|
Name |
Accession |
Description |
Interval |
E-value |
| ComP |
COG4585 |
Signal transduction histidine kinase ComP [Signal transduction mechanisms]; |
166-403 |
7.11e-63 |
|
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
Pssm-ID: 443642 [Multi-domain] Cd Length: 252 Bit Score: 202.54 E-value: 7.11e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 166 LTTILAGAAGVYGALSYTVRAFTEIYARKNRALRARERELSklsQRILSAQDEERRRIARVLHDELGQTLAAVKLEL--- 242
Cdd:COG4585 3 ALALLGALALLVGALLGLLLALVLLRARRAERAAELERELA---ARAEEAREEERRRIARELHDGVGQSLSAIKLQLeaa 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 243 ---------AAGEDVTRAQGLIDRAISQTRDLAHSLRPPLLDDLGLGPSLRRLGRMVEEAGNVDVRVRVEITE-RLPQEH 312
Cdd:COG4585 80 rrlldadpeAAREELEEIRELAREALAELRRLVRGLRPPALDDLGLAAALEELAERLLRAAGIRVELDVDGDPdRLPPEV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 313 EGLLFSAAQEALRNIEAHAQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP--GLGLRGIRERVEGIGGRMSVFSRPGE 390
Cdd:COG4585 160 ELALYRIVQEALTNALKHAGATRVTVTLEVDDGELTLTVRDDGVGFDPEAAPggGLGLRGMRERAEALGGTLTIGSAPGG 239
|
250
....*....|...
gi 1490909939 391 GTRLEVEVPYAGD 403
Cdd:COG4585 240 GTRVRATLPLAAA 252
|
|
| PRK11644 |
PRK11644 |
signal transduction histidine-protein kinase/phosphatase UhpB; |
195-399 |
1.27e-33 |
|
signal transduction histidine-protein kinase/phosphatase UhpB;
Pssm-ID: 236945 [Multi-domain] Cd Length: 495 Bit Score: 131.25 E-value: 1.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 195 NRALRARERELSKLSQRILSAQDEERRRIARVLHDELGQTLAAVKLE------LAAGE-DVTRAQGLID----RAISQTR 263
Cdd:PRK11644 277 NQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQagiikrLAADNaSVKQSAQLIEqlslGVYDTVR 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 264 DLAHSLRPPLLDDLGLGPSLRRLGRMVE-EAGNVDVRVRVEITER-LPQEHEGLLFSAAQEALRNIEAHAQARRVEIAVE 341
Cdd:PRK11644 357 RLLGRLRPRQLDDLTLEQAIRSLMREMElEDRGIVSHLDWRIDESaLSETQRVTLFRVCQEGLNNIVKHADASAVTLQGW 436
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1490909939 342 QREGAIVLVVTDDGIGFD-HAAVPGLGLRGIRERVEGIGGRMSVFSRPgeGTRLEVEVP 399
Cdd:PRK11644 437 QQDERLMLVIEDDGSGLPpGSGQQGFGLRGMRERVTALGGTLTISCTH--GTRLSVSLP 493
|
|
| HATPase_UhpB-NarQ-NarX-like |
cd16917 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
316-399 |
1.92e-23 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli UhpB, NarQ and NarX, and Bacillus subtilis YdfH, YhcY and YfiJ; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli UhpB, a HK of the UhpB-UhpA TCS, NarQ and NarX, HKs of the NarQ-NarP and NarX-NarL TCSs, respectively, and Bacillus YdfH, YhcY and YfiJ HKs, of the YdfH-YdfI, YhcY-YhcZ and YfiJ-YfiK TCSs, respectively. In addition, it includes Bacillus YxjM, ComP, LiaS and DesK, HKs of the YxjM-YxjML, ComP-ComA, LiaS-LiaR, DesR-DesK TCSs, respectively. Proteins having this HATPase domain have a histidine kinase dimerization and phosphoacceptor domain; some have accessory domains such as GAF, HAMP, PAS and MASE sensor domains.
Pssm-ID: 340394 [Multi-domain] Cd Length: 87 Bit Score: 93.39 E-value: 1.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 316 LFSAAQEALRNIEAHAQARRVEIAVEQREGAIVLVVTDDGIGFD---HAAVPGLGLRGIRERVEGIGGRMSVFSRPGEGT 392
Cdd:cd16917 1 LYRIVQEALTNALKHAGASRVRVTLSYTADELTLTVVDDGVGFDgpaPPGGGGFGLLGMRERAELLGGTLTIGSRPGGGT 80
|
....*..
gi 1490909939 393 RLEVEVP 399
Cdd:cd16917 81 RVTARLP 87
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
316-399 |
1.40e-11 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 60.84 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 316 LFSAAQEALRN-IEAHAQARRVEIAVEqREGAIVLVVTDDGIGFDHAAVP-----------------GLGLRGIRERVEG 377
Cdd:pfam02518 6 LRQVLSNLLDNaLKHAAKAGEITVTLS-EGGELTLTVEDNGIGIPPEDLPrifepfstadkrggggtGLGLSIVRKLVEL 84
|
90 100
....*....|....*....|..
gi 1490909939 378 IGGRMSVFSRPGEGTRLEVEVP 399
Cdd:pfam02518 85 LGGTITVESEPGGGTTVTLTLP 106
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
313-401 |
2.10e-11 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 60.36 E-value: 2.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 313 EGLLFSAAQEALRN-IEAHAQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP-------------------GLGLRGIR 372
Cdd:smart00387 3 PDRLRQVLSNLLDNaIKYTPEGGRITVTLERDGDHVEITVEDNGPGIPPEDLEkifepffrtdkrsrkiggtGLGLSIVK 82
|
90 100
....*....|....*....|....*....
gi 1490909939 373 ERVEGIGGRMSVFSRPGEGTRLEVEVPYA 401
Cdd:smart00387 83 KLVELHGGEISVESEPGGGTTFTITLPLE 111
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| ComP |
COG4585 |
Signal transduction histidine kinase ComP [Signal transduction mechanisms]; |
166-403 |
7.11e-63 |
|
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
Pssm-ID: 443642 [Multi-domain] Cd Length: 252 Bit Score: 202.54 E-value: 7.11e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 166 LTTILAGAAGVYGALSYTVRAFTEIYARKNRALRARERELSklsQRILSAQDEERRRIARVLHDELGQTLAAVKLEL--- 242
Cdd:COG4585 3 ALALLGALALLVGALLGLLLALVLLRARRAERAAELERELA---ARAEEAREEERRRIARELHDGVGQSLSAIKLQLeaa 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 243 ---------AAGEDVTRAQGLIDRAISQTRDLAHSLRPPLLDDLGLGPSLRRLGRMVEEAGNVDVRVRVEITE-RLPQEH 312
Cdd:COG4585 80 rrlldadpeAAREELEEIRELAREALAELRRLVRGLRPPALDDLGLAAALEELAERLLRAAGIRVELDVDGDPdRLPPEV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 313 EGLLFSAAQEALRNIEAHAQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP--GLGLRGIRERVEGIGGRMSVFSRPGE 390
Cdd:COG4585 160 ELALYRIVQEALTNALKHAGATRVTVTLEVDDGELTLTVRDDGVGFDPEAAPggGLGLRGMRERAEALGGTLTIGSAPGG 239
|
250
....*....|...
gi 1490909939 391 GTRLEVEVPYAGD 403
Cdd:COG4585 240 GTRVRATLPLAAA 252
|
|
| UhpB |
COG3851 |
Signal transduction histidine kinase UhpB, glucose-6-phosphate specific [Signal transduction ... |
195-399 |
9.65e-38 |
|
Signal transduction histidine kinase UhpB, glucose-6-phosphate specific [Signal transduction mechanisms];
Pssm-ID: 443060 [Multi-domain] Cd Length: 493 Bit Score: 142.45 E-value: 9.65e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 195 NRALRARERELSKLSQRILSAQDEERRRIARVLHDELGQTLAAVKLELAAGEDVTRAQGLIDRAIS----------QTRD 264
Cdd:COG3851 268 NQQLEQELRENRALARQLVSAEESERREIARELHDEIGQNITAIRTQASILKRLAPQPEIEQSAQSieslalriydTTRR 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 265 LAHSLRPPLLDDLGLGPSLRRLG-RMVEEAGNVDvrVRVEITERLPQEHEGL---LFSAAQEALRNIEAHAQARRVEIAV 340
Cdd:COG3851 348 LLDRLRPAVLDELGLEEALRELPrELAFEEPGIS--CQLDLRGDPSLLDDTLqltLYRLVQEALTNILKHAEASQIRISL 425
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 341 EQREGAIVLVVTDDGIGFD-HAAVPGLGLRGIRERVEGIGGRMSVFSRPGeGTRLEVEVP 399
Cdd:COG3851 426 SQDKRLLSLEIRDDGIGLPpELRAKGFGLRGMRERVRALGGDFRLSSAPK-GTRLSVLLP 484
|
|
| PRK11644 |
PRK11644 |
signal transduction histidine-protein kinase/phosphatase UhpB; |
195-399 |
1.27e-33 |
|
signal transduction histidine-protein kinase/phosphatase UhpB;
Pssm-ID: 236945 [Multi-domain] Cd Length: 495 Bit Score: 131.25 E-value: 1.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 195 NRALRARERELSKLSQRILSAQDEERRRIARVLHDELGQTLAAVKLE------LAAGE-DVTRAQGLID----RAISQTR 263
Cdd:PRK11644 277 NQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQagiikrLAADNaSVKQSAQLIEqlslGVYDTVR 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 264 DLAHSLRPPLLDDLGLGPSLRRLGRMVE-EAGNVDVRVRVEITER-LPQEHEGLLFSAAQEALRNIEAHAQARRVEIAVE 341
Cdd:PRK11644 357 RLLGRLRPRQLDDLTLEQAIRSLMREMElEDRGIVSHLDWRIDESaLSETQRVTLFRVCQEGLNNIVKHADASAVTLQGW 436
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1490909939 342 QREGAIVLVVTDDGIGFD-HAAVPGLGLRGIRERVEGIGGRMSVFSRPgeGTRLEVEVP 399
Cdd:PRK11644 437 QQDERLMLVIEDDGSGLPpGSGQQGFGLRGMRERVTALGGTLTISCTH--GTRLSVSLP 493
|
|
| HATPase_UhpB-NarQ-NarX-like |
cd16917 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
316-399 |
1.92e-23 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli UhpB, NarQ and NarX, and Bacillus subtilis YdfH, YhcY and YfiJ; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli UhpB, a HK of the UhpB-UhpA TCS, NarQ and NarX, HKs of the NarQ-NarP and NarX-NarL TCSs, respectively, and Bacillus YdfH, YhcY and YfiJ HKs, of the YdfH-YdfI, YhcY-YhcZ and YfiJ-YfiK TCSs, respectively. In addition, it includes Bacillus YxjM, ComP, LiaS and DesK, HKs of the YxjM-YxjML, ComP-ComA, LiaS-LiaR, DesR-DesK TCSs, respectively. Proteins having this HATPase domain have a histidine kinase dimerization and phosphoacceptor domain; some have accessory domains such as GAF, HAMP, PAS and MASE sensor domains.
Pssm-ID: 340394 [Multi-domain] Cd Length: 87 Bit Score: 93.39 E-value: 1.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 316 LFSAAQEALRNIEAHAQARRVEIAVEQREGAIVLVVTDDGIGFD---HAAVPGLGLRGIRERVEGIGGRMSVFSRPGEGT 392
Cdd:cd16917 1 LYRIVQEALTNALKHAGASRVRVTLSYTADELTLTVVDDGVGFDgpaPPGGGGFGLLGMRERAELLGGTLTIGSRPGGGT 80
|
....*..
gi 1490909939 393 RLEVEVP 399
Cdd:cd16917 81 RVTARLP 87
|
|
| PRK10600 |
PRK10600 |
nitrate/nitrite two-component system sensor histidine kinase NarX; |
200-406 |
1.12e-16 |
|
nitrate/nitrite two-component system sensor histidine kinase NarX;
Pssm-ID: 182581 [Multi-domain] Cd Length: 569 Bit Score: 82.03 E-value: 1.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 200 ARERELSKLSQRILSaqdEERRRIARVLHDELGQTLAAVKLELAA----GEDVTRA-QGLIDR-------AISQTRDLAH 267
Cdd:PRK10600 345 ALERQQERQQQLIVM---EERATIARELHDSIAQSLSCMKMQVSClqmqGDALPESsRELLSQirnelnaSWRQLRELLT 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 268 SLRPPLlDDLGLGPSLRRLgrmVEEAG---NVDVRVRVEITERLPQEHEGL-LFSAAQEALRNIEAHAQARRVEIAVEQR 343
Cdd:PRK10600 422 TFRLQL-TEPGLRPALEAS---CEEFSarfGFPVKLDYQLPPRLVPSHQAIhLLQIAREALSNALKHAQASEVVVTVAQN 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1490909939 344 EGAIVLVVTDDGIGF-DHAAVPG-LGLRGIRERVEGIGGRMSVFSRPGEGTrlEVEVPYAGDKNR 406
Cdd:PRK10600 498 QNQVKLSVQDNGCGVpENAERSNhYGLIIMRDRAQSLRGDCRVRRRESGGT--EVVVTFIPEKTF 560
|
|
| PRK10935 |
PRK10935 |
nitrate/nitrite two-component system sensor histidine kinase NarQ; |
218-399 |
1.62e-12 |
|
nitrate/nitrite two-component system sensor histidine kinase NarQ;
Pssm-ID: 236800 [Multi-domain] Cd Length: 565 Bit Score: 69.11 E-value: 1.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 218 EERRRIARVLHDELGQTLAAVKLELA-----AGEDVTRAQGLI---DRAIS----QTRDLAHSLRPPLLD-DLGLGpslr 284
Cdd:PRK10935 362 EERATIARELHDSLAQVLSYLKIQLTllkrsLDEDNAKAQSIIaefDQALSdayrQLRELLTTFRLTIQEaNLGSA---- 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 285 rLGRMVEE-AGNVDVRVRVeiTERLPQehegLLFSAAQ---------EALRNIEAHAQARRVEI-AVEQREGAIVLVVTD 353
Cdd:PRK10935 438 -LEEMLDQlRNQTDAKITL--DCRLPS----QALDAQQqvhllqiirEATLNAIKHANASEIAVsCVTNPDGEHTVSIRD 510
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1490909939 354 DGIGFDHAAVPG--LGLRGIRERVEGIGGRMSVFSRPGEGTRLEVEVP 399
Cdd:PRK10935 511 DGIGIGELKEPEghYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFP 558
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
316-399 |
1.40e-11 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 60.84 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 316 LFSAAQEALRN-IEAHAQARRVEIAVEqREGAIVLVVTDDGIGFDHAAVP-----------------GLGLRGIRERVEG 377
Cdd:pfam02518 6 LRQVLSNLLDNaLKHAAKAGEITVTLS-EGGELTLTVEDNGIGIPPEDLPrifepfstadkrggggtGLGLSIVRKLVEL 84
|
90 100
....*....|....*....|..
gi 1490909939 378 IGGRMSVFSRPGEGTRLEVEVP 399
Cdd:pfam02518 85 LGGTITVESEPGGGTTVTLTLP 106
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
313-401 |
2.10e-11 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 60.36 E-value: 2.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 313 EGLLFSAAQEALRN-IEAHAQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP-------------------GLGLRGIR 372
Cdd:smart00387 3 PDRLRQVLSNLLDNaIKYTPEGGRITVTLERDGDHVEITVEDNGPGIPPEDLEkifepffrtdkrsrkiggtGLGLSIVK 82
|
90 100
....*....|....*....|....*....
gi 1490909939 373 ERVEGIGGRMSVFSRPGEGTRLEVEVPYA 401
Cdd:smart00387 83 KLVELHGGEISVESEPGGGTTFTITLPLE 111
|
|
| HisKA_3 |
pfam07730 |
Histidine kinase; This is the dimerization and phosphoacceptor domain of a sub-family of ... |
219-274 |
2.89e-11 |
|
Histidine kinase; This is the dimerization and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with pfam00512 and pfam07536.
Pssm-ID: 429624 [Multi-domain] Cd Length: 68 Bit Score: 58.79 E-value: 2.89e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1490909939 219 ERRRIARVLHDELGQTLAAVKLEL------------AAGEDVTRAQGLIDRAISQTRDLAHSLRPPLL 274
Cdd:pfam07730 1 ERNRIARELHDSVGQSLTAIKLQLelarrlldrdpeEAREQLDAIRELAREALQELRRLLGDLRPPAL 68
|
|
| COG4191 |
COG4191 |
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ... |
99-399 |
7.38e-10 |
|
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];
Pssm-ID: 443345 [Multi-domain] Cd Length: 361 Bit Score: 60.20 E-value: 7.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 99 SEWIGVIFYVFTVIYANFFLPELQGYLITGLVVLLYSSLVILEYFGVIPHRSLFPPYEAPYRNLAYNLTTILAGAAGVYG 178
Cdd:COG4191 3 RLLLLLLLLLALLRALALALALLLLLLLLLLALLLLLLALLLALLALLLLLLLLLLLLLLELLLLLLALLGGLLRLLLLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 179 ALSYTVRAFTEIYARKNRALRARERELSKLSQRILSAQDEERRRiaRVLHDELGQT--LAAVKlELAAG----------- 245
Cdd:COG4191 83 GLLLLLLLEALLLLLLAALDAEENAELEELERDITELERAEEEL--RELQEQLVQSekLAALG-ELAAGiaheinnplaa 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 246 ------------------EDVTRAQGLIDRAISQTRDLAHSLR------PPLLDDLGLGPSLRRLGRMVE-EAGNVDVRV 300
Cdd:COG4191 160 ilgnaellrrrledepdpEELREALERILEGAERAAEIVRSLRafsrrdEEEREPVDLNELIDEALELLRpRLKARGIEV 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 301 RVEITERLPQ--EHEGLLfsaaQEALRN-----IEA--HAQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP------- 364
Cdd:COG4191 240 ELDLPPDLPPvlGDPGQL----EQVLLNllinaIDAmeEGEGGRITISTRREGDYVVISVRDNGPGIPPEVLErifepff 315
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1490909939 365 ---------GLGL---RGIrerVEGIGGRMSVFSRPGEGTRLEVEVP 399
Cdd:COG4191 316 ttkpvgkgtGLGLsisYGI---VEKHGGRIEVESEPGGGTTFTITLP 359
|
|
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
111-401 |
1.15e-09 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 59.15 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 111 VIYANFFLPELQGYLITGLVVLLYSSLVILEYFGVIPHRSLFPPYEAPYRNLAYNLTTILAGAAGVYGALSYTVRAFTEI 190
Cdd:COG0642 2 LLLLLLLVLLLLLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLLL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 191 YARKNRALRARERELSKLSQRILSAQDEERRRIARVLHdELGQTLAAVK--LELAAGEDVTRAQGLIDRAISQTRDLAHs 268
Cdd:COG0642 82 LLLLLLLLLLLLLLLLALLLLLEEANEAKSRFLANVSH-ELRTPLTAIRgyLELLLEELDEEQREYLETILRSADRLLR- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 269 lrppLLDDL---------GLGPSLRR--LGRMVEE--------AGNVDVRVRVEITERLPQEH--EGLLfsaaQEALRN- 326
Cdd:COG0642 160 ----LINDLldlsrleagKLELEPEPvdLAELLEEvvelfrplAEEKGIELELDLPDDLPTVRgdPDRL----RQVLLNl 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 327 ----IEAHAQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP------------------GLGL---RGIrerVEGIGGR 381
Cdd:COG0642 232 lsnaIKYTPEGGTVTVSVRREGDRVRISVEDTGPGIPPEDLErifepffrtdpsrrgggtGLGLaivKRI---VELHGGT 308
|
330 340
....*....|....*....|
gi 1490909939 382 MSVFSRPGEGTRLEVEVPYA 401
Cdd:COG0642 309 IEVESEPGKGTTFTVTLPLA 328
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
239-403 |
3.18e-09 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 58.43 E-value: 3.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 239 KLELAAGEDVTRAQGLIDRAISQTRDLAH---------SLRPPLLDDLGLGPSLRRLGRMVEEA-GNVDVRVRVEITERL 308
Cdd:COG5000 229 KLADKLEEDREDLERALDTIIRQVDRLKRivdefldfaRLPEPQLEPVDLNELLREVLALYEPAlKEKDIRLELDLDPDL 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 309 PQehegLLFSAAQ--EALRN-----IEAHAQARRVEIAVEQREGAIVLVVTDDGIGF-----DHAAVP---------GLG 367
Cdd:COG5000 309 PE----VLADRDQleQVLINllknaIEAIEEGGEIEVSTRREDGRVRIEVSDNGPGIpeevlERIFEPffttkpkgtGLG 384
|
170 180 190
....*....|....*....|....*....|....*....
gi 1490909939 368 L---RGIrerVEGIGGRMSVFSRPGEGTRLEVEVPYAGD 403
Cdd:COG5000 385 LaivKKI---VEEHGGTIELESRPGGGTTFTIRLPLAEE 420
|
|
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
217-401 |
5.28e-08 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 53.37 E-value: 5.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 217 DEERRRIARVLHDElgqtlaavklelaagedVTRAQGLIDRAISQTRDLAHSLRPPL----LDDLgLGPSLRRLGRMVEE 292
Cdd:COG2205 49 PEERRELLEIIRES-----------------AERLLRLIEDLLDLSRLESGKLSLELepvdLAEL-LEEAVEELRPLAEE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 293 AGnvdVRVRVEITERLP--QEHEGLLFSAAQEALRN-IEAHAQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP----- 364
Cdd:COG2205 111 KG---IRLELDLPPELPlvYADPELLEQVLANLLDNaIKYSPPGGTITISARREGDGVRISVSDNGPGIPEEELErifer 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1490909939 365 -------------GLGL---RGIrerVEGIGGRMSVFSRPGEGTRLEVEVPYA 401
Cdd:COG2205 188 fyrgdnsrgeggtGLGLaivKRI---VEAHGGTIWVESEPGGGTTFTVTLPLA 237
|
|
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
246-403 |
2.56e-07 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 52.16 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 246 EDVTRAQGLIDRAISQTRDLAHSLRPPLLDDLglgpslrrLGRMVEEAGNVDVRVRVEITERLPQEHE---------GLL 316
Cdd:COG3290 218 EALEYIDEISEELQELIDSLLSRIGNPVLAAL--------LLGKAARARERGIDLTIDIDSDLPDLPLsdtdlvtilGNL 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 317 FSAAQEALRNIEAhaQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP---------------GLGLRGIRERVEGIGGR 381
Cdd:COG3290 290 LDNAIEAVEKLPE--EERRVELSIRDDGDELVIEVEDSGPGIPEELLEkifergfstklgegrGLGLALVKQIVEKYGGT 367
|
170 180
....*....|....*....|..
gi 1490909939 382 MSVFSRPGEGTRLEVEVPYAGD 403
Cdd:COG3290 368 IEVESEEGEGTVFTVRLPKEGE 389
|
|
| YesM |
COG2972 |
Sensor histidine kinase YesM [Signal transduction mechanisms]; |
327-400 |
4.24e-07 |
|
Sensor histidine kinase YesM [Signal transduction mechanisms];
Pssm-ID: 442211 [Multi-domain] Cd Length: 445 Bit Score: 51.94 E-value: 4.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 327 IEAHAQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP-------------GLGLRGIRERVE---GIGGRMSVFSRPGE 390
Cdd:COG2972 353 IEPKEGGGTIRISIRKEGDRLVITVEDNGVGMPEEKLEklleelsskgegrGIGLRNVRERLKlyyGEEYGLEIESEPGE 432
|
90
....*....|
gi 1490909939 391 GTRLEVEVPY 400
Cdd:COG2972 433 GTTVTIRIPL 442
|
|
| PRK13837 |
PRK13837 |
two-component system VirA-like sensor kinase; |
347-399 |
1.59e-06 |
|
two-component system VirA-like sensor kinase;
Pssm-ID: 237526 [Multi-domain] Cd Length: 828 Bit Score: 50.45 E-value: 1.59e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1490909939 347 IVLVVTDDGIGFDHAAVP--------------GLGLRGIRERVEGIGGRMSVFSRPGEGTRLEVEVP 399
Cdd:PRK13837 608 VLLRVSDTGAGIDEAVLPhifepffttraggtGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLP 674
|
|
| RsbW |
COG2172 |
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]; |
319-399 |
4.31e-06 |
|
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];
Pssm-ID: 441775 [Multi-domain] Cd Length: 127 Bit Score: 45.67 E-value: 4.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 319 AAQEALRNIEAHAQAR----RVEIAVEQREGAIVLVVTDDGIGFDHAAVP---------GLGLRGIRERVEgiggRMSVF 385
Cdd:COG2172 38 AVSEAVTNAVRHAYGGdpdgPVEVELELDPDGLEIEVRDEGPGFDPEDLPdpystlaegGRGLFLIRRLMD----EVEYE 113
|
90
....*....|....
gi 1490909939 386 SRPGeGTRLEVEVP 399
Cdd:COG2172 114 SDPG-GTTVRLVKR 126
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
327-406 |
5.36e-06 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 48.37 E-value: 5.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 327 IEAHAQA--RRVEIAVEQREGAIVLVVTDDGIGFDHAAVP--------------GLGLRGIRERVEGIGGRMSVFSRPGE 390
Cdd:PRK11086 446 LEAVGGEegGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDaifdkgystkgsnrGVGLYLVKQSVENLGGSIAVESEPGV 525
|
90
....*....|....*.
gi 1490909939 391 GTRLEVEVPYAGDKNR 406
Cdd:PRK11086 526 GTQFFVQIPWDGERSN 541
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
74-403 |
1.27e-05 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 46.85 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 74 LHWAHAGFFIAEIVLITALIHLMGGSEWIGVIFYVFTVIYANFFLPELQGYLITGLVVLLYSSLVILEYFGVIPHRSLFP 153
Cdd:COG5002 8 LLALLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLLLLLLLLLLLLALLLLLLLLLLLLALALLLLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 154 PYEAPYRNLAYNLTTILAGAAGVYGALSYTVRAFTEIYARKNRALRARERELSKLSQRILSA----------QDEERRR- 222
Cdd:COG5002 88 LLLLLLLLLLLLALLILLLLLALLILLAALLLLLSELLLLLLLLGRLSLRLSALLLGLLLLAaverditeleRLEQMRRe 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 223 -IARVLHdELGQTLAAVK-----LELAAGEDVTRAQGLIDRAISQTRDLAHslrppLLDDL-----------GLGPSLRR 285
Cdd:COG5002 168 fVANVSH-ELRTPLTSIRgylelLLDGAADDPEERREYLEIILEEAERLSR-----LVNDLldlsrlesgelKLEKEPVD 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 286 LGRMVEE--------AGNVDVRVRVEITERLPQEH--EGLLfsaaQEALRN-----IEAHAQARRVEIAVEQREGAIVLV 350
Cdd:COG5002 242 LAELLEEvveelrplAEEKGIELELDLPEDPLLVLgdPDRL----EQVLTNlldnaIKYTPEGGTITVSLREEDDQVRIS 317
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1490909939 351 VTDDGIGFDHAAVP--------------------GLGL---RGIrerVEGIGGRMSVFSRPGEGTRLEVEVPYAGD 403
Cdd:COG5002 318 VRDTGIGIPEEDLPriferfyrvdksrsretggtGLGLaivKHI---VEAHGGRIWVESEPGKGTTFTITLPLARE 390
|
|
| CheA |
COG0643 |
Chemotaxis protein histidine kinase CheA [Signal transduction mechanisms]; |
240-399 |
3.84e-05 |
|
Chemotaxis protein histidine kinase CheA [Signal transduction mechanisms];
Pssm-ID: 440408 [Multi-domain] Cd Length: 563 Bit Score: 45.94 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 240 LELAAGEDVTRAQGLIDRAISQTRDLAHSLR--PpllddlgLGPSLRRLGRMVEEAG---NVDVRVRVE---------IT 305
Cdd:COG0643 203 LEDESLRELEEALEQLSRLTRELQDGVMRLRmvP-------ISTVFNRFPRMVRDLArelGKEVELVIEgeeteldrtVL 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 306 ERL--PQEHegllfsaaqeALRN-----IEAhAQARR---------VEIAVEQREGAIVLVVTDDGIGFDHAAV------ 363
Cdd:COG0643 276 ERLgdPLVH----------LVRNavdhgIET-PEERLaagkpetgtITLSAYHEGGRVVIEVSDDGRGLDLEKIrakaie 344
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1490909939 364 -----------------------PGL----------GlRGI-----RERVEGIGGRMSVFSRPGEGTRLEVEVP 399
Cdd:COG0643 345 kglitaeeaaalsdeellelifaPGFstaeevtdlsG-RGVgmdvvKTNIEALGGTIEIESEPGKGTTFTLRLP 417
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
2-399 |
6.10e-05 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 45.16 E-value: 6.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 2 VSDPDFAELKATVIKTVMARRITLGAFSAIALIVILLTKISYLNPLFYAPLVWFLLTFPFKYLIERQTNPTGLHWAHAGF 81
Cdd:COG4251 65 LLLLLLLLLVLAALALLLLLLLLELALVLLALLLVLLLLLALLLLLALLLLLELLLLLLALLLLLLLLALLLLEELALLR 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 82 FIAEIVLITALIHLMGGSEWIGVIFYVFTVIYANFFLPELQGYLITGLVVLLYSSLVILEYFGVIPHRSLFPPYEAPYRN 161
Cdd:COG4251 145 LALALLLLLLLLLLLLLLLLALILALLLAALAELELLLLLLLVLLLLLLLLLLLLLLLLRLLLELLLLLEAELLLSLGGG 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 162 LAYNLTTILAGAAGVYGALSYTVRAFTEIYARKNRALRARERELSKLSQRiLSAQDEERRRIARVL-HDeLGQTLAAVK- 239
Cdd:COG4251 225 LGLLLLLLLLLVLLLLLILLLLLLILVLELLELRLELEELEEELEERTAE-LERSNEELEQFAYVAsHD-LREPLRKISg 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 240 -----LELAAGEDVTRAQGLIDRAISQTRDLAHslrppLLDDLglgpsLR--RLGRMVEEAGNVDVR-----VRVEITER 307
Cdd:COG4251 303 fsqllEEDYGDKLDEEGREYLERIRDAAERMQA-----LIDDL-----LAysRVGRQELEFEPVDLNelleeVLEDLEPR 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 308 LPQEH--------------EGLLFSAAQEALRN-IEAHAQAR--RVEIAVEQREGAIVLVVTDDGIGFD----------- 359
Cdd:COG4251 373 IEERGaeievgplptvrgdPTLLRQVFQNLISNaIKYSRPGEppRIEIGAEREGGEWVFSVRDNGIGIDpeyaekifeif 452
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1490909939 360 -----HAAVPGLGL-----RGIrerVEGIGGRMSVFSRPGEGTRLEVEVP 399
Cdd:COG4251 453 qrlhsRDEYEGTGIglaivKKI---VERHGGRIWVESEPGEGATFYFTLP 499
|
|
| HATPase_CheA-like |
cd16916 |
Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some ... |
284-399 |
7.26e-05 |
|
Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases; This family includes the cytoplasmic histidine kinase (HK) CheA, a transmembrane receptor which, together with cytoplasmic adaptor protein (CheW), forms the lattice at the core of the chemosensory array that controls the cellular chemotaxis of motile bacteria and archaea. CheA forms a two-component signal transduction system (TCS) with the response regulator CheY. Proteins having this CheA-like HATPase domain generally also have a histidine-phosphotransfer domain, a histidine kinase homodimeric domain, and a regulatory domain; some are hybrid sensor histidine kinases as they contain a REC signal receiver domain.
Pssm-ID: 340393 [Multi-domain] Cd Length: 178 Bit Score: 43.34 E-value: 7.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 284 RRLGRMVE-EAGNVDVRVRVEITERL--PQEHegLLFSAAQEALRNIEAHAQAR-----RVEIAVEQREGAIVLVVTDDG 355
Cdd:cd16916 14 RELGKQVElVVEGEDTELDKSVLEKLadPLTH--LLRNAVDHGIEAPEERLAAGkppegTITLRAEHQGNQVVIEVSDDG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 356 IGFDHAAV-----------------------------P--------------GLGLRGIRERVEGIGGRMSVFSRPGEGT 392
Cdd:cd16916 92 RGIDREKIrekaierglitadeaatlsddevlnlifaPgfstaeqvtdvsgrGVGMDVVKRSIESLGGTIEVESEPGQGT 171
|
....*..
gi 1490909939 393 RLEVEVP 399
Cdd:cd16916 172 TFTIRLP 178
|
|
| HATPase_c_2 |
pfam13581 |
Histidine kinase-like ATPase domain; |
319-381 |
1.73e-04 |
|
Histidine kinase-like ATPase domain;
Pssm-ID: 433327 [Multi-domain] Cd Length: 127 Bit Score: 41.12 E-value: 1.73e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1490909939 319 AAQEALRNIEAHAQ----ARRVEIAVEQREGAIVLVVTDDGIGFDHAAVPGLGLRGIRERvEGIGGR 381
Cdd:pfam13581 35 AVGEACTNAVEHAYregpEGPVEVRLTSDGGGLVVTVADSGPPFDPLTLPPPDLEEPDED-RKEGGR 100
|
|
| HATPase_NtrY-like |
cd16944 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
316-399 |
2.44e-04 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Azorhizobium caulinodans NtrY; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Azorhizobium caulinodans ORS571 NtrY of the NtrY-NtrX TCS, which is involved in nitrogen fixation and metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also have PAS sensor domains.
Pssm-ID: 340420 [Multi-domain] Cd Length: 108 Bit Score: 40.21 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 316 LFSAAQEAlrnIEAHAQAR-RVEIAVE-QREGAIVLVVTDDGIGF--------------DHAAVPGLGLRGIRERVEGIG 379
Cdd:cd16944 12 ILKNAAEA---IEGRPSDVgEVRIRVEaDQDGRIVLIVCDNGKGFpremrhratepyvtTRPKGTGLGLAIVKKIMEEHG 88
|
90 100
....*....|....*....|
gi 1490909939 380 GRMSVFSRPGEGTRLEVEVP 399
Cdd:cd16944 89 GRISLSNREAGGACIRIILP 108
|
|
| COG3920 |
COG3920 |
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction ... |
335-399 |
2.91e-04 |
|
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction mechanisms];
Pssm-ID: 443125 [Multi-domain] Cd Length: 495 Bit Score: 42.97 E-value: 2.91e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1490909939 335 RVEIAVEQREGAIVLVVTDDGIGFDHAAVP----GLGLRGIRERVEGIGGRMSVfsRPGEGTRLEVEVP 399
Cdd:COG3920 423 RIRVSWRREDGRLRLTVSDNGVGLPEDVDPparkGLGLRLIRALVRQLGGTLEL--DRPEGTRVRITFP 489
|
|
| HATPase_YehU-like |
cd16956 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
335-399 |
3.25e-04 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli YehU; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Escherichia coli YehU, a HK of the two-component system (TCS) YehU-YehT which is involved in a nutrient sensing regulatory network. Proteins having this HATPase domain also contain a histidine kinase domain (His-kinase); some have a GAF sensor domain while some have a cupin domain.
Pssm-ID: 340432 [Multi-domain] Cd Length: 101 Bit Score: 39.73 E-value: 3.25e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1490909939 335 RVEIAVEQREGAIVLVVTDDGIGFDHAA--------VPGLGLRGIRERVEGIGGR---MSVFSRPGEGTRLEVEVP 399
Cdd:cd16956 26 RVEITARLDGQHLLLEVEDNGGGMDPDTlarilirsSNGLGLNLVDKRLRQAFGNdygLDIECAPGEGTRITIRLP 101
|
|
| HATPase_EL346-LOV-HK-like |
cd16951 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
289-399 |
3.71e-04 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Erythrobacter litoralis blue light-activated histidine kinase 2; This domain family includes the histidine kinase-like ATPase (HATPase) domain of blue light-activated histidine kinase 2 of Erythrobacter litoralis (EL346). Signaling commonly occurs within HK dimers, however EL346 functions as a monomer. Also included in this family are the HATPase domains of ethanolamine utilization sensory transduction histidine kinase (EutW), whereby regulation of ethanolamine, a carbon and nitrogen source for gut bacteria, results in autophosphorylation and subsequent phosphoryl transfer to a response regulator (EutV) containing an RNA-binding domain. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have an accessory PAS sensor domain, while some have an N-terminal histidine kinase domain.
Pssm-ID: 340427 [Multi-domain] Cd Length: 131 Bit Score: 40.09 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 289 MVEEAGNVDVRVRVEI-TERLPQEHEGLLFSAAQEALRNIEAHAQARR----VEIAVEQREGAIVLVVTDDGIGFDHAAV 363
Cdd:cd16951 12 INAIHAVGDIRINITGdTGPVSSEVATAIGLVVNELLQNALKHAFSDReggtITIRSVVDGDYLRITVIDDGVGLPQDED 91
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1490909939 364 P----GLGLRGIRERVEGIGGRMSVFSRPGEGTRLEVEVP 399
Cdd:cd16951 92 WpnkgSLGLQIVRSLVEGELKAFLEVQSAENGTRVNIDIP 131
|
|
| PRK13560 |
PRK13560 |
hypothetical protein; Provisional |
224-399 |
4.66e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 106506 [Multi-domain] Cd Length: 807 Bit Score: 42.35 E-value: 4.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 224 ARVLHDELGQTLaavkleLAAGEDVTRAQGLIDRAISQTRDLAhslrpplldDLGLGPSLRRLGRMVEEA-----GNVDV 298
Cdd:PRK13560 631 AEKLHDEEAKCA------FAESQDRICAMALAHEKLYQSEDLA---------DIDFLDYIESLTAHLKNSfaidfGRIDC 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 299 RVRV-----EITERLPQeheGLLFSaaqEALRNIEAHA------QARRVEIAvEQREGAIVLVVTDDGIG----FDHAAV 363
Cdd:PRK13560 696 KIDAddgclDIDKAIPC---GLIIS---ELLSNALKHAfpdgaaGNIKVEIR-EQGDGMVNLCVADDGIGlpagFDFRAA 768
|
170 180 190
....*....|....*....|....*....|....*.
gi 1490909939 364 PGLGLRGIRERVEGIGGRMSVFSRpgEGTRLEVEVP 399
Cdd:PRK13560 769 ETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFP 802
|
|
| HATPase_EvgS-ArcB-TorS-like |
cd16922 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases, many are hybrid ... |
335-399 |
1.06e-03 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases, many are hybrid sensor histidine kinases, similar to Escherichia coli EvgS, ArcB, TorS, BarA, RcsC; This family contains the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinases (HKs), including the following Escherichia coli HKs: EvgS, a HK of the EvgS-EvgA two-component system (TCS) that confers acid resistance; ArcB, a HK of the ArcB-ArcA TCS that modulates the expression of numerous genes in response to respiratory growth conditions; TorS, a HK of the TorS-TorR TCS which is involved in the anaerobic utilization of trimethylamine-N-oxide; BarA, a HK of the BarA-UvrY TCS involved in the regulation of carbon metabolism; and RcsC, a HK of the RcsB-RcsC TCS which regulates the expression of the capsule operon and of the cell division gene ftsZ. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), with most having accessory sensor domain(s) such as GAF, PAS and CHASE; many are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.
Pssm-ID: 340399 [Multi-domain] Cd Length: 110 Bit Score: 38.24 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 335 RVE-IAVEQREGAIVLVVTDDGIGFDHAAVP--------------------GLGLRGIRERVEGIGGRMSVFSRPGEGTR 393
Cdd:cd16922 24 RVSlEEEEEDGVQLRFSVEDTGIGIPEEQQArlfepfsqadssttrkyggtGLGLAISKKLVELMGGDISVESEPGQGST 103
|
....*.
gi 1490909939 394 LEVEVP 399
Cdd:cd16922 104 FTFTLP 109
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|
| PRK10364 |
PRK10364 |
two-component system sensor histidine kinase ZraS; |
243-409 |
1.51e-03 |
|
two-component system sensor histidine kinase ZraS;
Pssm-ID: 236674 [Multi-domain] Cd Length: 457 Bit Score: 40.54 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 243 AAGEDVTRAQGLI------DRAISQTRDLAH----SLRPPLLDDLgLGPSLRRLGRMVEEAGnVDVRVRV-EITERLPQE 311
Cdd:PRK10364 268 AGGEAHQLAQVMAkeadrlNRVVSELLELVKpthlALQAVDLNDL-INHSLQLVSQDANSRE-IQLRFTAnDTLPEIQAD 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 312 HEGLLFSAAQEALRNIEAHAQARRVEIAVEQREGAIVLVVTDDGIG-----FDHAAVP---------GLGLRGIRERVEG 377
Cdd:PRK10364 346 PDRLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGiaadqLEAIFTPyfttkaegtGLGLAVVHNIVEQ 425
|
170 180 190
....*....|....*....|....*....|..
gi 1490909939 378 IGGRMSVFSRPGEGTRLEVEVPYAGDKNRDRR 409
Cdd:PRK10364 426 HGGTIQVASQEGKGATFTLWLPVNITRRDPQG 457
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
246-399 |
1.75e-03 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 40.21 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 246 EDVTRAQGLIDRAISQTRDlahslRPPLLDDLGLGPSLRRLGRMVEEAGNVDVRVRVEITERLPQehegLLFSAAQ--EA 323
Cdd:COG3852 178 EEADRLNNLVDRLLSFSRP-----RPPEREPVNLHEVLERVLELLRAEAPKNIRIVRDYDPSLPE----VLGDPDQliQV 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 324 LRNI-----EA----------HAQARRVEIAVEQREGAIVLVVTDDGIG---------FDhaavP---------GLGL-- 368
Cdd:COG3852 249 LLNLvrnaaEAmpeggtitirTRVERQVTLGGLRPRLYVRIEVIDNGPGipeeildriFE----PffttkekgtGLGLai 324
|
170 180 190
....*....|....*....|....*....|..
gi 1490909939 369 -RGIrerVEGIGGRMSVFSRPGEGTRLEVEVP 399
Cdd:COG3852 325 vQKI---VEQHGGTIEVESEPGKGTTFRIYLP 353
|
|
| HATPase_RsbW-like |
cd16936 |
Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase ... |
319-381 |
2.01e-03 |
|
Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains; This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.
Pssm-ID: 340413 [Multi-domain] Cd Length: 91 Bit Score: 37.25 E-value: 2.01e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1490909939 319 AAQEALRNIEAHAQA----RRVEIAVEQREGAIVLVVTDDGIGFDHAAVPGlglrgiRERVEGIGGR 381
Cdd:cd16936 4 AVSEAVTNAVRHAYRhdgpGPVRLELDLDPDRLRVEVTDSGPGFDPLRPAD------PDAGLREGGR 64
|
|
| HATPase_DpiB-CitA-like |
cd16915 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
328-399 |
2.98e-03 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.
Pssm-ID: 340392 [Multi-domain] Cd Length: 104 Bit Score: 36.88 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490909939 328 EAHAQARRVEIAVEQREGAIVLVVTDDGIGFDHAAVP---------------GLGLRGIRERVEGIGGRMSVFSRPGEGT 392
Cdd:cd16915 18 ATGAPNKQVEVFLRDEGDDLVIEVRDTGPGIAPELRDkvfergvstkgqgerGIGLALVRQSVERLGGSITVESEPGGGT 97
|
....*..
gi 1490909939 393 RLEVEVP 399
Cdd:cd16915 98 TFSIRIP 104
|
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