NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|149068064|gb|EDM17616|]
View 

ubiquinol cytochrome c reductase core protein 2, isoform CRA_a [Rattus norvegicus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PqqL super family cl33975
Predicted Zn-dependent peptidase, M16 family [General function prediction only];
1-57 3.07e-03

Predicted Zn-dependent peptidase, M16 family [General function prediction only];


The actual alignment was detected with superfamily member COG0612:

Pssm-ID: 440377 [Multi-domain]  Cd Length: 427  Bit Score: 33.74  E-value: 3.07e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 149068064   1 MSVETSEGFLSEIGSQALATGSYMPPPTVLQQIDAVADADVVKAAKKFVSGKKSMTA 57
Cdd:COG0612  362 LSLESNSGLASQLGRYELYGGDLDYLEEYLERIEAVTAEDVQAVARKYLDPDNLVVV 418
 
Name Accession Description Interval E-value
PqqL COG0612
Predicted Zn-dependent peptidase, M16 family [General function prediction only];
1-57 3.07e-03

Predicted Zn-dependent peptidase, M16 family [General function prediction only];


Pssm-ID: 440377 [Multi-domain]  Cd Length: 427  Bit Score: 33.74  E-value: 3.07e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 149068064   1 MSVETSEGFLSEIGSQALATGSYMPPPTVLQQIDAVADADVVKAAKKFVSGKKSMTA 57
Cdd:COG0612  362 LSLESNSGLASQLGRYELYGGDLDYLEEYLERIEAVTAEDVQAVARKYLDPDNLVVV 418
 
Name Accession Description Interval E-value
PqqL COG0612
Predicted Zn-dependent peptidase, M16 family [General function prediction only];
1-57 3.07e-03

Predicted Zn-dependent peptidase, M16 family [General function prediction only];


Pssm-ID: 440377 [Multi-domain]  Cd Length: 427  Bit Score: 33.74  E-value: 3.07e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 149068064   1 MSVETSEGFLSEIGSQALATGSYMPPPTVLQQIDAVADADVVKAAKKFVSGKKSMTA 57
Cdd:COG0612  362 LSLESNSGLASQLGRYELYGGDLDYLEEYLERIEAVTAEDVQAVARKYLDPDNLVVV 418
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH