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Conserved domains on  [gi|148968233|gb|ABR19916|]
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cytochrome b, partial (mitochondrion) [Krobia guianensis]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-368 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 754.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00131   8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00131  88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00131 168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00131 248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLPTAGLMENK 368
Cdd:MTH00131 328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENK 375
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 754.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00131   8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00131  88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00131 168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00131 248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLPTAGLMENK 368
Cdd:MTH00131 328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENK 375
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-366 1.19e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 356.41  E-value: 1.19e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  15 PAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRG 94
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  95 LYYGSylYKE----TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFSVDNATLTR 170
Cdd:COG1290  111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 171 FFAFH-FLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEK----ISFHPYFSYKDLLGFAILLVALIALALFSPNllGD 245
Cdd:COG1290  189 FFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 246 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWLLVA 323
Cdd:COG1290  267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 148968233 324 DVMILTWIGGMPVehPFIIIGQIASVLYFTIFLIFLPTAGLME 366
Cdd:COG1290  347 FFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 6.91e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.47  E-value: 6.91e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   2 PLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGAS 81
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  82 FFFICIYLHIGRGLYYGSY--LYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWG 159
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 148968233 160 GFSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGST 199
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 7.63e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 250.38  E-value: 7.63e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   11 LVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   91 IGRGLYYG--SYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFSVDNATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 148968233  169 TRFFAFHFLLPFIIAAMTMVHLIFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 251-323 2.68e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.57  E-value: 2.68e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148968233  251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHT-SKLRALTFRPL--TQFLFWLLVA 323
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVatTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 754.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00131   8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00131  88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00131 168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00131 248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLPTAGLMENK 368
Cdd:MTH00131 328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENK 375
CYTB MTH00119
cytochrome b; Provisional
 1-368 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 690.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00119   9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00119  89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00119 169 FSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSP 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00119 249 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWT 328

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLPTAGLMENK 368
Cdd:MTH00119 329 LVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENK 376
CYTB MTH00074
cytochrome b; Provisional
 1-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 674.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00074   9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00074  89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00074 169 FSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSP 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00074 249 NLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLPTAGLMENK 368
Cdd:MTH00074 329 LVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENK 376
CYTB MTH00100
cytochrome b; Provisional
 1-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 671.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00100   8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00100  88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00100 168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00100 248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLPTAGLMENK 368
Cdd:MTH00100 328 LVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENN 375
CYTB MTH00191
cytochrome b; Provisional
 1-360 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 645.43  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00191   5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00191  85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGG 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00191 165 FSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSP 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00191 245 NLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWL 324

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLP 360
Cdd:MTH00191 325 WVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364
CYTB MTH00156
cytochrome b; Provisional
 4-358 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 619.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   4 LKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFF 83
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  84 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFSV 163
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 164 DNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSPNLL 243
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 244 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWLLVA 323
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 148968233 324 DVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIF 358
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00034
cytochrome b; Validated
 1-368 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 597.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00034   8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00034  88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00034 168 FSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFP 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00034 248 TALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWL 327

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLPTAGLMENK 368
Cdd:MTH00034 328 LIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENK 375
CYTB MTH00145
cytochrome b; Provisional
 1-357 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 589.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00145   9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00145  89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00145 169 FSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFP 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00145 249 NLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWI 328

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLI 357
Cdd:MTH00145 329 FVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLI 365
CYTB MTH00016
cytochrome b; Validated
 1-358 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 558.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00016   9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00016  89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00016 169 FSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWP 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00016 249 NILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWL 328

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIF 358
Cdd:MTH00016 329 LVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00022
cytochrome b; Validated
 1-368 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 512.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00022   7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00022  87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00022 167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00022 247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWF 326

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLPTAGLMENK 368
Cdd:MTH00022 327 LIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQ 374
CYTB MTH00053
cytochrome b; Provisional
 2-368 3.79e-178

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 499.62  E-value: 3.79e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   2 PLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGAS 81
Cdd:MTH00053  10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  82 FFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGF 161
Cdd:MTH00053  90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 162 SVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSPN 241
Cdd:MTH00053 170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 242 LLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWLL 321
Cdd:MTH00053 250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFL 329

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 148968233 322 VADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLIFLPTAGLMENK 368
Cdd:MTH00053 330 VGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENK 376
CYTB MTH00224
cytochrome b; Provisional
 1-357 7.66e-177

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 496.37  E-value: 7.66e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   1 HPLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00224   9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  81 SFFFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGG 160
Cdd:MTH00224  89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 161 FSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSP 240
Cdd:MTH00224 169 FAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEP 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00224 249 NLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWL 328

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 148968233 321 LVADVMILTWIGGMPVEHPFIIIGQIASVLYFTIFLI 357
Cdd:MTH00224 329 LVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 3-367 9.95e-138

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 397.00  E-value: 9.95e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   3 LLKIANDaLVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASF 82
Cdd:MTH00033   8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  83 FFICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFS 162
Cdd:MTH00033  87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 163 VDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFS--P 240
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriE 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 241 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWL 320
Cdd:MTH00033 247 TLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWF 326

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 148968233 321 LVADVMILTWIGGMPV-EHPFIIIGQIASVLYFTIFLIFLPTAGLMEN 367
Cdd:MTH00033 327 IVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
CYTB MTH00086
cytochrome b; Provisional
 8-359 1.14e-122

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 357.71  E-value: 1.14e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   8 NDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICI 87
Cdd:MTH00086   4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  88 YLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFSVDNAT 167
Cdd:MTH00086  84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 168 LTRFFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFaILLVALIALALFSPNLLGDPD 247
Cdd:MTH00086 164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPE 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 248 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSklrALTFRPLTQFLFWLLVADVMI 327
Cdd:MTH00086 243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVI 319

                        330       340       350
                 ....*....|....*....|....*....|..
gi 148968233 328 LTWIGGMPVEHPFIIIGQIASVLYFTIFLIFL 359
Cdd:MTH00086 320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-366 1.19e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 356.41  E-value: 1.19e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  15 PAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRG 94
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  95 LYYGSylYKE----TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFSVDNATLTR 170
Cdd:COG1290  111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 171 FFAFH-FLLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEK----ISFHPYFSYKDLLGFAILLVALIALALFSPNllGD 245
Cdd:COG1290  189 FFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 246 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWLLVA 323
Cdd:COG1290  267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 148968233 324 DVMILTWIGGMPVehPFIIIGQIASVLYFTIFLIFLPTAGLME 366
Cdd:COG1290  347 FFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 6.91e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 268.47  E-value: 6.91e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   2 PLLKIANDALVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGAS 81
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  82 FFFICIYLHIGRGLYYGSY--LYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWG 159
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 148968233 160 GFSVDNATLTRFFAFHFLLPFIIAAMTMVHLIFLHETGST 199
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-358 4.76e-86

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 264.54  E-value: 4.76e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  11 LVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLH 90
Cdd:MTH00046   9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  91 IGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFSVDNATLTR 170
Cdd:MTH00046  89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 171 FFAFHFLLPFIIAAMTMVHLIFLHETGSTNPAGL-NSDAEKISFHPYFSYKDLLGFAILLVALIALALFSPNLLGDPDNF 249
Cdd:MTH00046 169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 250 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLFSILILMLVPILHTSKLRALtfrpLTQFLFWLLVADVMILT 329
Cdd:MTH00046 249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLS 323

                        330       340
                 ....*....|....*....|....*....
gi 148968233 330 WIGGMPVEHPFIIIGQIASVLYFTIFLIF 358
Cdd:MTH00046 324 YLGGCHPEYPYLLISQLFSVLMVLLLFIF 352
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 7.63e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 250.38  E-value: 7.63e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   11 LVDLPAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   91 IGRGLYYG--SYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFSVDNATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 148968233  169 TRFFAFHFLLPFIIAAMTMVHLIFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 200-347 2.24e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 168.21  E-value: 2.24e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233 200 NPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 279
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 148968233 280 KLGGVLALLFSILILMLVPILHTSKLRAlTFRPLTQFLFWLLVADVMILTWIGGMPVEHPFIIIGQIA 347
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
251-351 2.03e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 2.03e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHTSKLRALTFRPLTQFLFWLLVADVMILTW 330
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 148968233  331 IGGMPVEHPFIIIGQIASVLY 351
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-246 4.57e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 139.30  E-value: 4.57e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233   81 SFFFICIYLHIGRGLYYGSYLYKE--TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLW 158
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  159 GGFSVDNATLTRFFAFHF-LLPFIIAAMTMVHLIFLHETGSTNPAGLNSDAEKISFHPYFSYKDLLGFAILLVALIALAL 237
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 148968233  238 FSPNLLGDP 246
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 15-201 1.66e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 134.45  E-value: 1.66e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  15 PAPSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRG 94
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  95 LYYGSYLYKE--TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFSVDNATLTRFF 172
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|
gi 148968233 173 AFH-FLLPFIIAAMTMVHLIFLHETGSTNP 201
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 17-201 7.52e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 116.74  E-value: 7.52e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  17 PSNISIWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRGLY 96
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148968233  97 YGSYLYKE--TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNSLVQWLWGGFSVDNATLTRFFAF 174
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 148968233 175 H-FLLPFIIAAMTMVHLIFLHETGSTNP 201
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 251-322 3.14e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.27  E-value: 3.14e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 148968233 251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHT-SKLRALTFRPL--TQFLFWLLV 322
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVatAVFLFGTLV 140
petD CHL00058
cytochrome b6/f complex subunit IV
 251-323 7.97e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.93  E-value: 7.97e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148968233 251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPIL-HTSKLRALTFRP--LTQFLFWLLVA 323
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPvaTTVFLIGTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 251-323 2.68e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.57  E-value: 2.68e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148968233  251 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPILHT-SKLRALTFRPL--TQFLFWLLVA 323
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVatTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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