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Conserved domains on  [gi|1490909965|gb|RLE41351|]
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hypothetical protein DRJ23_00070 [Candidatus Acetothermia bacterium]

Protein Classification

respiratory chain complex I subunit 1 family protein( domain architecture ID 10002022)

respiratory chain complex I subunit 1 family protein similar to Escherichia coli formate hydrogenlyase subunit 4 (HycD) and hydrogenase-4 component C (HyfC)

EC:  1.-.-.-
Gene Ontology:  GO:0016491|GO:0022900|GO:1990204
PubMed:  7690854|33957129|32058886|10449365

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-298 6.66e-58

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


:

Pssm-ID: 440415  Cd Length: 303  Bit Score: 188.08  E-value: 6.66e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965   1 MTIGLQIAWMIslpvvMILLVAVVFTGISLKVTARIDRRYGPPIYQPVIDLVKLVSLKTNVSHG--VIFDWGLLVAIAGS 78
Cdd:COG0650     2 MLILLALLQLL-----LALLLAPLLLGIIRKVKARLQGRRGPPILQPYYDLLKLLRKETVVPETasWLFRAAPYVALAAM 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  79 SVALLMIPMGGIH-PLSGSGDLLVILYLMIFASVGLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMMTYHHTT 157
Cdd:COG0650    77 LLAALLVPVLTTGpPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGST 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 158 SLVALVAAQRATGVLGA-LRFPLSAVAAILIMPALQGVRPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTAVILSL 236
Cdd:COG0650   157 SLSDIVAYQAAHGPLLLsPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1490909965 237 MVDLFFGG------ATNLGIFILKMTGLFLFGVLVNAVYPRFRVEQALRYCWRwPTWFALGGLIMAMV 298
Cdd:COG0650   237 FVNLFLPWgialtlLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWT-AFLLALLALLLAVL 303
 
Name Accession Description Interval E-value
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-298 6.66e-58

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 188.08  E-value: 6.66e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965   1 MTIGLQIAWMIslpvvMILLVAVVFTGISLKVTARIDRRYGPPIYQPVIDLVKLVSLKTNVSHG--VIFDWGLLVAIAGS 78
Cdd:COG0650     2 MLILLALLQLL-----LALLLAPLLLGIIRKVKARLQGRRGPPILQPYYDLLKLLRKETVVPETasWLFRAAPYVALAAM 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  79 SVALLMIPMGGIH-PLSGSGDLLVILYLMIFASVGLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMMTYHHTT 157
Cdd:COG0650    77 LLAALLVPVLTTGpPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGST 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 158 SLVALVAAQRATGVLGA-LRFPLSAVAAILIMPALQGVRPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTAVILSL 236
Cdd:COG0650   157 SLSDIVAYQAAHGPLLLsPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1490909965 237 MVDLFFGG------ATNLGIFILKMTGLFLFGVLVNAVYPRFRVEQALRYCWRwPTWFALGGLIMAMV 298
Cdd:COG0650   237 FVNLFLPWgialtlLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWT-AFLLALLALLLAVL 303
NADHdh pfam00146
NADH dehydrogenase;
15-294 1.03e-45

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 156.48  E-value: 1.03e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  15 VVMILLVAVVFTGISLKVTARIDRRYGP------PIYQPVIDLVKLVSLKTNVSHGV---IFDWGLLVAIAGSSVALLMI 85
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPnrvgpfGLLQPFADALKLLFKEDIIPAGAdkfLFLLAPIIAFIPALLAFAVI 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  86 PMGGIHPLSG-SGDLLVILYLMIFASVGLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMMTYHHTTSLVALVA 164
Cdd:pfam00146  86 PFGPGLVLADlNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 165 AQRatGVLGALRFPLSAVAAILIMPALQGVRPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTAVILSLMVDLFFGG 244
Cdd:pfam00146 166 AQA--GGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGG 243

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1490909965 245 ------ATNLGIFILKMTGLFLFGVLVNAVYPRFRVEQALRYCWRWPTWFALGGLI 294
Cdd:pfam00146 244 wlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLL 299
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
9-283 3.52e-25

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 102.58  E-value: 3.52e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965   9 WMISLPVVMILLVAVVFTGISL----KVTARIDRRYGPP------IYQPVIDLVKLVsLKTNV----SHGVIFDWGLLVA 74
Cdd:PRK06076   10 LLILLKAVVILVVVLLCVAFLIwferKVLARMQLRYGPNrvgpfgLLQLVADGIKLL-FKEDIipagADKVLFLLAPVIA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  75 IAGSSVALLMIPMGGIHPLSgsgDLLV-ILYLMIFASV---GLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAM 150
Cdd:PRK06076   89 FIPAFLAWAVIPFGPELVIA---DLNVgILYILAISSLgvyGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 151 MTYHHTTSLVALVAAQRatGVLGALRFPLSAVAAILIMPALQGVRPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHT 230
Cdd:PRK06076  166 VLLAGSLNLSDIVEAQF--LSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINM 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1490909965 231 AVILSLMVDLFFGG--------ATNLGI--FILKMTGLFLFGVLVNAVYPRFRVEQALRYCWR 283
Cdd:PRK06076  244 ILVSALITTLFLGGwlppfplgGGIPGAiwFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWK 306
 
Name Accession Description Interval E-value
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-298 6.66e-58

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 188.08  E-value: 6.66e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965   1 MTIGLQIAWMIslpvvMILLVAVVFTGISLKVTARIDRRYGPPIYQPVIDLVKLVSLKTNVSHG--VIFDWGLLVAIAGS 78
Cdd:COG0650     2 MLILLALLQLL-----LALLLAPLLLGIIRKVKARLQGRRGPPILQPYYDLLKLLRKETVVPETasWLFRAAPYVALAAM 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  79 SVALLMIPMGGIH-PLSGSGDLLVILYLMIFASVGLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMMTYHHTT 157
Cdd:COG0650    77 LLAALLVPVLTTGpPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGST 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 158 SLVALVAAQRATGVLGA-LRFPLSAVAAILIMPALQGVRPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTAVILSL 236
Cdd:COG0650   157 SLSDIVAYQAAHGPLLLsPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1490909965 237 MVDLFFGG------ATNLGIFILKMTGLFLFGVLVNAVYPRFRVEQALRYCWRwPTWFALGGLIMAMV 298
Cdd:COG0650   237 FVNLFLPWgialtlLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWT-AFLLALLALLLAVL 303
NADHdh pfam00146
NADH dehydrogenase;
15-294 1.03e-45

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 156.48  E-value: 1.03e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  15 VVMILLVAVVFTGISLKVTARIDRRYGP------PIYQPVIDLVKLVSLKTNVSHGV---IFDWGLLVAIAGSSVALLMI 85
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPnrvgpfGLLQPFADALKLLFKEDIIPAGAdkfLFLLAPIIAFIPALLAFAVI 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  86 PMGGIHPLSG-SGDLLVILYLMIFASVGLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMMTYHHTTSLVALVA 164
Cdd:pfam00146  86 PFGPGLVLADlNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 165 AQRatGVLGALRFPLSAVAAILIMPALQGVRPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTAVILSLMVDLFFGG 244
Cdd:pfam00146 166 AQA--GGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGG 243

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1490909965 245 ------ATNLGIFILKMTGLFLFGVLVNAVYPRFRVEQALRYCWRWPTWFALGGLI 294
Cdd:pfam00146 244 wlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLL 299
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
9-283 3.52e-25

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 102.58  E-value: 3.52e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965   9 WMISLPVVMILLVAVVFTGISL----KVTARIDRRYGPP------IYQPVIDLVKLVsLKTNV----SHGVIFDWGLLVA 74
Cdd:PRK06076   10 LLILLKAVVILVVVLLCVAFLIwferKVLARMQLRYGPNrvgpfgLLQLVADGIKLL-FKEDIipagADKVLFLLAPVIA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  75 IAGSSVALLMIPMGGIHPLSgsgDLLV-ILYLMIFASV---GLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAM 150
Cdd:PRK06076   89 FIPAFLAWAVIPFGPELVIA---DLNVgILYILAISSLgvyGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 151 MTYHHTTSLVALVAAQRatGVLGALRFPLSAVAAILIMPALQGVRPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHT 230
Cdd:PRK06076  166 VLLAGSLNLSDIVEAQF--LSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINM 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1490909965 231 AVILSLMVDLFFGG--------ATNLGI--FILKMTGLFLFGVLVNAVYPRFRVEQALRYCWR 283
Cdd:PRK06076  244 ILVSALITTLFLGGwlppfplgGGIPGAiwFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWK 306
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 15-283 2.29e-10

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 60.31  E-value: 2.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  15 VVMILLVAVVFTGISLKVTARIDRRYGPPI------YQPVIDLVKLVSLKTNVSHGVIFDWGLLVAIAGSSVALLM-IPM 87
Cdd:MTH00218   12 ILPVLLAVAFLTLLERKVLGYMQLRKGPNVvgpyglLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLwMPL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  88 GGIHPLSGSG-DLLVILYLMIFASVGLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMMTYHHTTSLVALVAAQ 166
Cdd:MTH00218   92 PLPFSLINLNlGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQ 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 167 rATGVLGALRFPLSAVAAILIMPALQGVrPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTAVILSLMVDLFFGGAT 246
Cdd:MTH00218  172 -ETIWLLIPEWPLALMWFISTLAETNRA-PFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGTSL 249

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1490909965 247 NLGIFILKMTGLFLFGVLVNAVYPRFRVEQALRYCWR 283
Cdd:MTH00218  250 TTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWK 286
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 139-298 1.30e-06

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 49.10  E-value: 1.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 139 YEVPFILILLAMMTYHHTTSLVALVAAQrATGVLGALRFPLSAVAAILIMpALQGVRPFDFVTAPQEVASGPMVELGGKY 218
Cdd:MTH00143  143 YEVSMSLILLFPLFLSGSFSFIEISESQ-FSVWLGFLMFPVFLMWFVSCL-AETNRAPFDFAEGESELVSGFNVEYGGGG 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 219 LALMVIEQSLHTAVILSLMVDLFFGGATNLGI-----FILKMTGLFLFGVLVNAVYPRFRVEQALRYCWRWPTWFALGGL 293
Cdd:MTH00143  221 FALLFLAEYANILFMSLLTVVLFFGGSSVLFLlggvvFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSIL 300


                  ....*
gi 1490909965 294 IMAMV 298
Cdd:MTH00143  301 VLFVV 305
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 7-295 2.00e-06

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 48.57  E-value: 2.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965   7 IAWMISLPVVMILLVAVVF-TGISLKVTARIDRRYGPPI------YQPVIDLVKLVSLKTNVSHGVIFDWGLLVAIAGSS 79
Cdd:MTH00054    3 IIIIKILAILVPLLISIAYlTLAERKVLGYIQCRKGPNVvgvyglLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  80 VALL---MIPMGGIHPLSGSGdlLVILYLMIFASV---GLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMMTY 153
Cdd:MTH00054   83 LAFIawgVIPYGEGVVLSDLG--IGILYLFAVSSIsvyAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 154 HHTTSLVALVAAQRATGVLgalrFPLSAVAAILIMPALQGVR--PFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTA 231
Cdd:MTH00054  161 VGSLNLTEIVLAQKNIWFI----FPLFPAAIMFFVSALAETNrvPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHII 236

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1490909965 232 VILSLMVDLFFGGATNLGIFILKMTGLFLFGV----------LVNAVYPRFRVEQALRYCWRWPTWFALGGLIM 295
Cdd:MTH00054  237 LMSTFGVILFLGGWLVISGPTSYFSNFVWFGIkialiiflfiWIRASYPRIRYDQLMALLWKSYLPLSLAFVVL 310
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 15-298 2.60e-06

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 48.05  E-value: 2.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  15 VVMILLVAVVFTGISLKVTARIDRRYGPPI------YQPVIDLVKLV---SLKTNVSHGVIFdwgllvAIAGSSVALLMI 85
Cdd:MTH00040   14 IVPVLLAVAFLTLVERKVLGYMQFRKGPNVvgpyglLQPFADGLKLFikeTLKPSNASPYLF------FFSPVLFLFLAL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  86 PMGGIHPLSGSG-----DLLVILYLMIFASVGLgLSAGASENPNAS-MGVSRKLMLGLGYEVPFILILLAMMTYHHTTSL 159
Cdd:MTH00040   88 LLWSLIPVPTPTlnvnlSLLLVLGLSSLSVYAL-LGSGWASNSKYSlLGAIRAVAQTISYEISLGLILLSLVIFSGSFSL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 160 VALVAAQRATGVLGALrFPLSAVAAILIMpALQGVRPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTAVILSLMVD 239
Cdd:MTH00040  167 SSISNSQNGSWLLFPC-LPLFYIWFISTL-AETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1490909965 240 LFFGGAT--------NLGIFILKMTGLFLFGVLVNAVYPRFRVEQALRYCWRWPTWFALGGLIMAMV 298
Cdd:MTH00040  245 LFLGGGSpfneifpiNIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLL 311
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 1-297 3.92e-06

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 47.47  E-value: 3.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965   1 MTIGLQIAWMISLpvVMILLVAVVFTGISLKVTARIDRRYGPP------IYQPVIDLVKLVS---LKTNVSHGVIFdwgL 71
Cdd:MTH00010    1 MNISFFISILLSY--VMALLAMAFYTLLERKALGYFQLRKGPNkvglagIPQPFADAIKLFTkeqTKPSPANITPF---L 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  72 LVAIAGSSVALLMipmGGIHPLSGSGDLL---VILYLMIFA-SVGLGLSAGASENPN-ASMGVSRKLMLGLGYEVPFILI 146
Cdd:MTH00010   76 GAPMMSLILALLL---WSLYPHKHPSFFLkfsILLFLCVSSmNVYTTLGAGWTSNSKyALLGALRSVAQTISYEVSMSLI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 147 LLAMMTYHHTTSLVALVAAQRATGVLgaLRFPLSAVAAILIMpALQGVRPFDFVTAPQEVASGPMVELGGKYLALM---- 222
Cdd:MTH00010  153 LLSALLILQTFSFSKIIMSQYSWILL--MIIPLTVSWFITNL-AETNRTPFDFAEGESELVSGFNVEYSSGLFALIfmae 229

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1490909965 223 ---VIEQSLHTAVILSLMVDLFFggATNLGIFILKMTGLFLFgVLVNAVYPRFRVEQALRYCWRWPTWFALGGLIMAM 297
Cdd:MTH00010  230 yanILIMSLFTSVFFTSFIPSIF--ISDLMLILKTVFLAFLF-IWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISI 304
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 15-283 7.24e-06

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 46.91  E-value: 7.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  15 VVMILLVAVVFTGISLKVTARIDRRYGPPI------YQPVIDLVKLV---SLKTNVSHGVIFdwgLLVAIAGSSVAL-LM 84
Cdd:MTH00134   16 IVPVLLAVAFLTLLERKVLGYMQLRKGPNIvgpyglLQPIADGVKLFikePVRPSTSSPFLF---LATPMLALTLALtLW 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  85 IPMGGIHPLSgsgDL-LVILYLMIFASVG----LGlSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMMTYHHTTSL 159
Cdd:MTH00134   93 APMPMPYPVT---DLnLGILFILALSSLAvysiLG-SGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTL 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 160 VALVAAQRATGVLgALRFPLSAVAAILIMpALQGVRPFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTAVILSLMVD 239
Cdd:MTH00134  169 QTFNTAQESIWLL-LPAWPLAAMWYISTL-AETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1490909965 240 LFFGG----------ATNLGIFILKMTGLFLFgvlVNAVYPRFRVEQALRYCWR 283
Cdd:MTH00134  247 LFLGAshiptlpeltTINLMTKAALLSVVFLW---VRASYPRFRYDQLMHLVWK 297
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 10-283 2.54e-05

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 45.00  E-value: 2.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  10 MISLPVVMI-LLVAVVF-TGISLKVTARIDRRYGPPI------YQPVIDLVKLVS---LKTNVSHGVIFdwgLLVAIAGS 78
Cdd:MTH00104    3 MINILLLIIpILLAVAFlTLVERKVLGYMQLRKGPNIvgpyglLQPFADAMKLFTkepLRPLTSSTTMF---IIAPILAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  79 SVALLM-IPMGGIHPLSGSG-DLLVILYLMIFASVGLGLSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMMTYHHT 156
Cdd:MTH00104   80 TLALTMwIPLPMPYPLINMNlGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 157 TSLVALVAAQRATGVLgalrFPLSAVAAILIMPALQGVR--PFDFVTAPQEVASGPMVELGGKYLALMVIEQSLHTAVIL 234
Cdd:MTH00104  160 FTLSTLITTQEHLWLI----FPSWPLAMMWFISTLAETNraPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMN 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1490909965 235 SLMVDLFFGG----------ATNLGIFILKMTGLFLFgvlVNAVYPRFRVEQALRYCWR 283
Cdd:MTH00104  236 ALTTILFLGAfhnpympelyTTNFTIKTLLLTILFLW---IRASYPRFRYDQLMHLLWK 291
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 10-283 1.18e-04

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 43.07  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  10 MISLPVVMIL--LVAVVF-TGISLKVTARIDRRYGPPI------YQPVIDLVKLV---SLKTNVSHGVIFdwgLLVAIAG 77
Cdd:MTH00071    7 LIINPLLYIIpvLLAVAFlTLVERKVLGYMQLRKGPNIvgpmglLQPIADGLKLFikePIRPSTSSQILF---ILMPTMA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965  78 SSVALLM-IPMGGIHPLSgsgDL-LVILYLMIFASVG----LGlSAGASENPNASMGVSRKLMLGLGYEVPFILILLAMM 151
Cdd:MTH00071   84 LTLALIIwTPLPMPNNLS---NLnLGILFILALSSLAvysiLG-SGWASNSKYALIGALRAVAQTISYEVTLGLILLCLI 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909965 152 TYHHTTSLVALVAAQRATGVLgalrFPLSAVAAILIMPALQGVR--PFDFVTAPQEVASGPMVELGGKYLALMVIEQSLH 229
Cdd:MTH00071  160 LLTGGFSLMNFNTTQEFMWLI----IPAWPMAAMWFISTLAETNraPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 235

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1490909965 230 TAVILSLMVDLFFGGATNLG-------IFILKMTGLFLFGVLVNAVYPRFRVEQALRYCWR 283
Cdd:MTH00071  236 ILMMNTLSTILFLGSTYNHLqpelstmNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWK 296
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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