NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1490726233|gb|RLC97253|]
View 

hypothetical protein DRI40_00720 [Chloroflexi bacterium]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3786 super family cl15013
Domain of unknown function (DUF3786); This presumed domain is functionally uncharacterized. ...
 9-112 5.46e-08

Domain of unknown function (DUF3786); This presumed domain is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 201 and 257 amino acids in length. Some proteins also contains an iron-sulfur cluster.


The actual alignment was detected with superfamily member pfam12654:

Pssm-ID: 432699  Cd Length: 176  Bit Score: 49.08  E-value: 5.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490726233   9 KLLSLKEIEGPVATHDGF-------LKHELARRKEALElvddaaRLAEYIGGRLEPIGrGESWSIakEVFPGIEILFVFQ 81
Cdd:pfam12654  69 KWVSFRELPGGAVYYPAFakraekpLAKTFGGDPELLK------AAAEKLGGKPLDSG-DAAYVF--PALPKIPLLLLFW 139

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1490726233  82 HGDDEFPANLRVLFfgDR--IENTRGEDLADLA 112
Cdd:pfam12654 140 EGDEEFPASANILF--DAsaEDYLDAEDLAVLG 170
 
Name Accession Description Interval E-value
DUF3786 pfam12654
Domain of unknown function (DUF3786); This presumed domain is functionally uncharacterized. ...
 9-112 5.46e-08

Domain of unknown function (DUF3786); This presumed domain is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 201 and 257 amino acids in length. Some proteins also contains an iron-sulfur cluster.


Pssm-ID: 432699  Cd Length: 176  Bit Score: 49.08  E-value: 5.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490726233   9 KLLSLKEIEGPVATHDGF-------LKHELARRKEALElvddaaRLAEYIGGRLEPIGrGESWSIakEVFPGIEILFVFQ 81
Cdd:pfam12654  69 KWVSFRELPGGAVYYPAFakraekpLAKTFGGDPELLK------AAAEKLGGKPLDSG-DAAYVF--PALPKIPLLLLFW 139

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1490726233  82 HGDDEFPANLRVLFfgDR--IENTRGEDLADLA 112
Cdd:pfam12654 140 EGDEEFPASANILF--DAsaEDYLDAEDLAVLG 170
 
Name Accession Description Interval E-value
DUF3786 pfam12654
Domain of unknown function (DUF3786); This presumed domain is functionally uncharacterized. ...
 9-112 5.46e-08

Domain of unknown function (DUF3786); This presumed domain is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 201 and 257 amino acids in length. Some proteins also contains an iron-sulfur cluster.


Pssm-ID: 432699  Cd Length: 176  Bit Score: 49.08  E-value: 5.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490726233   9 KLLSLKEIEGPVATHDGF-------LKHELARRKEALElvddaaRLAEYIGGRLEPIGrGESWSIakEVFPGIEILFVFQ 81
Cdd:pfam12654  69 KWVSFRELPGGAVYYPAFakraekpLAKTFGGDPELLK------AAAEKLGGKPLDSG-DAAYVF--PALPKIPLLLLFW 139

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1490726233  82 HGDDEFPANLRVLFfgDR--IENTRGEDLADLA 112
Cdd:pfam12654 140 EGDEEFPASANILF--DAsaEDYLDAEDLAVLG 170
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH