|
Name |
Accession |
Description |
Interval |
E-value |
| PRK01318 |
PRK01318 |
membrane protein insertase; Provisional |
152-656 |
2.33e-114 |
|
membrane protein insertase; Provisional
Pssm-ID: 234942 [Multi-domain] Cd Length: 521 Bit Score: 352.64 E-value: 2.33e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 152 IRISTPLYEALIDPVGADLLEWKLREYH--LENGDAVDLVHDRTTD--------IGGQFAHALRVQledraldlRRVVFE 221
Cdd:PRK01318 41 ITVETDVLRLSIDTKGGRIDDLLLKKYKetLDSSPPVVLLSPSTEHpyfaqsglTGADGPDNVPNP--------DRTLYT 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 222 ADRHELVLDEGGAPQTLRLSADRGDGGRLTLNLEFDPARYGFDVEASFRGAPGDAMpmamEIAWPGGIAPSEPDSTNEYS 301
Cdd:PRK01318 113 ADGDSLVLADGQNELPVTLTWTNGNGLTFTKTYTLDRGDYMFTVEYSVNNNSGAPV----NLSPYGQLKRTGSSNFASYT 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 302 EYRAVARVGEDV-HKVKYGDLNKGGTKGHETyegmvSWGGVQSKYFLAAVIDAAPERGFVRLSGDANNG-VQTFQTNLGM 379
Cdd:PRK01318 189 FHGGAIGTPDEKyEKYTYKDIDDNLNISSKG-----GWVAILDKYFATALIPQNGQNNFYSKNLGNGLYqVGFKSPPVTV 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 380 QGRGTATVAYSVYIGPVEVNQLKVYDgepfNAQLTTLIDLGWgpIRPVAQFTLFALGQMHRVIPNWGWTIILFSLITKLI 459
Cdd:PRK01318 264 APGQSASTTARLYAGPKEVKLLAKEI----APGLDLAVDYGW--LWFITKPLFWLLDFLHSFVGNWGWAIILLTIIVKLL 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 460 FWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPVFFALFTILRKTIALRQ 539
Cdd:PRK01318 338 LFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIELRH 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 540 ADFGLWITDLSRPDvlfalPFEIPFLGsdfsLLPLLMAVAMWGQTKISQQTTaapaaggaGNMMAQQMKmmntmmplmmF 619
Cdd:PRK01318 418 APFIGWIHDLSAPD-----PYFILHIG----LLPILMGITMFLQQKLNPTPT--------DPMQAKIMK----------F 470
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1490246523 620 ------FIFYRSPSGLVLYWLVNTVVTALQTW---RVHNKKPAATA 656
Cdd:PRK01318 471 mpliftFFFLSFPAGLVLYWIVNNLLTIIQQYlinRRLEKKKLLAA 516
|
|
| 5TM_YidC_Alb3 |
cd20070 |
Five transmembrane core domain of membrane protein insertase YidC, Alb3, and similar proteins; ... |
446-649 |
2.63e-86 |
|
Five transmembrane core domain of membrane protein insertase YidC, Alb3, and similar proteins; This group is composed of the bacterial and chloroplastic members of the YidC/Oxa1/Alb3 protein family of insertases, including bacterial YidC, and chloroplastic ALBINO3 (Alb3) and Alb3-like proteins such as ALBINO3-like protein 1 (also called Alb4). Membrane protein insertase YidC, also called foldase YidC or membrane integrase YidC, facilitates proper folding, insertion, and assembly of inner membrane proteins and complexes. Depending on the nature of the substrate, YidC functions in a Sec-independent (YidC only) or a Sec-dependent manner as part of a complex containing YidC, the SecYEG channel, and SecDFYajC. YidC from Gram-negative bacteria contains an extra transmembrane segment (TM1) at the N-terminus and a large periplasmic domain, located between TM1 and TM2, that adopts a beta-super sandwich fold that is found in sugar-binding proteins such as galactose mutarotase. Alb3 and Alb3-like proteins are required for the post-translational insertion of the light-harvesting chlorophyll-binding proteins (LHCPs) into the chloroplast thylakoid membrane. Alb3 acts independently and may also function cooperatively with the thylakoid cpSecYE translocase to insert proteins co-translationally into the thylakoid membrane, similar to bacterial YidC that can function with the SecYEG translocase. YidC/Oxa1/Alb3 family insertases contain a core domain of five transmembrane (5TM) segments that is essential to insertase function.
Pssm-ID: 410994 [Multi-domain] Cd Length: 181 Bit Score: 267.71 E-value: 2.63e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 446 GWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPVFF 525
Cdd:cd20070 1 GLAIILLTILIRLLLLPLTLKQYKSMKKMQELQPKIKEIQEKYKDDKQKLQQEMMKLYKEHGVNPLGGCLPLLIQMPIFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 526 ALFTILRKTIALRQADFGLWITDLSRPDVLFalpfeipflgsdfsLLPLLMAVAMWGQTKISQQTTaapaaggagNMMAQ 605
Cdd:cd20070 81 ALYQVLRNSIELRGAPFLWWILDLSAPDPYY--------------ILPILMGVTMFLQQKLTPTPT---------DDQAP 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1490246523 606 QMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTWRVHN 649
Cdd:cd20070 138 QQKMMMYFMPVMFTFIFLSFPSGLVLYWLVSNLFSIIQQLIINK 181
|
|
| YidC |
COG0706 |
Membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis]; |
417-654 |
3.00e-86 |
|
Membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440470 [Multi-domain] Cd Length: 212 Bit Score: 268.91 E-value: 3.00e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 417 IDLGWgpIRPVAQFTLFALGQMHRVIPNWGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQS 496
Cdd:COG0706 1 IDYGW--FGFIAKPLFWLLNFLHSLVGNWGLAIILLTLIVRLLLFPLTVKQYKSMAKMQELQPELKEIQEKYKDDPQKLQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 497 SEMMRIYKENKVNPVGGCLPLVIQMPVFFALFTILRKTIALRQADFgLWITDLSRPDvlfalPFEIPflgsdfslLPLLM 576
Cdd:COG0706 79 QEMMKLYKEEGVNPLGGCLPMLIQMPIFIALYRVLRNSIELRHAPF-LGIPDLSAPD-----PYYIF--------LPILM 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1490246523 577 AVAMWGQTKISQQTtaapaaggagnMMAQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTWRVHNKKPAA 654
Cdd:COG0706 145 GVTMFLQQKLNPAP-----------AQDPQQKKMMYIMPLMFLFFFLSFPAGLVLYWVVSNLLTIGQQLIINRRLDKK 211
|
|
| 60KD_IMP |
pfam02096 |
60Kd inner membrane protein; |
445-645 |
1.25e-82 |
|
60Kd inner membrane protein;
Pssm-ID: 460443 [Multi-domain] Cd Length: 187 Bit Score: 258.56 E-value: 1.25e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 445 WGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPVF 524
Cdd:pfam02096 1 YGLAIILLTILIKLILFPLTYKQYKSMAKMQELQPEMKEIQEKYKDDRQKLQQEMMKLYKKEGVNPLGGCLPMLIQMPIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 525 FALFTILRKTIALRQADFGLWITDLSRPDvlfalpfeiPFLGSDFSLLPLLMAVAMWGQTKISQQTTaapaaggagNMMA 604
Cdd:pfam02096 81 IALYRVLRNSIELRHAPFFLWIADLSAPD---------PISILHYYILPILMGVTMFLQQKLTPAPQ---------DQPP 142
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1490246523 605 QQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTW 645
Cdd:pfam02096 143 QMKMMMLYFMPLMFLFFFLNFPAGLVLYWVVSNLLSIGQQL 183
|
|
| yidC_oxa1_cterm |
TIGR03592 |
membrane protein insertase, YidC/Oxa1 family, C-terminal domain; This model describes ... |
444-645 |
2.10e-78 |
|
membrane protein insertase, YidC/Oxa1 family, C-terminal domain; This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274665 [Multi-domain] Cd Length: 179 Bit Score: 247.01 E-value: 2.10e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 444 NWGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPV 523
Cdd:TIGR03592 1 NWGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKEDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 524 FFALFTILRKTIALRQADFgLWITDLSRPDVLFalpfeipflgsdfsLLPLLMAVAMWGQTKISQQTtaapaaggagNMM 603
Cdd:TIGR03592 81 FIALYQVLLRSIELRHAPF-LWIIDLSSPDPYY--------------ILPILMGVTMFLQQKLSPKG----------PPD 135
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1490246523 604 AQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTW 645
Cdd:TIGR03592 136 PAQQKMMMYFMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQL 177
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK01318 |
PRK01318 |
membrane protein insertase; Provisional |
152-656 |
2.33e-114 |
|
membrane protein insertase; Provisional
Pssm-ID: 234942 [Multi-domain] Cd Length: 521 Bit Score: 352.64 E-value: 2.33e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 152 IRISTPLYEALIDPVGADLLEWKLREYH--LENGDAVDLVHDRTTD--------IGGQFAHALRVQledraldlRRVVFE 221
Cdd:PRK01318 41 ITVETDVLRLSIDTKGGRIDDLLLKKYKetLDSSPPVVLLSPSTEHpyfaqsglTGADGPDNVPNP--------DRTLYT 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 222 ADRHELVLDEGGAPQTLRLSADRGDGGRLTLNLEFDPARYGFDVEASFRGAPGDAMpmamEIAWPGGIAPSEPDSTNEYS 301
Cdd:PRK01318 113 ADGDSLVLADGQNELPVTLTWTNGNGLTFTKTYTLDRGDYMFTVEYSVNNNSGAPV----NLSPYGQLKRTGSSNFASYT 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 302 EYRAVARVGEDV-HKVKYGDLNKGGTKGHETyegmvSWGGVQSKYFLAAVIDAAPERGFVRLSGDANNG-VQTFQTNLGM 379
Cdd:PRK01318 189 FHGGAIGTPDEKyEKYTYKDIDDNLNISSKG-----GWVAILDKYFATALIPQNGQNNFYSKNLGNGLYqVGFKSPPVTV 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 380 QGRGTATVAYSVYIGPVEVNQLKVYDgepfNAQLTTLIDLGWgpIRPVAQFTLFALGQMHRVIPNWGWTIILFSLITKLI 459
Cdd:PRK01318 264 APGQSASTTARLYAGPKEVKLLAKEI----APGLDLAVDYGW--LWFITKPLFWLLDFLHSFVGNWGWAIILLTIIVKLL 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 460 FWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPVFFALFTILRKTIALRQ 539
Cdd:PRK01318 338 LFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIELRH 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 540 ADFGLWITDLSRPDvlfalPFEIPFLGsdfsLLPLLMAVAMWGQTKISQQTTaapaaggaGNMMAQQMKmmntmmplmmF 619
Cdd:PRK01318 418 APFIGWIHDLSAPD-----PYFILHIG----LLPILMGITMFLQQKLNPTPT--------DPMQAKIMK----------F 470
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1490246523 620 ------FIFYRSPSGLVLYWLVNTVVTALQTW---RVHNKKPAATA 656
Cdd:PRK01318 471 mpliftFFFLSFPAGLVLYWIVNNLLTIIQQYlinRRLEKKKLLAA 516
|
|
| 5TM_YidC_Alb3 |
cd20070 |
Five transmembrane core domain of membrane protein insertase YidC, Alb3, and similar proteins; ... |
446-649 |
2.63e-86 |
|
Five transmembrane core domain of membrane protein insertase YidC, Alb3, and similar proteins; This group is composed of the bacterial and chloroplastic members of the YidC/Oxa1/Alb3 protein family of insertases, including bacterial YidC, and chloroplastic ALBINO3 (Alb3) and Alb3-like proteins such as ALBINO3-like protein 1 (also called Alb4). Membrane protein insertase YidC, also called foldase YidC or membrane integrase YidC, facilitates proper folding, insertion, and assembly of inner membrane proteins and complexes. Depending on the nature of the substrate, YidC functions in a Sec-independent (YidC only) or a Sec-dependent manner as part of a complex containing YidC, the SecYEG channel, and SecDFYajC. YidC from Gram-negative bacteria contains an extra transmembrane segment (TM1) at the N-terminus and a large periplasmic domain, located between TM1 and TM2, that adopts a beta-super sandwich fold that is found in sugar-binding proteins such as galactose mutarotase. Alb3 and Alb3-like proteins are required for the post-translational insertion of the light-harvesting chlorophyll-binding proteins (LHCPs) into the chloroplast thylakoid membrane. Alb3 acts independently and may also function cooperatively with the thylakoid cpSecYE translocase to insert proteins co-translationally into the thylakoid membrane, similar to bacterial YidC that can function with the SecYEG translocase. YidC/Oxa1/Alb3 family insertases contain a core domain of five transmembrane (5TM) segments that is essential to insertase function.
Pssm-ID: 410994 [Multi-domain] Cd Length: 181 Bit Score: 267.71 E-value: 2.63e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 446 GWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPVFF 525
Cdd:cd20070 1 GLAIILLTILIRLLLLPLTLKQYKSMKKMQELQPKIKEIQEKYKDDKQKLQQEMMKLYKEHGVNPLGGCLPLLIQMPIFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 526 ALFTILRKTIALRQADFGLWITDLSRPDVLFalpfeipflgsdfsLLPLLMAVAMWGQTKISQQTTaapaaggagNMMAQ 605
Cdd:cd20070 81 ALYQVLRNSIELRGAPFLWWILDLSAPDPYY--------------ILPILMGVTMFLQQKLTPTPT---------DDQAP 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1490246523 606 QMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTWRVHN 649
Cdd:cd20070 138 QQKMMMYFMPVMFTFIFLSFPSGLVLYWLVSNLFSIIQQLIINK 181
|
|
| YidC |
COG0706 |
Membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis]; |
417-654 |
3.00e-86 |
|
Membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440470 [Multi-domain] Cd Length: 212 Bit Score: 268.91 E-value: 3.00e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 417 IDLGWgpIRPVAQFTLFALGQMHRVIPNWGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQS 496
Cdd:COG0706 1 IDYGW--FGFIAKPLFWLLNFLHSLVGNWGLAIILLTLIVRLLLFPLTVKQYKSMAKMQELQPELKEIQEKYKDDPQKLQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 497 SEMMRIYKENKVNPVGGCLPLVIQMPVFFALFTILRKTIALRQADFgLWITDLSRPDvlfalPFEIPflgsdfslLPLLM 576
Cdd:COG0706 79 QEMMKLYKEEGVNPLGGCLPMLIQMPIFIALYRVLRNSIELRHAPF-LGIPDLSAPD-----PYYIF--------LPILM 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1490246523 577 AVAMWGQTKISQQTtaapaaggagnMMAQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTWRVHNKKPAA 654
Cdd:COG0706 145 GVTMFLQQKLNPAP-----------AQDPQQKKMMYIMPLMFLFFFLSFPAGLVLYWVVSNLLTIGQQLIINRRLDKK 211
|
|
| 60KD_IMP |
pfam02096 |
60Kd inner membrane protein; |
445-645 |
1.25e-82 |
|
60Kd inner membrane protein;
Pssm-ID: 460443 [Multi-domain] Cd Length: 187 Bit Score: 258.56 E-value: 1.25e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 445 WGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPVF 524
Cdd:pfam02096 1 YGLAIILLTILIKLILFPLTYKQYKSMAKMQELQPEMKEIQEKYKDDRQKLQQEMMKLYKKEGVNPLGGCLPMLIQMPIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 525 FALFTILRKTIALRQADFGLWITDLSRPDvlfalpfeiPFLGSDFSLLPLLMAVAMWGQTKISQQTTaapaaggagNMMA 604
Cdd:pfam02096 81 IALYRVLRNSIELRHAPFFLWIADLSAPD---------PISILHYYILPILMGVTMFLQQKLTPAPQ---------DQPP 142
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1490246523 605 QQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTW 645
Cdd:pfam02096 143 QMKMMMLYFMPLMFLFFFLNFPAGLVLYWVVSNLLSIGQQL 183
|
|
| yidC_oxa1_cterm |
TIGR03592 |
membrane protein insertase, YidC/Oxa1 family, C-terminal domain; This model describes ... |
444-645 |
2.10e-78 |
|
membrane protein insertase, YidC/Oxa1 family, C-terminal domain; This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274665 [Multi-domain] Cd Length: 179 Bit Score: 247.01 E-value: 2.10e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 444 NWGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPV 523
Cdd:TIGR03592 1 NWGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKEDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 524 FFALFTILRKTIALRQADFgLWITDLSRPDVLFalpfeipflgsdfsLLPLLMAVAMWGQTKISQQTtaapaaggagNMM 603
Cdd:TIGR03592 81 FIALYQVLLRSIELRHAPF-LWIIDLSSPDPYY--------------ILPILMGVTMFLQQKLSPKG----------PPD 135
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1490246523 604 AQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTW 645
Cdd:TIGR03592 136 PAQQKMMMYFMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQL 177
|
|
| PRK01001 |
PRK01001 |
putative inner membrane protein translocase component YidC; Provisional |
386-651 |
1.30e-49 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 234887 [Multi-domain] Cd Length: 795 Bit Score: 185.39 E-value: 1.30e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 386 TVAYSVYIGPVEVNQLKVYD-----GEPFNAQLTTLIDL-GWGPI--RPVAQFTLFALGQMHRVIPNWGWTIILFSLITK 457
Cdd:PRK01001 509 TYRFLVYAGPLADPTLKTLDraytnSKGENPEYLDSITFrGFFSFitEPFAALLFIIMKFFKFLTGSWGISIILLTVFLK 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 458 LIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPVFFALFTILRKTIAL 537
Cdd:PRK01001 589 LLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFLL 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 538 RQADF--GlWITDLSRPDVLFALPFEIPFLGSDFSLLPLLMAVAMWGQTKISQQ------TTAAPAAGGAGNMMAqqmkm 609
Cdd:PRK01001 669 RGASFipG-WIDNLTAPDVLFSWETPIWFIGNEFHLLPILLGVVMFAQQKISSLkrkgpvTDQQRQQEAMGTMMA----- 742
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1490246523 610 mntmmplMMF-FIFYRSPSGLVLYWLVNTVVTALQTWrVHNKK 651
Cdd:PRK01001 743 -------LLFtFMFYNFPSGLNIYWLSSMLLGVIQQW-VTNKI 777
|
|
| PRK00145 |
PRK00145 |
putative inner membrane protein translocase component YidC; Provisional |
428-654 |
1.36e-45 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 234665 [Multi-domain] Cd Length: 223 Bit Score: 161.45 E-value: 1.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 428 AQFTLFALGQMHRVIPN----WGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIY 503
Cdd:PRK00145 10 VQFFKFIHGFVSSVISNpnfsYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQQEMMKLY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 504 KENKVNPVGGCLPLVIQMPVFFALFTILRKTIALRQADFgLWITDLSRPDVLFalpfeipflgsdfsLLPLLMAVAMWGQ 583
Cdd:PRK00145 90 KEKGVNPLGGCLPLLIQWPILIALYYVFNNLTGINGVSF-LWIKDLAKPDITW--------------ILPILSGATTYLS 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1490246523 584 TKISQQTTaapaaggagNMMAQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTWrVHNKKPAA 654
Cdd:PRK00145 155 GYLMTKAD---------SSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY-FIKKLELK 215
|
|
| 5TM_YidC_Oxa1_Alb3 |
cd19751 |
Five transmembrane core domain of YidC/Oxa1/Alb3 protein family of insertases; The YidC/Oxa1 ... |
446-644 |
6.70e-38 |
|
Five transmembrane core domain of YidC/Oxa1/Alb3 protein family of insertases; The YidC/Oxa1/Alb3 protein family of insertases facilitate the insertion, folding and assembly of proteins of the inner membranes of bacteria and mitochondria, and the thylakoid membrane of plastids. Members include bacterial YidC, mitochondrial Cox18 and Oxa1, and chloroplastic Alb3 and Alb4. Membrane protein insertase YidC, also called foldase YidC or membrane integrase YidC, facilitates proper folding, insertion, and assembly of inner membrane proteins and complexes. Oxa1 and Cox18/Oxa2 mediate the insertion of both mitochondrion-encoded precursors and nuclear-encoded proteins from the matrix into the mitochondrial inner membrane. Alb3 and Alb3-like proteins, including Alb4, are required for the post-translational insertion of the light-harvesting chlorophyll-binding proteins (LHCPs) into the chloroplast thylakoid membrane. YidC/Oxa1/Alb3 family insertases contain a core domain of five transmembrane (5TM) segments that is essential to insertase function.
Pssm-ID: 410992 [Multi-domain] Cd Length: 189 Bit Score: 139.23 E-value: 6.70e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 446 GWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDD------QQKQSSEMMRIYKENKVNPVGGCLPLVI 519
Cdd:cd19751 1 GLSIIIVTILIRLALLPLTLKQQKSMRKMQVIRPEMEAIREKYKEKaskdkvQQEMQKEMLGLYKKHGVNPMAGCLPLFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 520 QMPVFFALFTILRKTIALRQADFgLWITDLSRPDVLFALPFeipflgsdfsllplLMAVAMWGQTKISQQTtaapaaGGA 599
Cdd:cd19751 81 QLPIFMAFYFAIMRTEEIRYHTF-LWFFDLGQPDYLYILPF--------------VAGITTYFQFKMTMSH------QQQ 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1490246523 600 GNMMAQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQT 644
Cdd:cd19751 140 MQMMQMQMKVMLYVMPVMIIIAGLSFPSALSLYWIISNLFMIIQT 184
|
|
| EcYidC-like_peri |
cd19961 |
periplasmic beta-super sandwich fold domain of membrane protein insertase YidC from ... |
150-405 |
5.96e-35 |
|
periplasmic beta-super sandwich fold domain of membrane protein insertase YidC from Escherichia coli and similar domains; This subfamily is composed of Escherichia coli YidC and similar proteins. Membrane protein insertase YidC, also called foldase YidC or membrane integrase YidC, facilitates proper folding, insertion, and assembly of inner membrane proteins and complexes. Depending on the nature of the substrate, YidC functions in a Sec-independent (YidC only) or a Sec-dependent manner as part of a complex containing YidC, the SecYEG channel, and SecDFYajC. YidC belongs to the YidC/Oxa1/Alb3 protein family of insertases that contain a core domain of five transmembrane (TM) segments that is essential to insertase function. In addition to this core transmembrane domain, YidC from Gram-negative bacteria contain an extra transmembrane segment (TM1) at the N-terminus and a large periplasmic domain, located between TM1 and TM2, that adopts a beta-super sandwich fold that is found in sugar-binding proteins such as galactose mutarotase. This periplasmic domain may have a role in protein assembly: a region of YidC that binds to SecF maps to one edge of the beta-super sandwich.
Pssm-ID: 411000 Cd Length: 255 Bit Score: 133.21 E-value: 5.96e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 150 EPIRISTPLYEALIDPVGADLLEWKLREYH--LENGDAVDLVHDRTTDIggqFAHALRVQlEDRALDLRRVVFEADRHEL 227
Cdd:cd19961 1 KRITVETDLLKASISTKGGRIKSVELKKYKetLPDSKPVELLSPDGPYV---AQLGLIGA-DGPLIPTADLLFTADSGSY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 228 VLDEggaPQTLRLSADRGDGGRLTLNLEFDPARYGFDVEASFRGAPGDAMPMAMEIAWPGGiaPSEPDSTNEYSEYR-AV 306
Cdd:cd19961 77 EGGD---SLTVTLTWTNGDGLTIEKTYTFDPDSYLIDVEVRVENNSSAPLSLSLYLQLQRK--GGEPEGSGSTITYEgPA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 307 ARVGEDVHKVKYGDLNKGgtkghETYEGMVSWGGVQSKYFLAAVIDAAPERGFVRLSG-DANNGVQTFQTNLGMQGRGTA 385
Cdd:cd19961 152 GTEDGKLEKLSFKDLEEE-----KLSSGKVGWVAFKQKYFLSALIPDQGFFYSAKLSGkDDGDGVKLLSAALTLPPGGSG 226
|
250 260
....*....|....*....|
gi 1490246523 386 TVAYSVYIGPVEVNQLKVYD 405
Cdd:cd19961 227 TFSFRLYAGPKDYDILKAYG 246
|
|
| yidC_nterm |
TIGR03593 |
membrane protein insertase, YidC/Oxa1 family, N-terminal domain; Essentially all bacteria have ... |
51-421 |
3.81e-32 |
|
membrane protein insertase, YidC/Oxa1 family, N-terminal domain; Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274666 Cd Length: 366 Bit Score: 128.22 E-value: 3.81e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 51 DRRTLLAFVLMFAVWFIWVTVFPQKPSEPAltddtvaqaqrpdggtsfgepdadssPPVVATRDQGGVDTGVDTGAAADA 130
Cdd:TIGR03593 1 NRRLILAIALSFVIFLLWQAWQSDPGPPPP--------------------------KPPAAAQEASAASATAAATSAAAP 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 131 GPGTAVAGGWAAVNSAGRGEPIRISTPLYEALIDPVGADLLEWKLREYHLENGD---AVDLVHDRTTD--------IGGQ 199
Cdd:TIGR03593 55 AAADAPSAAAAADAAAATAKRITVETDVLRASISTKGGDIDSLELKKYKETLDKdspPVLLLSDGAERlyvaqsglIGAN 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 200 FAhalrvqleDRALDLRRVVFEADRHELVLDEGGAPqtLRLSADRGDGGRLTLNLEFDPARYGFDVEASFRGAPGDAMPM 279
Cdd:TIGR03593 135 GA--------DLALPGHRTVWQAEGGEYTLTPGQLP--VTLTWDNSNGVTVTKTYTFDRDSYLIDVEYKVTNNGDAPVSL 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 280 AMEIAWPGGIAPSEPDSTNEYSEYR--AVARVGEDVHKVKYGDLNKGgtKGHETYEGMVSWGGVQSKYFLAAVIDAAPER 357
Cdd:TIGR03593 205 SLYGQLKRDLSPTEKSTYFLHETFTgaAYYTDGEKYQKVSFKDIEKK--KLNVETKGGAGWVGMLQHYFASAWIPPAGSD 282
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1490246523 358 GFVRLS-------GDANNGVQTFQTNLgmQGRGTATVAYSVYIGPVEVNQLKVYdgepfNAQLTTLIDLGW 421
Cdd:TIGR03593 283 GTTAFYygrklgnNVYIAGFVSPVVTV--APGQSATIKSRLYAGPKEQDVLKAI-----APGLDLAVDYGW 346
|
|
| PRK01315 |
PRK01315 |
putative inner membrane protein translocase component YidC; Provisional |
445-653 |
1.09e-29 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 234941 Cd Length: 329 Bit Score: 120.23 E-value: 1.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 445 WGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPVF 524
Cdd:PRK01315 42 WVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIF 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 525 FALFTILRKTIAlRQADFGLWITDLS---RPDVLFALPFEIPFLGS------DFSLLPLLMAVAMWGQTKISQQ--TTAA 593
Cdd:PRK01315 122 FALYRVLDSAAS-RGDGIGPINPPLLesfRHAHIFGAPLAATFLQAlnagntAVQVVAAVLIILMSASQFITQLqlMTKN 200
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 594 PAAGGAGNMMAQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTWRVHNKKPA 653
Cdd:PRK01315 201 MPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQFYVIRNNPT 260
|
|
| 5TM_Oxa1-like |
cd20069 |
Five transmembrane core domain of mitochondrial inner membrane protein Oxa1 and similar ... |
445-645 |
2.16e-28 |
|
Five transmembrane core domain of mitochondrial inner membrane protein Oxa1 and similar proteins; This group is composed mostly of the mitochondrial members of the YidC/Oxa1/Alb3 protein family of insertases, including mitochondrial inner membrane proteins Oxa1, Oxa1-like (Oxa1L), cytochrome c oxidase assembly protein 18 (Cox18, also called Oxa2), and Arabidopsis thaliana mitochondrial ALBINO3-like protein 3 (ALB33). It also includes Arabidopsis thaliana chloroplastic ALBINO3-like protein 2 (ALB32). Members of this group mediate the insertion of both mitochondrion-encoded precursors and nuclear-encoded proteins from the matrix into the mitochondrial inner membrane. Oxa1 and Cox18/Oxa2 are essential for the activity and assembly of cytochrome c oxidase, playing central roles in the translocation and export of the N-terminal and C-terminal parts, respectively, of the COX2 protein into the mitochondrial intermembrane space. ALB32 may be involved in the insertion of integral membrane proteins into the chloroplast thylakoid membranes. YidC/Oxa1/Alb3 family insertases contain a core domain of five transmembrane (5TM) segments that is essential to insertase function.
Pssm-ID: 410993 [Multi-domain] Cd Length: 201 Bit Score: 112.62 E-value: 2.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 445 WGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKD--------DQQKQSSEMMRIYKENKVNPVGGCLP 516
Cdd:cd20069 4 WWATIAATTVALRLLLLPLVIKSQRNAARMANLQPELQKLQEKLKEarasgdqlEAAEARKELKELMKKHNVNPLKSLLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 517 LVIQMPVFFALFTILRKTIALRQADF---G-LWITDLSRPDVLFALPFeipflgsdfsllplLMAVAMWGQTKISQQTta 592
Cdd:cd20069 84 PLVQAPVFISFFFALRKMANLPVPSFktgGlLWFTDLTVPDPYYILPI--------------LTSLTFLATIELGAET-- 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1490246523 593 apaaGGAGNMMAQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQTW 645
Cdd:cd20069 148 ----GTSGSPQSKTMKNVFRGLPVLMIPFTANFPSAVFLYWITSNLFSLAQNL 196
|
|
| PRK01622 |
PRK01622 |
membrane protein insertase YidC; |
424-644 |
1.05e-27 |
|
membrane protein insertase YidC;
Pssm-ID: 179310 Cd Length: 256 Bit Score: 112.54 E-value: 1.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 424 IRPVAQFTLFALGQMHrviPNWGWTIILFSLITKLIFWPL---THKSTESMK-RMQEIQPELQELKTKYK--DDQQKQSS 497
Cdd:PRK01622 42 VYPFSFLIQFVAHHIG---GSYGIAIIIVTLIIRSLMIPLavsQYKSQRGMQeKMAVMKPELDKIQAKLKvtKDLEKQKE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 498 ---EMMRIYKENKVNPVG-GCLPLVIQMPVFFALFTILRKTIALRQADFgLWITdlsrpdvlfalpfeipfLGSDFSLLP 573
Cdd:PRK01622 119 yqkEMMELYKSGNINPLAmGCLPLLIQMPILSAFYYAIRRTEEIASHSF-LWFN-----------------LGHADHILP 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1490246523 574 LLMAVAMWGQTKISQQTTAAPAAGgagnmmaQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQT 644
Cdd:PRK01622 181 IIAGLTYFIQMKVSQSNGTSPEQV-------QMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQT 244
|
|
| PRK02944 |
PRK02944 |
YidC family membrane integrase SpoIIIJ; |
444-645 |
1.11e-27 |
|
YidC family membrane integrase SpoIIIJ;
Pssm-ID: 179508 Cd Length: 255 Bit Score: 112.17 E-value: 1.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 444 NWGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKY--KDD--QQKQSSEMMRIYKENKVNPVGGCLPLVI 519
Cdd:PRK02944 58 NYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYssKDQatQQKLQQEMMQLFQKNGVNPLAGCLPIFI 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 520 QMPVFFALFTILRKTIALRQADFgLWItDLSRPDVLFalpfeipflgsdfsLLPLLMAVAMWGQTKISQQTTAAPAAGGA 599
Cdd:PRK02944 138 QMPILIAFYHAIMRTSEISKHSF-LWF-DLGQADPYY--------------ILPIVAGITTFIQQKLMMAGTAGQNPQMA 201
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1490246523 600 gnMMAQQMKmmntmMPLMMFFIFYrsPSGLVLYWLVNTVVTALQTW 645
Cdd:PRK02944 202 --MMLWLMP-----IMILIFAINF--PAALSLYWVVGNIFMIAQTY 238
|
|
| PRK02654 |
PRK02654 |
putative inner membrane protein translocase component YidC; Provisional |
439-532 |
3.64e-27 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 235058 Cd Length: 375 Bit Score: 113.54 E-value: 3.64e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 439 HRVIPNWGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQ----ELKTKYKDDQQKQSSEMMRIYKENKvNPVGGC 514
Cdd:PRK02654 21 YGIVPSYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQkrqaEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGC 99
|
90
....*....|....*...
gi 1490246523 515 LPLVIQMPVFFALFTILR 532
Cdd:PRK02654 100 LPLLVQMPILFALFATLR 117
|
|
| PRK03449 |
PRK03449 |
putative inner membrane protein translocase component YidC; Provisional |
445-532 |
5.90e-24 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 179580 Cd Length: 304 Bit Score: 102.84 E-value: 5.90e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 445 WGWTIILFSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQSSEMMRIYKENKVNPVGGCLPLVIQMPVF 524
Cdd:PRK03449 32 WALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKMALEMQKLQKEHGFNPILGCLPMLAQIPVF 111
|
....*...
gi 1490246523 525 FALFTILR 532
Cdd:PRK03449 112 LGLFHVLR 119
|
|
| YidC_periplas |
pfam14849 |
YidC periplasmic domain; This is the periplasmic domain of YidC, a bacterial membrane protein ... |
152-402 |
2.50e-21 |
|
YidC periplasmic domain; This is the periplasmic domain of YidC, a bacterial membrane protein which is required for the insertion and assembly of inner membrane proteins.
Pssm-ID: 464346 Cd Length: 266 Bit Score: 94.26 E-value: 2.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 152 IRISTPLYEALIDPVGADLLEWKLREYHLENGD---AVDLVHDRTTDIggQFAHALRVQLEDRALDLRRVVFEADRHELV 228
Cdd:pfam14849 1 ITVETDVLRGSISLKGGRIDDLELKKYRETLDDdspPVVLLSPSGGRT--YVAQSGLIGAGGPDLPPHDTVFTAEGGSYT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 229 LDEGGAPQTLRLSADRGDGGRLTLNLEFDPARYGFDVEASFRGAPGDA--MPMAMEIAWpggiAPSEPDSTNEYSEYRAV 306
Cdd:pfam14849 79 LADGTDELPVTLTWDNGNGVTFTKTYTFDRGSYLIDVTYEVENTSGAPvtLQPYGQLVR----DPGEPEGSSFYITYTGA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 307 ARVGEDV--HKVKYGDLNKGGTKGHETYEGmVSWGGVQSKYFLAAVI-DAAPERGFVRLSGDANNGVQT-FQTNLGM-QG 381
Cdd:pfam14849 155 AGSTDEGkyQKVSFDDIEKGGKLKVDTTTG-GGWVAMTQHYFLSAWIpDQDGTTNEFYTRFLGGNLYQAgYISPAVTvAP 233
|
250 260
....*....|....*....|.
gi 1490246523 382 RGTATVAYSVYIGPVEVNQLK 402
Cdd:pfam14849 234 GASATVTARLFAGPKEQKVLE 254
|
|
| PRK02201 |
PRK02201 |
putative inner membrane protein translocase component YidC; Provisional |
426-648 |
1.71e-19 |
|
putative inner membrane protein translocase component YidC; Provisional
Pssm-ID: 235012 Cd Length: 357 Bit Score: 90.46 E-value: 1.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 426 PVAQFTLFALGQMHRVIPNwGWTIIL----FSLITKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDD------QQKQ 495
Cdd:PRK02201 111 PIAQIILSIMASQSLSELY-GWSTILaiivVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYkkdkqmKQRK 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 496 SSEMMRIYKENKVNPVGGCLPLVIQMPVFFALFTILRKTIALRQADFG---LWITDLSRpdvLFA-----LPFEIPFLGS 567
Cdd:PRK02201 190 QQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPSIKVTTWLgidLSATSWQE---IFAgnwiyLPILIIVVPV 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 568 DF--SLLPLLmavamWGQTKISQQTTAAPAAggagnmmaQQMKMMNTMMPLMMF-FIFY--RSPSGLVLYWLVNTVVTAL 642
Cdd:PRK02201 267 QAlsQLLPQI-----LNKKKNKERTLNVKEK--------EALKKQNKTQNIISIvFIFFgvIFAAGVQIYWIIGGIWTIL 333
|
....*.
gi 1490246523 643 QTWRVH 648
Cdd:PRK02201 334 QTLGIH 339
|
|
| PRK02463 |
PRK02463 |
OxaA-like protein precursor; Provisional |
425-643 |
6.86e-18 |
|
OxaA-like protein precursor; Provisional
Pssm-ID: 235040 Cd Length: 307 Bit Score: 84.78 E-value: 6.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 425 RPVAQF-TLFA----LGqmhrvipnWGWTIILFSLITKLIFWPL----THKSTESMKRMQEIQPELQELKTKYKDDQQKQ 495
Cdd:PRK02463 43 APMSYFiDYFAnnlgLG--------FGLAIIIVTIIVRLIILPLglyqSWKATYQSEKMAYLKPVFEPINERLKNATTQE 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 496 -----SSEMMRIYKENKVNPVG--GCLPLVIQMPVFFALFTILRKTIALRQADFgLWItDLSRPDVLfalpfeipflgsd 568
Cdd:PRK02463 115 ekmaaQTELMAAQRENGISMLGgiGCLPLLIQMPFFSALYFAAQYTKGVSTSTF-LGI-DLGSPSLV------------- 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1490246523 569 fslLPLLMAVAMWGQTKISQQTTAAPAAggagnmmaQQMKMMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQ 643
Cdd:PRK02463 180 ---LTAIIGVLYFFQSWLSMMGVPEEQR--------EQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQ 243
|
|
| PRK00247 |
PRK00247 |
putative inner membrane protein translocase component YidC; Validated |
447-644 |
5.89e-08 |
|
putative inner membrane protein translocase component YidC; Validated
Pssm-ID: 178945 [Multi-domain] Cd Length: 429 Bit Score: 55.63 E-value: 5.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 447 WTIILFSLI--TKLIFWPLTHKSTESMKRMQEIQPELQELKTKYKDDQQKQS-SEMMRIYKE-NK---VNPVGGCLPLVI 519
Cdd:PRK00247 32 WFASLFGLVitVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASiRELQQKQKDlNKeygYNPLAGCVPALI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 520 QMPVFFALFTILrktiaLRQA--DFGLWITD------LSRPDV---LFALPFEIP-------------FLGSDFS----- 570
Cdd:PRK00247 112 QIPVFLGLYQVL-----LRMArpEGGLENPVhqpigfLTSEEVesfLQGRVFNVPlpayvsmpaeqlaYLGTTQAtvlaf 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490246523 571 LLPLLMAVAMWGQTKISQQTTAAPAAGGAGNMMAQQMK------MMNTMMPLMMFFIFYRSPSGLVLYWLVNTVVTALQT 644
Cdd:PRK00247 187 VLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLkflivmAILAPIFPLSLGLTGPFPTAIALYWVANNLWTLIQN 266
|
|
| |
