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.24  E-value: 1.14e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  19 SNHWITAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQM-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  87 HPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPT------LLTTMAILSAAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 161 GGWMGLNQTQIRKILAFSSIAHLGWMAIII----TYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTA-----WT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1491570330 232 KTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-279 1.31e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.66  E-value: 1.31e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  10 VLGTTITVSSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQMTH 87
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  88 PVS------------CLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMK----FPPLTLLYMTSPSLNP---T 148
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 149 LLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTL--LNFYL--YSMMTAAVF-----LSLNSIK 219
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFavillLSRKGGE 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 220 VVKLSTLMTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMA 279
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAV 410
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-278 1.31e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.31e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  10 VLGTTITVSSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  89 VSCLILT------------SAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMK---FPPLTLLYMTSPS----LNPTL 149
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 150 LTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLN--FYL--YSMMTAAVFLSLNSIKVVK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1491570330 223 ---LSTLMTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIM 278
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 2.24e-161

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 454.67  E-value: 2.24e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   1 AKLMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  81 DITQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAILSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 161 GGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTML 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMALLSLLSLFFYLRLAYCTMITLPPHTTNHMKQWHTHKPVNLS 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|..
gi 1491570330 321 VAVLTTLSLILLPIAPLICTIP 342
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 4-341 1.85e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 376.18  E-value: 1.85e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   4 MFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDIT 83
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  84 QMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAILSAALGGW 163
Cdd:MTH00070   88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 164 MGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTMLLLT 243
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMALLSLLSLFFYLRLAYCTMITLPPHTTNHMKQWHTHKPVNLSVAV 323
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSL 327

                         330
                  ....*....|....*...
gi 1491570330 324 LTTLSLILLPIAPLICTI 341
Cdd:MTH00070  328 TIILSLMLLPITPTILNL 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-341 2.48e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 375.68  E-value: 2.48e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   4 MFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDIT 83
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  84 QMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSlNPTLLTTMAILSAALGGW 163
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 164 MGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTMLLLT 243
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMALLSLLSLFFYLRLAYCTMITLPPHTTNHMKQWHTHKP-VNLSVA 322
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTqLTLPLA 326

                         330
                  ....*....|....*....
gi 1491570330 323 VLTTLSLILLPIAPLICTI 341
Cdd:MTH00135  327 ISTTATLMLLPLTPAILAL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 3-341 1.19e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 331.04  E-value: 1.19e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   3 LMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDI 82
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  83 TQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAILSAALGG 162
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 163 WMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTMLLL 242
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMALLSLLSLFFYLRLAYCTMITLPPhTTNHMK-QWH-THKPVNLS 320
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfENTKPMTL 325

                         330       340
                  ....*....|....*....|.
gi 1491570330 321 VAVLTTLSLILLPIAPLICTI 341
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 3-342 6.68e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 288.41  E-value: 6.68e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   3 LMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDI 82
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  83 TQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAILSAALGG 162
Cdd:MTH00200   87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 163 WMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTMLLL 242
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMALLSLLSLFFYLRLAYCTMITLPPHTTNHMKQWHTHKPVNLSVA 322
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326

                         330       340
                  ....*....|....*....|
gi 1491570330 323 VLTTLSLILLPIAPLICTIP 342
Cdd:MTH00200  327 LLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-263 1.58e-75

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 236.37  E-value: 1.58e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   3 LMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDI 82
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  83 TQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAILSAALGG 162
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 163 WMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTMLLL 242
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260
                  ....*....|....*....|.
gi 1491570330 243 TLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-341 1.86e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.57  E-value: 1.86e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   2 KLMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWhtgqwd 81
Cdd:MTH00160    7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  82 ITQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTspsLNPTLLTTMAILSAALG 161
Cdd:MTH00160   81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 162 GWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTMLL 241
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 242 LTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMALLSLLSLFFYLRLAYcTMITLPPHTTNHMKQWHTHKPvNLSV 321
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF-SLIL 315

                         330       340
                  ....*....|....*....|
gi 1491570330 322 AVLTTLSLILLPIAPLICTI 341
Cdd:MTH00160  316 NFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-271 4.59e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 164.67  E-value: 4.59e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   1 AKLMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW 80
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  81 DITqmthpvscLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNP-TLLTTMAILSAA 159
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 160 LGGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSiKVVKLSTLMTAWTKTPVLNTM 239
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1491570330 240 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 271
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 3-271 3.92e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.55  E-value: 3.92e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   3 LMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSmtnawhTGQWDI 82
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  83 TQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAILSAALGG 162
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 163 WMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTMLLL 242
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260
                  ....*....|....*....|....*....
gi 1491570330 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDM 271
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 4-298 1.77e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 136.73  E-value: 1.77e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   4 MFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTgqwdit 83
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  84 qMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLymTSPSLNPTLLTTMAILSAALGGW 163
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 164 MGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTAWTKTPVLNTMLLLT 243
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1491570330 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMALLSLLSLFFYLRLAYCTMI 298
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 9-263 2.04e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 104.73  E-value: 2.04e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   9 LVLGTTITVSSNHWITAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFS-------------SMTNA 74
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  75 WHTGQWDITQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNptLLTTMA 154
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 155 ILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHP----KLTLLNFYLYSMMTAAVFLSLNSIKVVK--LSTLMT 228
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1491570330 229 AWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 1.14e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.24  E-value: 1.14e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  19 SNHWITAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQM-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  87 HPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPT------LLTTMAILSAAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 161 GGWMGLNQTQIRKILAFSSIAHLGWMAIII----TYHPKLTLLNFYLYSMMTAAVFLSLNSIKVVKLSTLMTA-----WT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRdygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1491570330 232 KTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-279 1.31e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.66  E-value: 1.31e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  10 VLGTTITVSSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAWhTGQWDITQMTH 87
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  88 PVS------------CLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMK----FPPLTLLYMTSPSLNP---T 148
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 149 LLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTL--LNFYL--YSMMTAAVF-----LSLNSIK 219
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFavillLSRKGGE 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 220 VVKLSTLMTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMA 279
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAV 410
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 9-263 4.35e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 102.40  E-value: 4.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   9 LVLGTTITVSSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDI----T 83
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  84 QMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTtmAILSAALGGW 163
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 164 MGLNQTQIRKILAFSSIAHLGW----MAIIITYHPKLTLLNFYLYSMMTAAVF---LSLNSIK--VVKLSTLMTawtKTP 234
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKglIVEVSGLSR---KNP 340

                         250       260
                  ....*....|....*....|....*....
gi 1491570330 235 VLNTMLLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00199  341 VIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-278 2.01e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 100.28  E-value: 2.01e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  10 VLGTTITVSSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHP 88
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  89 VS------------CLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMK---FPPLT-LLYMTSPSLNPT---L 149
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 150 LTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWM--AIIITYHPKLTLLNFYL--YSMMTAAVFLSLNSIK-----V 220
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1491570330 221 VKLSTLMTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIM 278
Cdd:PRK05777  353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIG 410
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-278 1.31e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.31e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  10 VLGTTITVSSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  89 VSCLILT------------SAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMK---FPPLTLLYMTSPS----LNPTL 149
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 150 LTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLN--FYL--YSMMTAAVFLSLNSIKVVK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1491570330 223 ---LSTLMTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIM 278
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-279 3.03e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 82.12  E-value: 3.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   9 LVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHP 88
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  89 VS----------CLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVM---------KFppLTLLYMTSPSLNP-T 148
Cdd:COG0651   196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtkvgvyailRV--LTLLFGADPALFLgT 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 149 LLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLY----SMMTAAVFLSLNSIKVV--- 221
Cdd:COG0651   274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgt 353

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1491570330 222 -KLSTLMTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMA 279
Cdd:COG0651   354 rDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 11-188 3.85e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 82.21  E-value: 3.85e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  11 LGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASTLVLFSSMTNAWHTGQ-- 79
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  80 ------------WDITQMTHPVSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLymTSPSLNP 147
Cdd:MTH00198  279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1491570330 148 TLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAI 188
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 3-259 4.77e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.65  E-value: 4.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   3 LMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASTLVL--FSSM--TNAWHT 77
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  78 GQWDI------TQMTHPVSCLI----LTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTL----LYMTSP 143
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 144 SLNP---TLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAI-IIT------YHPKLTLLNFYLysmmtaavFL 213
Cdd:CHL00049  274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVgdsndgYASMITYMLFYI--------FM 345

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1491570330 214 SLNSIKVVKLSTLMTA----------WTKTPVLNTMLLLTLLSLAGLPPLTGFLPK 259
Cdd:CHL00049  346 NLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 45-188 1.36e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.02  E-value: 1.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  45 HPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW--DI-----TQMTHPVSCLILTS---AISIKLGLVPFHFWFPEV 114
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIaelaaAPLPLTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 115 LQGAPLTTSLILSTVM---------KFPpLTLLYMTSPSLNPTLLTtMAILSAALGGWMGLNQTQIRKILAFSSIAHLGW 185
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                  ...
gi 1491570330 186 MAI 188
Cdd:COG1008   314 VLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-188 1.46e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 61.99  E-value: 1.46e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  46 PRAIEAATKYFLVQAAASTLVLF-SSMTNAWHTGQWD-------ITQMTHPVSCLILT---SAISIKLGLVPFHFWFPEV 114
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQlsaialaLITSPSLGLALALVfviAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 115 LQGAPLTTSLILSTVMKFP----PLTLLYMTSPSLNP---TLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMA 187
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316


                  .
gi 1491570330 188 I 188
Cdd:PRK02504  317 I 317
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-278 6.28e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.31  E-value: 6.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   1 AKLMFVTSLVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQW 80
Cdd:PRK08668   99 YFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTF 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  81 DIT-------QMTHPVSCLILTSAISI----KLGLVPFHFWFPEVLQGAPLTTSLILSTVMK-------------FPPLT 136
Cdd:PRK08668  178 DFAdisqgliNDTSTGFALIVFLFLLAfgvaKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygfllvlyvLPGTK 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 137 LL-----YMTSPSLNpTLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLT----LLNFYLYSMM 207
Cdd:PRK08668  258 LFsefgtYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALF 336

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1491570330 208 TAAVFLSLNSI----KVVKLSTLMTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIM 278
Cdd:PRK08668  337 KGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-278 1.88e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.66  E-value: 1.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  29 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-----SMTNAWHTGqwDITQMTHPVSCL-----ILTSAI 98
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllyGVTGTLNMA--DLAGALAENPTVvtafgFVLLAL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  99 SIKLGLVPFHFWFPEVLQGAPLTTSLILS-TVMK----------FPPLTLLYMTSPSLNpTLLTTMAILSAALGGWMGLN 167
Cdd:PRK08375  213 ALKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKvavyaliriyFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALG 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 168 QTQIRKILAFSSIAHLGWMAIIITYHPKLTLLN--FYL--YSMMTAAVFLSLNSIKV----VKLSTLMTAWTKTPVLNTM 239
Cdd:PRK08375  292 QDDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVtygtRRLSELSGLGRRMPLTAAA 371

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1491570330 240 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIM 278
Cdd:PRK08375  372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-262 2.79e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.10  E-value: 2.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  29 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSmtnAWHTGQWDITQM-------------THPVSCLIL 94
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMaylavkmsenptvVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  95 TSAISIKLGLVPFHFWFPEVLQGAP--LTTSLILSTVMKFPPL--TLLYMTSPSLNPT----LLTTMAILSAALGGWMGL 166
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 167 NQTQIRKILAFSSIAHLGWMAI-----IITYHPKLT-----------LLNFYLYSMMTAAVFLS----LNSIKVVKLSTL 226
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALGDPAMasygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1491570330 227 MTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLI 262
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-190 4.02e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.56  E-value: 4.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  46 PRAIEAATKYFLVQAAASTLVLFSSMTNAW-HTGQWDITQ-MTHPVSC-------LILTSAISIKLGLVPFHFWFPEVLQ 116
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLElLNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 117 GAPLTTSLILSTV---------MKFpPLTLLYMTSPSLNPtLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMA 187
Cdd:TIGR01972 232 EAPTAGSVILAGVllkmgtygfLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309


                  ...
gi 1491570330 188 III 190
Cdd:TIGR01972 310 LGI 312
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 16-188 1.74e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 52.62  E-value: 1.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  16 TVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYF---------------LVQAAASTLVLFSSMTNAW----- 75
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAILWtellk 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  76 HTGQWDITQMTHPVSCLILtsAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYM--------TSPSLNP 147
Cdd:PRK06458  204 HASLLDPTLMKLAFVFLLI--GFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRyyilidaaIGSDFPG 281

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1491570330 148 TLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAI 188
Cdd:PRK06458  282 RLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-263 1.43e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 49.73  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  29 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-----SMTNAWHTGqwDITQMTHP--------VSCLILT 95
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  96 SAISIKLGLVPFHFWFPEVLQGAPLTTSLILS----TVMKFPPLTLLY--------MTSPSLNpTLLTTMAILSAALGGW 163
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIVYdvfkanfvFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 164 MGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYLY----SMMTAAVFLSLNSIK----VVKLSTLMTAWTKTPV 235
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 1491570330 236 LNTMLLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 46-190 5.73e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.89  E-value: 5.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  46 PRAIEAATKYFLVQAAASTLVLFSSMTNAWH----TGQWDITQ-MTHPVSC-------LILTSAISIKLGLVPFHFWFPE 113
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 114 VLQGAPLTTSLILSTVMK--------------FPPLTLLYMtspslnpTLLTTMAILSAALGGWMGLNQTQIRKILAFSS 179
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILLkmgaygllrfslplFPDASHEFA-------PIIITLGVIAIIYGALVALAQTDIKKLIAYSS 309

                         170
                  ....*....|.
gi 1491570330 180 IAHLGWMAIII 190
Cdd:PRK05846  310 ISHMGFVTLGI 320
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 9-190 8.19e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.44  E-value: 8.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   9 LVLGTTITVSSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------STLVLFSSMTNAWHTGQWDI 82
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  83 TQMTHPVSCL----ILTSAISI------KLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPT---- 148
Cdd:PRK08676  191 TELAAHASLLspsvLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1491570330 149 ----LLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIII 190
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 17-186 8.28e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.45  E-value: 8.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  17 VSSNHWITAWAGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTH-------- 87
Cdd:COG1009   128 VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilss 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  88 ----PVSCLILTSAISiKLGLVPFHFWFPEVLQGaPLTTS-LILSTVMK----FppltLLYMTSP--SLNPTLLTTMAIL 156
Cdd:COG1009   208 plltLILLLLLLGAFG-KSAQFPLHFWLPDAMEG-PTPVSaLLHAATMVkagvY----LLARLSPlfALSPVWLTVVAII 281

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1491570330 157 SAA---LGGWMGLNQTQIRKILAFSSIAHLGWM 186
Cdd:COG1009   282 GAItalFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-216 1.34e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 46.65  E-value: 1.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  55 YFLVQAAASTLVLFSSMTNAW-HTGQWDITQMTHP-----VSCLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILST 128
Cdd:PRK08667  166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 129 VM-KFPPLTLLYMTSPSLNP-----TLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFY 202
Cdd:PRK08667  246 VMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLD 325

                         170
                  ....*....|....*.
gi 1491570330 203 LYSMMT--AAVFLSLN 216
Cdd:PRK08667  326 TLALLAlgGALFHSLN 341
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 92-259 2.55e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.07  E-value: 2.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  92 LILTSAISiKLGLVPFHFWFPEVLQgAPLTTSLILST----------VMKFPPLtllYMTSPSLNPTLLTtMAILSAALG 161
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMA-APTPVSAYLHAaamvkagiylVARLAPG---FADVPVWRPTVLV-LGLATMLLG 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 162 GWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPK------LTLLnfYLYSMMTAAVFLSLNSI-------KVVKLSTLmt 228
Cdd:PRK12644  282 GWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIdhstgtrDIRKLSGL-- 357

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1491570330 229 aWTKTPVLNTMLLLTLLSLAGLPPLTGFLPK 259
Cdd:PRK12644  358 -GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
51-186 3.00e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.46  E-value: 3.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  51 AATKYFLVQAAASTLVLFSSMTNAWHTGQWDI---TQMTH--PVSCLILTSA-----ISIKLGLVPFHFWFPEVLQGAPL 120
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAHVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1491570330 121 TTSLILSTVM-KFPPLTLL------YMTSPSLNPTLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWM 186
Cdd:PRK06473  238 PVSVLLAGVLlKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
48-186 3.20e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 45.78  E-value: 3.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  48 AIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHPVSCLILTSAISIKLGLV----------------PFHFWF 111
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 112 PEVLQGAPLTTSLILSTVMKFPPLTLLYMTSP--SLNPTLLTTMAI---LSAALGGWMGLNQTQIRKILAFSSIAHLGWM 186
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 97-193 5.62e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.91  E-value: 5.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  97 AISIKLGLVPFHFWFPEVLQGAPLTTSLILSTV-MKFPPLTLLYMTSP-------SLNPTLLtTMAILSAALGGWMGLNQ 168
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100
                  ....*....|....*....|....*
gi 1491570330 169 TQIRKILAFSSIAHLGWMAIIITYH 193
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLVTH 342
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 88-267 7.29e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 44.56  E-value: 7.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  88 PVSCLILTSAI--SIKLGLvpfHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAI-----LSAAL 160
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 161 GGWMGLNQTQIRKILAFSSIAHLGWMAIIITYHPKLTLLNFYL--YSMMTAAVFLSLNSI---------KVVKLSTLMTA 229
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1491570330 230 wtkTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIqELT 267
Cdd:MTH00032  383 ---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL-ELT 416
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 91-264 1.63e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.53  E-value: 1.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  91 CLILTSAISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPTLLTTMAI-----LSAALGGWMG 165
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 166 LNQTQIRKILAFSSIAHLGWMAIII-TYHPKLTLLNFYLYSMMTAAVFLSLNSI--------KVVKLSTLMTAwtkTPVL 236
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLT 369

                         170       180
                  ....*....|....*....|....*...
gi 1491570330 237 NTMLLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:MTH00020  370 YIFFLIGSLSLMGFPYLTGFYSKDLILE 397
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-336 1.79e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 38.78  E-value: 1.79e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1491570330 291 RLAYCTMITLPPHTTNHMKQWHTHKPVN-LSVAVLTTLSLILLPIAP 336
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNtLLLPTLTTLSILLLPLTP 51
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 10-266 1.86e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 43.24  E-value: 1.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  10 VLGTTITVSSNHWITAWAGLEINTLA---ILPLISKSHHPRAIeaatkyFLVQAAASTLVLFSSMTNAWH-TGQWDITQM 85
Cdd:PRK06459   82 ILGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGTTNFSYL 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  86 THPVSCLILTSAISIKLGLVPFHF--WFPEVLQGAPLTTSLILSTVMK----FPPLTLLYMTSPS-LNPTLLTTMAI--L 156
Cdd:PRK06459  156 PSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTlmgvYGILKMTILTQTIpIGYFGLTILAIgaF 235

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 157 SAALGGWMGLNQTQIRKILAFSSIAHLGWM-----AIIITYHPKLTLLNFYLYSMMTAAVFLSLN------SIKVVKLST 225
Cdd:PRK06459  236 SILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSFAHSVAktglflSSGLQEKQS 315

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1491570330 226 LMTAWTK-TPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQEL 266
Cdd:PRK06459  316 ITYSKKIrNRWIELGLTLLASSLSGLLPNIGGVASWLLLESL 357
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 97-215 2.62e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 42.73  E-value: 2.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  97 AISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVM---------KFpPLTLLYMTSPSLNPtLLTTMAILSAALGGWMGLN 167
Cdd:MTH00217  215 SLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLlklggygfiRF-SWPLLPEASEYFSP-LIQTLSLLAIIYGSLTTCR 292

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1491570330 168 QTQIRKILAFSSIAHLGWMAIIITYHPKLTLLnfylysmmtAAVFLSL 215
Cdd:MTH00217  293 QVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLV---------AAIFLML 331
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 51-190 5.43e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.56  E-value: 5.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  51 AATKYFLVQAAASTLVLFSSMTNAWHTGQ--WDITQMTH---PVSCLILTS-----AISIKLGLVPFHFWFPEVLQGAPL 120
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1491570330 121 TTSLILSTVM-KFPPLTLLYMTSPSLNPT------LLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIII 190
Cdd:PRK12561  218 PVSMILAGVLlKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 44-259 6.39e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 41.74  E-value: 6.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  44 HHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQMTHPVSC--------LILTSAISIKLGLV------PFHF 109
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 110 WFPEVLQGAPLTTSLILSTVMKFPPLTLLYMTSPSLNPT-----LLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLG 184
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 185 WMAIIITY----HPKLTLL--NFYL--YSMMTAAVFLSLNSI-------KVVKLSTLMTawtKTPVLNTMLLLTLLSLAG 249
Cdd:PRK12649  316 YLMTMYGYttyhEPGLGVAaaTFHLlnHATFKACLFLVAGIVaheaatrDIRKLGGLRK---EMPITFIVASIAALAMAG 392

                         250
                  ....*....|
gi 1491570330 250 LPPLTGFLPK 259
Cdd:PRK12649  393 IPPLNGFLSK 402
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-186 6.65e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 41.22  E-value: 6.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   1 AKLMFVTSLVlgtTITVSSNHW---ITAWA--GLEINTLailpLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAW 75
Cdd:PRK08168  104 RALAGVLAAV---HLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYL 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  76 HTGQWDI--------TQMTHP---VSCLILTSAISIKLGLVPFHFWFPEVLQgAPLTTSLILST---------VMKFPPL 135
Cdd:PRK08168  177 EVGSLSLsalwahlaAQGASPslqAAALLLVLAVILKTAQLPVHGWLIQVME-APTPVSALLHAgvvnlggfvLIRFAPL 255

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1491570330 136 TLLymtSPSLNpTLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWM 186
Cdd:PRK08168  256 LEQ---APPAR-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 105-279 7.45e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.44  E-value: 7.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 105 VPFHFWFPEVLQgAPLTTSLIL-STVMKFPPLTLLYMTSPSLNPT-----LLTTMAILSAALGGWMGLNQTQIRKILAFS 178
Cdd:PRK12647  212 FPFHFWLPNAME-APTPVSAYLhSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 179 SIAHLGWMAIIITYHPKLTLLNFYLY----SMMTAAVFLSLNSIK-------VVKLSTLmtaWTKTPVLNTMLLLTLLSL 247
Cdd:PRK12647  291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSM 367

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1491570330 248 AGLPPLTGFLPKWLIIQELTKQDMAPAATIMA 279
Cdd:PRK12647  368 AGLPPLFGFLAKELIYEALLEAPLWSLILTVA 399
PRK12650 PRK12650
DUF4040 family protein;
76-190 7.55e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.57  E-value: 7.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  76 HTGQW-DITQMTHPVSCLILTSAISiKLGLVPFHFWFPEVLQGA-PLTTSLILSTVMKfPPLTLLYMTSPSL--NPT--- 148
Cdd:PRK12650  196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAItPVSAFLHAAAVVK-AGIYLLLRFSPVFhdVAVwnw 273

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1491570330 149 LLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIII 190
Cdd:PRK12650  274 LLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
30-278 7.83e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.17  E-value: 7.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  30 EINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWHTGQWDITQM-----THPVSCLILTSAISIKLGL 104
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIhnallVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 105 V------PFHFWFPEVLQGAPLTTSLILSTVMKFPPLTLL-------YMTS--PSLNpTLLTTMAILSAALGGWMGLNQT 169
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMlvifklfGGLSyfPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 170 QIRKILAFSSIAHLGWMAIIITYHPKLTL-------LNFYLYsmmTAAVFLSLNSI----KVVKLSTLMTAWTKTPVLNT 238
Cdd:PRK06277  289 DYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAF 365

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1491570330 239 MLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIM 278
Cdd:PRK06277  366 MVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIM 405
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 97-193 8.64e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 40.82  E-value: 8.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  97 AISIKLGLVPFHFWFPEVLQGAPLTTSLILSTVM---------KFpPLTLLYMTSPSLNPtLLTTMAILSAALGGWMGLN 167
Cdd:MTH00204  218 SLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILlklggygflRF-SWPLFPAASEYFAP-LIVMLSVIAVIYGSLTTCR 295

                          90       100
                  ....*....|....*....|....*.
gi 1491570330 168 QTQIRKILAFSSIAHLGWMAIIITYH 193
Cdd:MTH00204  296 QVDFKRLIAYSSVAHMGLVPLGLFTH 321
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
49-264 4.63e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.78  E-value: 4.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  49 IEAATKYFLVQAAASTLVL---------FSSMTNAWHTGQWDITQMTHPVSCL--ILTSAISIKLGLVPFhFWFPEVLQG 117
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLlgigllygtFGTLNMAHIAMRLNDMGDTATLTTIalLFLLAFGMKAALFPF-MWLPAAYHT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 118 APLTTSLILSTVMK-------FPPLTLLYMTSPSLNPTLLTTMAILSAALGGWMGLNQTQIRKILAFSSIAHLGWMAIII 190
Cdd:PRK12663  236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGL 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 191 TYHPKLTLLN--FYL-YSMMT-AAVFLSLNSIKVV----KLSTLMTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLI 262
Cdd:PRK12663  316 ALGTPAGINGaiFYLvHDMVVkTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395


                  ..
gi 1491570330 263 IQ 264
Cdd:PRK12663  396 VQ 397
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-279 7.60e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 37.87  E-value: 7.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330   5 FVTSLVLGTTITVSSNhWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMT---NAWHTGQWD 81
Cdd:PRK06589  122 FNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFV 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  82 ----ITQMTHPVSCLILTSAIsIKLGLVPFHFWFPE-VLQGAPLTTSLILSTVMK---FPPLTLLYMTSPSLNPTLLTTM 153
Cdd:PRK06589  201 sgglFSKNQSIILLLMFIYGI-AKTAIFPVHSWLPAaMVAHYPVSALLHAVIVVKtglFCIYKILLYIFGLSYLQRIFAE 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330 154 -------AILSAALGGWMGLNQTQIRKILAFSSIAHLGW--MAIIITYHPKLTLLNFYL--YSMMTAAVFLSLNSIKVVK 222
Cdd:PRK06589  280 fnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLvsHSFAKICLFYSMGSIYSLK 359

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1491570330 223 ----LSTLMTAWTKTPVLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIMA 279
Cdd:PRK06589  360 kedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVM 420
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
51-186 8.16e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.77  E-value: 8.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491570330  51 AATKYFLVQAAASTLVLFSSMTNAWHTGQWD------ITQMTHPVSCLILTSAI----SIKLGLVPFHFWFPEVLQGAPL 120
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1491570330 121 TTSLILSTVM---------KFPpLTLLYMTSPSLNPTLLTTMAIlSAALGGWMGLNQTQIRKILAFSSIAHLGWM 186
Cdd:PRK07363  238 AVAILLGGVLaklgtygllRFG-LQLFPQTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYI 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH