|
Name |
Accession |
Description |
Interval |
E-value |
| Rab_bind |
pfam16704 |
Rab binding domain; This coiled-coil domain, found in GRIP and coiled-coil domain-containing ... |
1447-1511 |
3.75e-26 |
|
Rab binding domain; This coiled-coil domain, found in GRIP and coiled-coil domain-containing protein 2 and RANBP2-like and GRIP domain-containing protein, has been shown to bind to Rab in GRIP and coiled-coil domain-containing protein 2.
Pssm-ID: 435531 Cd Length: 65 Bit Score: 102.89 E-value: 3.75e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 148921645 1447 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKS 1511
Cdd:pfam16704 1 EPFVWTVEPSKSELTQKLSTTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKS 65
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
599-1377 |
4.41e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 4.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 599 EKKQLSRDLEVFLSQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQklfvktqlygfLKEMGSEVSEDSEEKDV 678
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK-----------LEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 679 VNvlQAVGESLAKINEEKCNLAFQRdEKVLELEKEIKCLQEESvvqcEELKSLLRDYEQEKVLLRKELEEIQSEKEALQS 758
Cdd:TIGR02168 286 LQ--KELYALANEISRLEQQKQILR-ERLANLERQLEELEAQL----EELESKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 759 DLLEMKNANEKTRLENQNLLIQVEEVSqtcSKSEIHNEKEKCFIKEHENLKPLLEQkeLRDRRAELILLKDSLAKSPSVK 838
Cdd:TIGR02168 359 ELEELEAELEELESRLEELEEQLETLR---SKVAQLELQIASLNNEIERLEARLER--LEDRRERLQQEIEELLKKLEEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 839 NdplssVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESY 918
Cdd:TIGR02168 434 E-----LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 919 KNLLLEYEKQSEQLDVEKER---ANNFEHRIEDLTRqlrnSTLQCETINSDNEDLLArIETLQSNaKLLEVQILEVQRAK 995
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELisvDEGYEAAIEAALG----GRLQAVVVENLNAAKKA-IAFLKQN-ELGRVTFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 996 amvDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKekkqLQKTMQELELVKKDAQQTTLMNMEIADYERLM------- 1068
Cdd:TIGR02168 583 ---GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK----ALSYLLGGVLVVDDLDNALELAKKLRPGYRIVtldgdlv 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1069 ----------KELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIK-------QLLVKTKKEL 1131
Cdd:TIGR02168 656 rpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleelsRQISALRKDL 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1132 ADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEH---LKTSAEQHQRTLSAYQQRVTALQEECRAA 1208
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEieeLEAQIEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1209 KAEQATVTSEFESYKVRVHNVLKQ----QKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSE 1284
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRledlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1285 HDTLLERHNKMLQETVSKEAELREKlcsiqsenMMMKSEHTQTVSQLTSQNEVLRNSFRDQVRHLQEEHRKTVETLQQQL 1364
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEEL--------REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDE 967
|
810
....*....|...
gi 148921645 1365 SKMEAQLFQLKNE 1377
Cdd:TIGR02168 968 EEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
230-1120 |
3.09e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 3.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 230 NEKVKHLEDTLKELESQhsilkdevtyMNNLKLKLEmdaqhiKDEFFHEREDLEFKINELLLAKEeqgcvIEKLKSELAG 309
Cdd:TIGR02168 185 RENLDRLEDILNELERQ----------LKSLERQAE------KAERYKELKAELRELELALLVLR-----LEELREELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 310 LNKQfcytVEQHNREVQSLKEQHQKEISELNETFLSDSEKEKltlmfEIQGLKEQCENLQQEKQEAILNYESLREIMEIL 389
Cdd:TIGR02168 244 LQEE----LKEAEEELEELTAELQELEEKLEELRLEVSELEE-----EIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 390 QTELgESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKN--LQEKN 467
Cdd:TIGR02168 315 ERQL-EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSkvAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 468 GVYLLS--LSQRDTMLKELEGKINSLTEEKDDFINKLKNSheEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVN 545
Cdd:TIGR02168 394 QIASLNneIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 546 ELTGGLEETLKEKDQNDQKLEKLmvqmKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVflsQKEDVILKEhiTQ 625
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV---DEGYEAAIE--AA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 626 LEKKLQLMVEEQDN-----LNKLLENE-----------------QVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQ 683
Cdd:TIGR02168 543 LGGRLQAVVVENLNaakkaIAFLKQNElgrvtflpldsikgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 684 A---VGESLAKINEEKCNLAF-----------------------QRDEKVLELEKEIKCLQEesvvQCEELKSLLRDYEQ 737
Cdd:TIGR02168 623 GgvlVVDDLDNALELAKKLRPgyrivtldgdlvrpggvitggsaKTNSSILERRREIEELEE----KIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 738 EKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSkseihnekekcfikehenlkplLEQKEL 817
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA----------------------QLSKEL 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 818 RDRRAELILLKDSLAKSPSVKndplssvKELEEKIenlekeckekeekinkiklvaVKAKKELDSSRKETQTVKEELESL 897
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEEL-------AEAEAEI---------------------EELEAQIEQLKEELKALREALDEL 808
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 898 RSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERAnnfEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETL 977
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL---SEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 978 QSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQL-QKTMQELELVKKDAQQTTl 1056
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIE- 964
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148921645 1057 mnMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKI 1120
Cdd:TIGR02168 965 --DDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
434-1235 |
1.54e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 1.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 434 ETVNRLQGENEKLLSQQELVPELENTIKNLQEKngvyllslSQRDTMLKEL-----EGKINSLTEEKDDFINKLKNSHEE 508
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSLERQ--------AEKAERYKELkaelrELELALLVLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 509 MDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKS 588
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 589 LYEENNKLSSEKKQLSRDLEVFLSQKEDviLKEHITQLEKKLQLMVEEQDNLNKLLEN---EQVQKLFVKTQLYGFLKEM 665
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELES--LEAELEELEAELEELESRLEELEEQLETlrsKVAQLELQIASLNNEIERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 666 GSEVSEDSEEKDvvNVLQAVGESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKE 745
Cdd:TIGR02168 406 EARLERLEDRRE--RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 746 LEEIQSEKEALQSDLLEMKNANE--KTRLENQNL----------LIQVEE-------------VSQTCSKSEIHNEKEKC 800
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEgvKALLKNQSGlsgilgvlseLISVDEgyeaaieaalggrLQAVVVENLNAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 801 FIKEHENLK-----------------PLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSS---VKELEEKIENLEKECK 860
Cdd:TIGR02168 564 FLKQNELGRvtflpldsikgteiqgnDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGvlvVDDLDNALELAKKLRP 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 861 EKEEKINKIKLVA-----VKAKKELDSSRKETQTvkeELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVE 935
Cdd:TIGR02168 644 GYRIVTLDGDLVRpggviTGGSAKTNSSILERRR---EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 936 KERAnnfEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKE 1015
Cdd:TIGR02168 721 LEEL---SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL----AEAEAEIEELEAQIEQ 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1016 HATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQttlmnmEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQK 1095
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLER------RIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1096 QETLQEEITSLQ---SSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSE 1172
Cdd:TIGR02168 868 IEELESELEALLnerASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148921645 1173 KHKIH-EHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRvHNVLKQQKN 1235
Cdd:TIGR02168 948 EYSLTlEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKER-YDFLTAQKE 1010
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
814-1154 |
4.21e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 4.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 814 QKELRDRRAELILLKDslakspsvkndplssvKELEEKIENLEKECKEKEEKINkiklvavKAKKELDSSRKETQTVKEE 893
Cdd:COG1196 219 KEELKELEAELLLLKL----------------RELEAELEELEAELEELEAELE-------ELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 894 LESLRSEKDQLSASMRDLIQgaesyknlllEYEKQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLAR 973
Cdd:COG1196 276 LEELELELEEAQAEEYELLA----------ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 974 IETLQSNAKLLEVQILEVQRAKAmvdkELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELvkkdaqq 1053
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALL----EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE------- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1054 ttlmnmEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELAD 1133
Cdd:COG1196 415 ------RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
330 340
....*....|....*....|.
gi 148921645 1134 SKQAETDHLILQASLKGELEA 1154
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEG 509
|
|
| GRIP |
pfam01465 |
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in ... |
1512-1555 |
8.91e-12 |
|
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi. The GRIP domain contains a completely conserved tyrosine residue. At least some of these domains have been shown to bind to GTPase Arl1, see structures in.
Pssm-ID: 460221 [Multi-domain] Cd Length: 44 Bit Score: 61.22 E-value: 8.91e-12
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 148921645 1512 AANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKL 1555
Cdd:pfam01465 1 GANLEYLKNVLLQFLESKESSERKQLLPVIATLLKFSPEEEQKI 44
|
|
| Grip |
smart00755 |
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245; |
1513-1558 |
4.57e-10 |
|
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245;
Pssm-ID: 197860 Cd Length: 46 Bit Score: 56.46 E-value: 4.57e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 148921645 1513 ANLEYLKNVLLQFIFLKPgSERERLLPVINTMLQLSPEEKGKLAAV 1558
Cdd:smart00755 2 ANFEYLKNVLLQFLTLRE-SERETLLPVISTVLQLSPEEMQKLLEV 46
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
890-1376 |
1.19e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.21 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 890 VKEELESLRSEKDQLSASMrdLIQGAESYKNLLLEYEKQ----SEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINS 965
Cdd:pfam15921 243 VEDQLEALKSESQNKIELL--LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 966 DNEDLLARIET-LQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQ-KTMQE 1043
Cdd:pfam15921 321 DLESTVSQLRSeLREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSlEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1044 LELVKKDAQQTTLM----------NMEIADYERLMKELNQKLTNKnnkiedLEQEIKIQKQKQETLqEEITSLQSSVQQY 1113
Cdd:pfam15921 401 KRLWDRDTGNSITIdhlrrelddrNMEVQRLEALLKAMKSECQGQ------MERQMAAIQGKNESL-EKVSSLTAQLEST 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1114 EEKNTKIKQLLVKTKKELADSKQAETDhlilqasLKGELEASQQQVEVYKiqlAEITSEKHKIHehLKTSAEQHQRTLSA 1193
Cdd:pfam15921 474 KEMLRKVVEELTAKKMTLESSERTVSD-------LTASLQEKERAIEATN---AEITKLRSRVD--LKLQELQHLKNEGD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1194 YQQRVtalQEECRAAKAEQATvtsefesyKVRVHNVLKQQKNKSMSQAETEGakqeREHLEMLIDqlKIKLQDSQNNLQI 1273
Cdd:pfam15921 542 HLRNV---QTECEALKLQMAE--------KDKVIEILRQQIENMTQLVGQHG----RTAGAMQVE--KAQLEKEINDRRL 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1274 NVSELQTLQSEHDTLLerhnKMLQETVSKEAELREKLCSIQSENMM----MKSEHTQTVSQ----------LTSQNEVLR 1339
Cdd:pfam15921 605 ELQEFKILKDKKDAKI----RELEARVSDLELEKVKLVNAGSERLRavkdIKQERDQLLNEvktsrnelnsLSEDYEVLK 680
|
490 500 510
....*....|....*....|....*....|....*..
gi 148921645 1340 NSFRDQvrhlQEEHRKTVETLQQQLSKMEAQLFQLKN 1376
Cdd:pfam15921 681 RNFRNK----SEEMETTTNKLKMQLKSAQSELEQTRN 713
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
403-1260 |
1.25e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 403 EFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTiknlqeKNGVYLLSLSQRDTMLK 482
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY------EGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 483 ELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYN-SELEQKVNELTGGLEETLKEKDQN 561
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 562 DQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDV-----ILKEHITQLEKKLQLMVEE 636
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 637 QDNLNKllenEQVQKLFVKTQLYGFLKEMGSEVsEDSEEKdvVNVLQAVGESLAKINEEKCNLAFQRDEKVLELEKEIKC 716
Cdd:TIGR02169 401 INELKR----ELDRLQEELQRLSEELADLNAAI-AGIEAK--INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 717 LQEEsvvqceelkslLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNL------LIQVEEVSQTCSK 790
Cdd:TIGR02169 474 LKEE-----------YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqLGSVGERYATAIE 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 791 SEIHNEKEKCFIKEHENLKPLLE-QKELRDRRAELILL-------KDSLAKSPSVKNDPLSSVKELEEKIENLEKECKEK 862
Cdd:TIGR02169 543 VAAGNRLNNVVVEDDAVAKEAIElLKRRKAGRATFLPLnkmrderRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGD 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 863 EEKINKIKLvavkAKKELDSSRKETqtvkeeLESLRSEKDQL----SASMRDLIQGAESYKNLLLEYEKQSEQLDVEKER 938
Cdd:TIGR02169 623 TLVVEDIEA----ARRLMGKYRMVT------LEGELFEKSGAmtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSS 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 939 A----NNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVD---KELEAEKLQKEQ 1011
Cdd:TIGR02169 693 LqselRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselKELEARIEELEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1012 KIKEHATTVNELE-----ELQVQLQKEKKQLQKTMQELELVKKDAQQ-TTLMNMEIADYERLMKELNQKLTNKNNKIEDL 1085
Cdd:TIGR02169 773 DLHKLEEALNDLEarlshSRIPEIQAELSKLEEEVSRIEARLREIEQkLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1086 EQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDhlilqasLKGELEASQQQVEVYKIQ 1165
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE-------LEAQIEKKRKRLSELKAK 925
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1166 LAEITSEKHKIHEHLKTSAEQHQRTLSA--YQQRVTALQEECRAAKAEQATVTSEFESYKVRVhNVLKQQKNKSMsqaet 1243
Cdd:TIGR02169 926 LEALEEELSEIEDPKGEDEEIPEEELSLedVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRL-DELKEKRAKLE----- 999
|
890
....*....|....*..
gi 148921645 1244 egakQEREHLEMLIDQL 1260
Cdd:TIGR02169 1000 ----EERKAILERIEEY 1012
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
968-1288 |
1.91e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 968 EDLLARIETlqsNAKLLEVQILEVQRAKAMVDKELEAEK----LQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQE 1043
Cdd:TIGR02168 192 EDILNELER---QLKSLERQAEKAERYKELKAELRELELallvLRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1044 LELVKKdaqqttlmnmEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQL 1123
Cdd:TIGR02168 269 LEELRL----------EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1124 LVKTKKELAdskQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKtSAEQHQRTLSAYQQRVTALQE 1203
Cdd:TIGR02168 339 LAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL-QIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1204 ECRAAKAEQATVTSEFESykvrvHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQS 1283
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEE-----AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
....*
gi 148921645 1284 EHDTL 1288
Cdd:TIGR02168 490 RLDSL 494
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
526-1116 |
2.82e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 2.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 526 LGKKVEQTIQYNsELEQKVNELTggLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSR 605
Cdd:COG1196 205 LERQAEKAERYR-ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 606 DLEVflSQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQAV 685
Cdd:COG1196 282 ELEE--AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 686 GESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKN 765
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 766 ANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRdRRAELILLKDSLAKSPSVKndplSSV 845
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR-LLLLLEAEADYEGFLEGVK----AAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 846 KELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEK------------DQLSASMRDLIQ 913
Cdd:COG1196 515 LLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagratflpldkiRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 914 GAESYKNLLLEYEKQSEQL------------DVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLL-ARIETLQSN 980
Cdd:COG1196 595 GAIGAAVDLVASDLREADAryyvlgdtllgrTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGgSRRELLAAL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 981 AKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNME 1060
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1061 IADYERLMKELNQKLTNKNNKIEDLE----------QEIKIQKQ----KQETLQEEITSLQSSVQQYEEK 1116
Cdd:COG1196 755 ELPEPPDLEELERELERLEREIEALGpvnllaieeyEELEERYDflseQREDLEEARETLEEAIEEIDRE 824
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1021-1264 |
1.26e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1021 NELEELQVQLQKEKKQLQKTMQELELVKKDAQQTtlmNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQ 1100
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAAL---ERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1101 EEITSLQSSVQQYeEKNTKIKQLLvktkkeladSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKhkihEHL 1180
Cdd:COG4942 104 EELAELLRALYRL-GRQPPLALLL---------SPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR----AEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1181 KTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVHNVLKQQKN--KSMSQAETEGAKQEREHLEMLID 1258
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEleALIARLEAEAAAAAERTPAAGFA 249
|
....*.
gi 148921645 1259 QLKIKL 1264
Cdd:COG4942 250 ALKGKL 255
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
840-1136 |
2.64e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 840 DPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKE------------------ELESLRSEK 901
Cdd:TIGR02169 160 DEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqallkekreyegyellkEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 902 DQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANN-----FEHRIEDLTRQLRNSTLQCETINSDNEDLLARIET 976
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikdlGEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 977 LQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTl 1056
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1057 mnMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQ 1136
Cdd:TIGR02169 399 --REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-648 |
3.87e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 3.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 2 KQEVEDSVTKMGDAHKELEQSHINYVKEIENLKNELMAVRSKYSEdkanLQKQLEEAMNTQLELSEQLkfqNNSEDNVKK 81
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ----LELQIASLNNEIERLEARL---ERLEDRRER 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 82 LQEEIEKIRPGFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQE---EVKELMCQI 158
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqaRLDSLERLQ 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 159 EASAKEHEAEIN-KLNELKENLVKQCEASEKNIQKKYECELENLRKA------TSNANQDNQICSILLQEN----TFVEQ 227
Cdd:TIGR02168 499 ENLEGFSEGVKAlLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGrlqavvVENLNAAKKAIAFLKQNElgrvTFLPL 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 228 VV---NEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIkdeffHEREDLEFKINelLLAKEEQGCVIEKLK 304
Cdd:TIGR02168 579 DSikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV-----LVVDDLDNALE--LAKKLRPGYRIVTLD 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 305 SELAGLnkqfCYTVEQHNREVQSLKEQHQKEISELNEtflsdsekekltlmfEIQGLKEQCENLQQEKQEAILNYESLRE 384
Cdd:TIGR02168 652 GDLVRP----GGVITGGSAKTNSSILERRREIEELEE---------------KIEELEEKIAELEKALAELRKELEELEE 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 385 IMEILQTELGEsagkISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQ 464
Cdd:TIGR02168 713 ELEQLRKELEE----LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 465 EKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKV 544
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 545 NELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQkedviLKEHIT 624
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR-----IDNLQE 943
|
650 660
....*....|....*....|....
gi 148921645 625 QLEKKLQLMVEEQDNLNKLLENEQ 648
Cdd:TIGR02168 944 RLSEEYSLTLEEAEALENKIEDDE 967
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
187-1375 |
4.98e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 58.14 E-value: 4.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 187 EKNIQKKYECELENLRKATSNANQDNQicSILLQENTFVEQVvNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEM 266
Cdd:TIGR01612 531 DQNIKAKLYKEIEAGLKESYELAKNWK--KLIHEIKKELEEE-NEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKE 607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 267 DAQHIKDEFFHEREDLEFK---------INEllLAKEEQGCVIEKLKSE-------LAGLNKQFCYTVEQHNREVQSLKE 330
Cdd:TIGR01612 608 KIKNISDKNEYIKKAIDLKkiiennnayIDE--LAKISPYQVPEHLKNKdkiystiKSELSKIYEDDIDALYNELSSIVK 685
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 331 QHQKEISElNETFLS------DSEKEKLTLMfEIQGLKEQCENLQQEKQEAIlnyESLREIMEILQTELGESAGKISQEF 404
Cdd:TIGR01612 686 ENAIDNTE-DKAKLDdlkskiDKEYDKIQNM-ETATVELHLSNIENKKNELL---DIIVEIKKHIHGEINKDLNKILEDF 760
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 405 ESMKQQQASDVHELQQklrtaftEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGVYLLSLSQRDtmlKEL 484
Cdd:TIGR01612 761 KNKEKELSNKINDYAK-------EKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKE---DEI 830
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 485 EGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYN--SELEQKVNELTGGLEET---LKEKD 559
Cdd:TIGR01612 831 FKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEISDDklNDYEKKFNDSKSLINEInksIEEEY 910
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 560 QNDQKLEKLMVQMKVLSEDKEvlsaEVKSLYEENNKLSSEKKQ------LSRDLEVFLSQKEDVILKEHITQLEK---KL 630
Cdd:TIGR01612 911 QNINTLKKVDEYIKICENTKE----SIEKFHNKQNILKEILNKnidtikESNLIEKSYKDKFDNTLIDKINELDKafkDA 986
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 631 QLMVEEQDN------LNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEE--KDVVNVLQAVGESLAKINEEKCNLAFQ 702
Cdd:TIGR01612 987 SLNDYEAKNnelikyFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDanKNIPNIEIAIHTSIYNIIDEIEKEIGK 1066
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 703 RDEKvleLEKEIKCLQEESVVQCEELKSLLRDY------EQEKVLLRKELEEIQSEKEALQ-------SDLLEMKNANEK 769
Cdd:TIGR01612 1067 NIEL---LNKEILEEAEINITNFNEIKEKLKHYnfddfgKEENIKYADEINKIKDDIKNLDqkidhhiKALEEIKKKSEN 1143
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 770 TRLENQNLLIQVEEVSQTCskseIHNEKEKCFIKEHENLKPLLEQK-----ELRDRRAELILLKDSLAKSPSVKNDPLSS 844
Cdd:TIGR01612 1144 YIDEIKAQINDLEDVADKA----ISNDDPEEIEKKIENIVTKIDKKkniydEIKKLLNEIAEIEKDKTSLEEVKGINLSY 1219
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 845 VKELE----EKIENLEKECKEKEEKINkiklvavKAKKELDSSRKETQtvkeELESLRSEKDQLSASMRDLIQGAESYKN 920
Cdd:TIGR01612 1220 GKNLGklflEKIDEEKKKSEHMIKAME-------AYIEDLDEIKEKSP----EIENEMGIEMDIKAEMETFNISHDDDKD 1288
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 921 LLLEYEKQSEQLDVEKERA------NNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSnakllevqILEVQRA 994
Cdd:TIGR01612 1289 HHIISKKHDENISDIREKSlkiiedFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYN--------ILKLNKI 1360
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 995 KAMVDKELEAEKlqkeqKIKEHATTVNEleelqvQLQKEKKQLQKTMQELELVK-KDAQQTTLMNMEIadyerlmKELNQ 1073
Cdd:TIGR01612 1361 KKIIDEVKEYTK-----EIEENNKNIKD------ELDKSEKLIKKIKDDINLEEcKSKIESTLDDKDI-------DECIK 1422
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1074 KLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNtkikQLLVKTKKEladskQAETDHLILQASLKGELE 1153
Cdd:TIGR01612 1423 KIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKS----QHILKIKKD-----NATNDHDFNINELKEHID 1493
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1154 ASQQqvevYKIQlaeitSEKHkihehlKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRvhNVLKQQ 1233
Cdd:TIGR01612 1494 KSKG----CKDE-----ADKN------AKAIEKNKELFEQYKKDVTELLNKYSALAIKNKFAKTKKDSEIII--KEIKDA 1556
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1234 KNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQN----NLQINVSELQTLQSEHDTLLERHNKMLQETVSKEAELREk 1309
Cdd:TIGR01612 1557 HKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNkaaiDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISS- 1635
|
1210 1220 1230 1240 1250 1260
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148921645 1310 lCSIQSENMMMKsehtQTVSQLTSQNEVLRnSFRDQVRHLqEEHRKTVETLQQQLSKMEAQLFQLK 1375
Cdd:TIGR01612 1636 -FSIDSQDTELK----ENGDNLNSLQEFLE-SLKDQKKNI-EDKKKELDELDSEIEKIEIDVDQHK 1694
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-771 |
5.52e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 5.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 2 KQEVEDSVTKMGDAHKELEqshiNYVKEIENLKNELMAVRSKYSEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKK 81
Cdd:TIGR02168 241 LEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 82 LQEEIEKIRPGFEEQILYLQKQLDATTDEKKETVTQLQNIIEANsqhyqKNINSLQEELLQlkaiHQEEVKELMCQIEAS 161
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL-----EELEAELEELES----RLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 162 AKEHEAEINKLNELKENLVKQCEASEKNIQKKYECELENLRKATSNANQDNQI-CSILLQENTFVEQVVNEKVKHLEDTL 240
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAeLEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 241 KELESQHSILKDEVTYMNNLKLKLEMdAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKSEL-----------AG 309
Cdd:TIGR02168 468 EELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaieaalgGR 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 310 LNKQFCYTVEQHNREVQSLKEQHQKEISELNETFLSDSEKEKLTLmfeiqglkEQCENLQQEKQEAILNYESLREIMEIL 389
Cdd:TIGR02168 547 LQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDR--------EILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 390 QTELGESAgkISQEFESMKQQQasdvHELQQKLRtAFTEKDALLETVNRLQGENEK----LLSQQELVPELENTIKNLQE 465
Cdd:TIGR02168 619 SYLLGGVL--VVDDLDNALELA----KKLRPGYR-IVTLDGDLVRPGGVITGGSAKtnssILERRREIEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 466 KNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVN 545
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 546 ELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVflsqkedviLKEHITQ 625
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA---------TERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 626 LEKKLQLMVEEQDNLNKLLENEQVQklfvktqlygfLKEMGSEVSEDSEEKDVVNvlqavgESLAKINEEKCNLafqrDE 705
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEEL-----------IEELESELEALLNERASLE------EALALLRSELEEL----SE 901
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148921645 706 KVLELEKEIKCLQEEsvvqCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTR 771
Cdd:TIGR02168 902 ELRELESKRSELRRE----LEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKI 963
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
421-1015 |
6.21e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 6.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 421 KLRTAFTEKDALLETVNRLQGENEKLLSQQElvpELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEK---DD 497
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTE---NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVkelEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 498 FINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELtggleETLKEKDQNDQKLEKLMVQMKV--- 574
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-----KELKEKAEEYIKLSEFYEEYLDelr 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 575 -LSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLS-QKEDVILKEHITQLEKKLQLMvEEQDNLNKLLENEQVQKL 652
Cdd:PRK03918 311 eIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKElEKRLEELEERHELYEEAKAKK-EELERLKKRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 653 fvktqlygflKEMGSEVSEDSEEkdvvnvlqaVGESLAKINEEKCNL---AFQRDEKVLELEK-EIKCLQEESVVQCEEL 728
Cdd:PRK03918 390 ----------EKELEELEKAKEE---------IEEEISKITARIGELkkeIKELKKAIEELKKaKGKCPVCGRELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 729 KSLLRDYEQEKVLLRKELEEIQSEKEALQSDL--LEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCfiKEHE 806
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELreLEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKA--EEYE 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 807 NLKPLL-----EQKELRDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELD 881
Cdd:PRK03918 529 KLKEKLiklkgEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 882 SSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEK--ERANNFEHRIEDLTRQLRNSTLQ 959
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEElrEEYLELSRELAGLRAELEELEKR 688
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 148921645 960 CETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKE 1015
Cdd:PRK03918 689 REEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSK 744
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
875-1116 |
6.90e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 6.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 875 KAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDvekERANNFEHRIEDLTRQLr 954
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE---AELAELEKEIAELRAEL- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 955 nstlqcetiNSDNEDLLARIETLQSNAKLLEVQIL-------EVQRAKAMVDKELEAEKlqkeQKIKEHATTVNELEELQ 1027
Cdd:COG4942 100 ---------EAQKEELAELLRALYRLGRQPPLALLlspedflDAVRRLQYLKYLAPARR----EQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1028 VQLQKEKKQLQKTMQELElvkkdAQQTTLmnmeiadyERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQ 1107
Cdd:COG4942 167 AELEAERAELEALLAELE-----EERAAL--------EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
....*....
gi 148921645 1108 SSVQQYEEK 1116
Cdd:COG4942 234 AEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
28-617 |
8.15e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 8.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 28 KEIENLKNELMAvrskySEDKANLQKQLEEamntqlELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEqiLYLQKQLDAT 107
Cdd:PRK03918 176 RRIERLEKFIKR-----TENIEELIKEKEK------ELEEVLREINEISSELPELREELEKLEKEVKE--LEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 108 TDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKaihqEEVKELMcQIEASAKEHEaeinKLNELKENLVKQCEASE 187
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE----EKVKELK-ELKEKAEEYI----KLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 188 KNIQKkYECELENLRKATSNANQDNqicsillqentfveqvvnEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMD 267
Cdd:PRK03918 314 KRLSR-LEEEINGIEERIKELEEKE------------------ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 268 AQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAGLNKQfcytVEQHNREVQSLK--------------EQHQ 333
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE----IKELKKAIEELKkakgkcpvcgreltEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 334 KEISELNETFLSDSEKEKLTLMFEIQGLKEQCENLQQE--KQEAILNYESLREIMEILQTELG----ESAGKISQEFEsm 407
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlkKESELIKLKELAEQLKELEEKLKkynlEELEKKAEEYE-- 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 408 kqqqasdvhELQQKLRTAFTEKDALLETVNRLQGENEKLLsqqelvpELENTIKNLQEKNGVYLLSLSQRD-TMLKELEG 486
Cdd:PRK03918 529 ---------KLKEKLIKLKGEIKSLKKELEKLEELKKKLA-------ELEKKLDELEEELAELLKELEELGfESVEELEE 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 487 KINSLTEEKDDFInKLKNSHEEMdnfhkkcEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEEtlKEKDQNDQKLE 566
Cdd:PRK03918 593 RLKELEPFYNEYL-ELKDAEKEL-------EREEKELKKLEEELDKAFEELAETEKRLEELRKELEE--LEKKYSEEEYE 662
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 148921645 567 KLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDV 617
Cdd:PRK03918 663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
3-630 |
8.40e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 8.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 3 QEVEDSVTKMGDAHKELEQSHINYVKEIENLKNELMAVRSkysedkanLQKQLEEAMNTQLelsEQLKFQNNSEDNVkkl 82
Cdd:pfam15921 120 QEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC--------LKEDMLEDSNTQI---EQLRKMMLSHEGV--- 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 83 QEEIEKIRPGFEE---QILYLQKQLDATTDEKKET-VTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELMCQ- 157
Cdd:pfam15921 186 LQEIRSILVDFEEasgKKIYEHDSMSTMHFRSLGSaISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQh 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 158 ---IEASAKEHEAEINKLNELKENLVKQCEAseknIQKKYECELENLRkatsnaNQDNQICSILLQENTFVEQV---VNE 231
Cdd:pfam15921 266 qdrIEQLISEHEVEITGLTEKASSARSQANS----IQSQLEIIQEQAR------NQNSMYMRQLSDLESTVSQLrseLRE 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 232 KVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEE----------QGCVIE 301
Cdd:pfam15921 336 AKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgNSITID 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 302 KLKSELAGLN---KQFCYTVEQHNREVQSLKEQHQKEISELNETFLSDSekeklTLMFEIQGLKEQCENLQQEKQEAILN 378
Cdd:pfam15921 416 HLRRELDDRNmevQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS-----SLTAQLESTKEMLRKVVEELTAKKMT 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 379 YESLREIMEILQTELGESAGKI---SQEFESMKQQQASDVHELQ----------------QKLRTAFTEKDALLETVnRL 439
Cdd:pfam15921 491 LESSERTVSDLTASLQEKERAIeatNAEITKLRSRVDLKLQELQhlknegdhlrnvqtecEALKLQMAEKDKVIEIL-RQ 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 440 QGENEKLL---------SQQELVPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSL------------------- 491
Cdd:pfam15921 570 QIENMTQLvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLelekvklvnagserlravk 649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 492 --TEEKDDFINKLKNSHEEMDNFHKKCE--------REERLILELGKKVEQTIQYNSELEQKVNELTG------------ 549
Cdd:pfam15921 650 diKQERDQLLNEVKTSRNELNSLSEDYEvlkrnfrnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsdghamkva 729
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 550 -GLEETLKEK----DQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDviLKEHIT 624
Cdd:pfam15921 730 mGMQKQITAKrgqiDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR--LKEKVA 807
|
....*.
gi 148921645 625 QLEKKL 630
Cdd:pfam15921 808 NMEVAL 813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
18-857 |
9.02e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 9.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 18 ELEQSHINYVKEIENLKNELMAVRSKYSEDKANLQKQLEEAMNTQLElseqlkfqnNSEDNVKKLQEEIEKIRPGF---E 94
Cdd:TIGR02168 210 EKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELE---------ELTAELQELEEKLEELRLEVselE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 95 EQILYLQKQLDATTDEKKETVTQLQnIIEANSQHYQKNINSLQEELLQLKAiHQEEVKELMCQIEASAKEHEAEINKLNE 174
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEAQLEELES-KLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 175 LKENLVKQCEASEkNIQKKYECELENLRKATSNANQDnqicsillqentfvEQVVNEKVKHLEDTLKELESQHSILKDEV 254
Cdd:TIGR02168 359 ELEELEAELEELE-SRLEELEEQLETLRSKVAQLELQ--------------IASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 255 TYMNNLKLKLEMDAQHIK-DEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAGLNKQFcYTVEQHNREVQSLKEQHQ 333
Cdd:TIGR02168 424 EELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL-AQLQARLDSLERLQENLE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 334 KEISELNETFLSDSEKEkltlmfEIQGLKEQCENLQQEKQEAILNYeslreIMEILQTELGESAGKISQEFESMKQQQAS 413
Cdd:TIGR02168 503 GFSEGVKALLKNQSGLS------GILGVLSELISVDEGYEAAIEAA-----LGGRLQAVVVENLNAAKKAIAFLKQNELG 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 414 DVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNL--------QEKNGVYLLSLSQRDTMLKELE 485
Cdd:TIGR02168 572 RVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvdDLDNALELAKKLRPGYRIVTLD 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 486 GKI----NSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQN 561
Cdd:TIGR02168 652 GDLvrpgGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 562 DQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDviLKEHITQLEKKLQLMVEEQDNLN 641
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE--LEAQIEQLKEELKALREALDELR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 642 KLLENEQV---QKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNvlqavgESLAKINEEKCNLAFQRDEkvleLEKEIKCLQ 718
Cdd:TIGR02168 810 AELTLLNEeaaNLRERLESLERRIAATERRLEDLEEQIEELS------EDIESLAAEIEELEELIEE----LESELEALL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 719 EESVVQCEELKSLLRDYEQEKVLLR---KELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQV--------EEVSQT 787
Cdd:TIGR02168 880 NERASLEEALALLRSELEELSEELReleSKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLseeysltlEEAEAL 959
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 148921645 788 CSKSEIHNEKEKCFIKEHE---------NLKPLLEQKELRDRRAELillkdslaksPSVKNDPLSSVKELEEKIENLEK 857
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLEnkikelgpvNLAAIEEYEELKERYDFL----------TAQKEDLTEAKETLEEAIEEIDR 1028
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
329-1116 |
2.06e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 329 KEQHQKEISELnETFLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESL-REIMEILQTELGESAGKISQeFESM 407
Cdd:TIGR02169 232 KEALERQKEAI-ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIAS-LERS 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 408 KQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEkllSQQELVPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGK 487
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE---EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 488 INSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEqtiqynsELEQKVNELTGGLEETLKEKDQNDQKLEK 567
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA-------GIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 568 LmvqmkvlSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEvflsqkedvilkehitQLEKKLQLMVEEQdnlnklLENE 647
Cdd:TIGR02169 460 L-------AADLSKYEQELYDLKEEYDRVEKELSKLQRELA----------------EAEAQARASEERV------RGGR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 648 QVQKLFVKTQ--LYGFLKEMGS---------EVSEDSEEKDVVNVLQAVGESLAKINEEK--CNLAFQRDEKVLELEKEI 714
Cdd:TIGR02169 511 AVEEVLKASIqgVHGTVAQLGSvgeryataiEVAAGNRLNNVVVEDDAVAKEAIELLKRRkaGRATFLPLNKMRDERRDL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 715 KCLQEESVVqceELKSLLRDYEQE-----KVLLRKEL--EEIQSEKE--------ALQSDLLE----MKNANEKTRLENQ 775
Cdd:TIGR02169 591 SILSEDGVI---GFAVDLVEFDPKyepafKYVFGDTLvvEDIEAARRlmgkyrmvTLEGELFEksgaMTGGSRAPRGGIL 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 776 NLLIQVEEVSQTCSK-SEIHNEKEKCFIKEHENLKPLLE--------QKELRDRRAELILLKDSLAKSPSVKNDPLSSVK 846
Cdd:TIGR02169 668 FSRSEPAELQRLRERlEGLKRELSSLQSELRRIENRLDElsqelsdaSRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 847 ELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDS-----SRKETQTVKEELESLRSEKDQLSASMRDLIQ--GAESYK 919
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQklNRLTLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 920 NLLLEYEKQSEQLDVE--KERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKam 997
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIdlKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI-- 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 998 vdKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIadyerlmkelnQKLTN 1077
Cdd:TIGR02169 906 --EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI-----------RALEP 972
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 148921645 1078 KNNK-IEDLEQEIKIQ---KQKQETLQEEITSLQSSVQQYEEK 1116
Cdd:TIGR02169 973 VNMLaIQEYEEVLKRLdelKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
279-1051 |
6.12e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 6.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 279 REDLEFKINELLLAKEEQGCVIEKLKSELAGLnkqfcytvEQHNREVQSLKEQHQKEISELNETFLSDSEKEKLTLMFEI 358
Cdd:TIGR02169 218 KEKREYEGYELLKEKEALERQKEAIERQLASL--------EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 359 QGLKEQCENLQQEKqeailnyESLREIMEILQTELGESAGKIsQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNR 438
Cdd:TIGR02169 290 LRVKEKIGELEAEI-------ASLERSIAEKERELEDAEERL-AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 439 LQGENEKLLSQQElvpELENTIKNLQEKngvyllsLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCER 518
Cdd:TIGR02169 362 LKEELEDLRAELE---EVDKEFAETRDE-------LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 519 EERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSS 598
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 599 EKKQLSRDLEVFLSQKEDVIL--KEHITQLE----KKLQLMVEEQDN---------------------LNKLLENEQVQK 651
Cdd:TIGR02169 512 VEEVLKASIQGVHGTVAQLGSvgERYATAIEvaagNRLNNVVVEDDAvakeaiellkrrkagratflpLNKMRDERRDLS 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 652 LFVKTQLYGFL-------KEMGSEVSEDSEEKDVVNVLQAVGESLAKI--------------------NEEKCNLAFQRD 704
Cdd:TIGR02169 592 ILSEDGVIGFAvdlvefdPKYEPAFKYVFGDTLVVEDIEAARRLMGKYrmvtlegelfeksgamtggsRAPRGGILFSRS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 705 --EKVLELEKEIKCLQ-EESVVQCE---------ELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRL 772
Cdd:TIGR02169 672 epAELQRLRERLEGLKrELSSLQSElrrienrldELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 773 ENQNLLIQVEEVSQTCSKSEIHNEKEKcfiKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKI 852
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLE---EALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 853 ENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQL 932
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 933 DVEKERAnnfEHRIEDLTRQLRNSTLQCETInsdnEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKeLEAEKLQKEQK 1012
Cdd:TIGR02169 909 EAQIEKK---RKRLSELKAKLEALEEELSEI----EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA-LEPVNMLAIQE 980
|
810 820 830
....*....|....*....|....*....|....*....
gi 148921645 1013 IKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDA 1051
Cdd:TIGR02169 981 YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
945-1159 |
7.02e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 7.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 945 RIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELE 1024
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1025 ELQVQLQKEKKQLQKTMQ----ELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETL- 1099
Cdd:COG4942 101 AQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALl 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148921645 1100 ---QEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQV 1159
Cdd:COG4942 181 aelEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
705-1352 |
8.04e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.20 E-value: 8.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 705 EKVLELEKEIKCLQEESVVQCEELKSL--LRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVE 782
Cdd:TIGR00618 219 ERKQVLEKELKHLREALQQTQQSHAYLtqKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAH 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 783 EVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPS------VKNDPLSSVKELEEKIENLE 856
Cdd:TIGR00618 299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSqeihirDAHEVATSIREISCQQHTLT 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 857 KECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEK 936
Cdd:TIGR00618 379 QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEK 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 937 ERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDkELEAEKLQKEQKIKEH 1016
Cdd:TIGR00618 459 IHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDID-NPGPLTRRMQRGEQTY 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1017 ATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMN---MEIADYERLMKELNQKLTNKNNKIED----LEQEI 1089
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDnrsKEDIPNLQNITVRLQDLTEKLSEAEDmlacEQHAL 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1090 KIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKE-----LADSKQAETDHLILQASLKGELEASQQQVEVYKI 1164
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQErvrehALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1165 QLAEITSEKHKIHEHLKTSAEQhqrtlsayqqrvtaLQEECRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMSQAETE 1244
Cdd:TIGR00618 698 MLAQCQTLLRELETHIEEYDRE--------------FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAH 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1245 GAKQEREHLEMLID----QLKIKLQDSQNNLQINVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMMM 1320
Cdd:TIGR00618 764 FNNNEEVTAALQTGaelsHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSAT 843
|
650 660 670
....*....|....*....|....*....|..
gi 148921645 1321 KSEHTQTVSQLTSQNEVLRNSFRDQVRHLQEE 1352
Cdd:TIGR00618 844 LGEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
814-1055 |
1.18e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 814 QKELRDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEKECKekeekinkiklvavKAKKELDSSRKETQTVKEE 893
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--------------ALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 894 LESLRSEKDQLSASMRDLIQGAesYKNLLLEYEKqseqLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLAR 973
Cdd:COG4942 92 IAELRAELEAQKEELAELLRAL--YRLGRQPPLA----LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 974 IETLQSNAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQ 1053
Cdd:COG4942 166 RAELEAERAELEALLAELEEER----AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
..
gi 148921645 1054 TT 1055
Cdd:COG4942 242 RT 243
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
875-1508 |
2.74e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 875 KAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANN----FEHRIEDLT 950
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERqleeLEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 951 RQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEK---LQKEQKIKEHATTVNELEELQ 1027
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRskvAQLELQIASLNNEIERLEARL 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1028 VQLQKEKKQLQKT----MQELELVKKDAQQTTL--MNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQE 1101
Cdd:TIGR02168 410 ERLEDRRERLQQEieelLKKLEEAELKELQAELeeLEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1102 EITSLQSSVQQYEEKNTKIKQLLvKTKKELADSKQAETDHLILQASLKGELEA----SQQQVEVYKIQLAEitsekhKIH 1177
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEGVKALL-KNQSGLSGILGVLSELISVDEGYEAAIEAalggRLQAVVVENLNAAK------KAI 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1178 EHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQ---ATVTSEFESYKVRVHNVL-----------------KQQKNK- 1236
Cdd:TIGR02168 563 AFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIegfLGVAKDLVKFDPKLRKALsyllggvlvvddldnalELAKKLr 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1237 -----------------SMSQAETEGA------KQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLERHN 1293
Cdd:TIGR02168 643 pgyrivtldgdlvrpggVITGGSAKTNssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1294 KMLQETVSKEAELREKLCSIQSENMMMKSEHtQTVSQLTSQNEVLRnSFRDQVRHLQEEHRKTVETLQQQLSKMEAQLFQ 1373
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLS-KELTELEAEIEELE-ERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1374 LKnepttRSPVSSQQSLKNLRERRNTDLPLLDMHTVTREEGEGMETTDTESVSSASTYTQSLEQLLNS---PETKLEPPL 1450
Cdd:TIGR02168 801 LR-----EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEleeLIEELESEL 875
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 148921645 1451 WHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQER 1508
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
300-620 |
3.21e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 300 IEKLKSELAGLnKQFCYTVEQHNREVQSLKEQHQKEISEL-NETFLSDSEKEKLT-----LMFEIQGLKEQCENLQQEKQ 373
Cdd:TIGR02169 683 LEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKerleeLEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 374 EAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVN-RLQGENEKLLSQQEL 452
Cdd:TIGR02169 762 ELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTlEKEYLEKEIQELQEQ 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 453 VPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEK-------DDFINKLKNSHEEMDNFHKKCEREERLILE 525
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLgdlkkerDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 526 LGKKVEQTIQYNSELEQKVNELTGGLEETLKEKD--QNDQKLEKLM-----VQMKVLSEDKEVLsAEVKSLYEENNKLSS 598
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDvqAELQRVEEEIralepVNMLAIQEYEEVL-KRLDELKEKRAKLEE 1000
|
330 340
....*....|....*....|..
gi 148921645 599 EKKQLSRDLEVFLSQKEDVILK 620
Cdd:TIGR02169 1001 ERKAILERIEEYEKKKREVFME 1022
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
687-1254 |
3.93e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 3.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 687 ESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDllEMKNA 766
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAD--ELKKA 1286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 767 NEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVK 846
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 847 ELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEElESLRSEKDQLSASMRDLIQGAESYKNllLEYE 926
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKKKADEAKKK--AEEA 1443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 927 KQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARiETLQSNAKLLEVQILEVQRAKAMVDKELEAEK 1006
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK-KAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1007 LQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKdAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLE 1086
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK-AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1087 QEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQ---AETDHLILQASLKGELEASQQQVEVYK 1163
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEElkkAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1164 IQLAE--ITSEKHKIHEHLKTSAEQHQRTLSAYQQRVTALQ--EECRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMS 1239
Cdd:PTZ00121 1682 KAEEDekKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKkaEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
570
....*....|....*
gi 148921645 1240 QAETEGAKQEREHLE 1254
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKE 1776
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
101-911 |
4.13e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 101 QKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHEAEINKLNELkENLV 180
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL-QNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 181 KQCEAS---EKNIQKKYECELENLRKAT-SNANQDNQICSILLQentfVEQVVNEKVkHLEDTLKELEsqhsiLKDEVTY 256
Cdd:pfam15921 152 HELEAAkclKEDMLEDSNTQIEQLRKMMlSHEGVLQEIRSILVD----FEEASGKKI-YEHDSMSTMH-----FRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 257 MNNLKLKLEMDAQHIKDEFFHEREDLEfkinellLAKEEQGCVIEKLkselaglnkqfcytVEQHNREVQSLKEQHQKEI 336
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQLE-------ALKSESQNKIELL--------------LQQHQDRIEQLISEHEVEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 337 SELNETfLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESlreIMEILQTELGESAGKISQEFESMKQQQASDVH 416
Cdd:pfam15921 281 TGLTEK-ASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLES---TVSQLRSELREAKRMYEDKIEELEKQLVLANS 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 417 ELQQklrtAFTEKDALLETVNRLQGENEKLLSQQElVPELENTIKNLQEKNgvyllsLSQRDTMlkelegkiNSLTeekd 496
Cdd:pfam15921 357 ELTE----ARTERDQFSQESGNLDDQLQKLLADLH-KREKELSLEKEQNKR------LWDRDTG--------NSIT---- 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 497 dfINKLKnshEEMDNFHKKCEREERLilelgkkveqtiqynseLEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLS 576
Cdd:pfam15921 414 --IDHLR---RELDDRNMEVQRLEAL-----------------LKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLE 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 577 EDKEVLSAEVKSLYEENNKLSSEKKQLSrDLEVFLSQKEDVI--LKEHITQLEKKLQLMVEEQDNLN---KLLENEQVQK 651
Cdd:pfam15921 472 STKEMLRKVVEELTAKKMTLESSERTVS-DLTASLQEKERAIeaTNAEITKLRSRVDLKLQELQHLKnegDHLRNVQTEC 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 652 LFVKTQLYGFLKEMgsevseDSEEKDVVNVLQAVGE---SLAKINEEKCNLAFQRDEKVLELeKEIKCLQEESVVQCEEL 728
Cdd:pfam15921 551 EALKLQMAEKDKVI------EILRQQIENMTQLVGQhgrTAGAMQVEKAQLEKEINDRRLEL-QEFKILKDKKDAKIREL 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 729 KSLLRDYEQEKVLL-------RKELEEIQSEKEALQSDLL----EMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNEK 797
Cdd:pfam15921 624 EARVSDLELEKVKLvnagserLRAVKDIKQERDQLLNEVKtsrnELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKS 703
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 798 EKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSpsvkndplSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAK 877
Cdd:pfam15921 704 AQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKR--------GQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLS 775
|
810 820 830
....*....|....*....|....*....|....
gi 148921645 878 KELDSSRKETQTVKEELESLRSEKDQLSASMRDL 911
Cdd:pfam15921 776 QELSTVATEKNKMAGELEVLRSQERRLKEKVANM 809
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
995-1367 |
8.46e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 50.82 E-value: 8.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 995 KAMVDKELEAEKLQKEQKIKEHATTVNELEELQVqlqkekkqLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQK 1074
Cdd:PRK10929 16 GAYAATAPDEKQITQELEQAKAAKTPAQAEIVEA--------LQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1075 LTNKNNKIEDLEQEIKIQKQKQETLQeeITSlqssvqqyeekntkikQLLvktkkELADSKQAETDHLILQASLKGELea 1154
Cdd:PRK10929 88 LNNERDEPRSVPPNMSTDALEQEILQ--VSS----------------QLL-----EKSRQAQQEQDRAREISDSLSQL-- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1155 SQQQVEVYKiQLAEITSeKHKIHEHLKTSAEQHQRtlsayqqrvTALQEECRAAKAeqatVTSEFESYKVRVHNvlKQQk 1234
Cdd:PRK10929 143 PQQQTEARR-QLNEIER-RLQTLGTPNTPLAQAQL---------TALQAESAALKA----LVDELELAQLSANN--RQE- 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1235 nksMSQAETEGAKQEREHLEMlidqlkiKLQDSQNNLQINVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSI- 1313
Cdd:PRK10929 205 ---LARLRSELAKKRSQQLDA-------YLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQAl 274
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 148921645 1314 --QSENM-MMKSEHTQTVSQLTSQNEVLrNSFRDQVRHLQEEhrkTV--ETLQQQLSKM 1367
Cdd:PRK10929 275 nqQAQRMdLIASQQRQAASQTLQVRQAL-NTLREQSQWLGVS---NAlgEALRAQVARL 329
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
698-1338 |
8.85e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 8.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 698 NLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLlrdyeqEKVLLRKELEEIQSEKEAlqsDLLEMKNANEKTRLENQNL 777
Cdd:TIGR04523 26 NIANKQDTEEKQLEKKLKTIKNELKNKEKELKNL------DKNLNKDEEKINNSNNKI---KILEQQIKDLNDKLKKNKD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 778 LIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKpllEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEK 857
Cdd:TIGR04523 97 KINKLNSDLSKINSEIKNDKEQKNKLEVELNK---LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELEN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 858 ECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKE 937
Cdd:TIGR04523 174 ELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQT 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 938 RANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQilevqrAKAMVDKELEAEKLQKEQKIKEHA 1017
Cdd:TIGR04523 254 QLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ------KEQDWNKELKSELKNQEKKLEEIQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1018 TTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQ-QTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQ 1096
Cdd:TIGR04523 328 NQISQNNKIISQLNEQISQLKKELTNSESENSEKQrELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLN 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1097 ETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEItsekhki 1176
Cdd:TIGR04523 408 QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI------- 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1177 hehlKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVhnvlkQQKNKSMSQAETEGAKQEREHLEML 1256
Cdd:TIGR04523 481 ----KQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI-----EKLESEKKEKESKISDLEDELNKDD 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1257 IDQLKIKLQDSQNNLQINVSELQtlqsEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQNE 1336
Cdd:TIGR04523 552 FELKKENLEKEIDEKNKEIEELK----QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE 627
|
..
gi 148921645 1337 VL 1338
Cdd:TIGR04523 628 KL 629
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1072-1281 |
1.15e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1072 NQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAetdhlilQASLKGE 1151
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE-------LAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1152 LEASQQQVEVYKIQLAE--ITSEKHKIHEHLK-----TSAEQHQRTLSAYQQRVTALQ---EECRAAKAEQATVTSEFES 1221
Cdd:COG4942 92 IAELRAELEAQKEELAEllRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARReqaEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1222 YKVRVHNVLKQQKNKsmsQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTL 1281
Cdd:COG4942 172 ERAELEALLAELEEE---RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
961-1226 |
1.40e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 961 ETINSDNEDLLARIETLQSNAKLLEV---QILEV-------QRAKAMVDKELEAekLQKEQKIKEHATTVNELEELQVQL 1030
Cdd:COG3206 107 EDPLGEEASREAAIERLRKNLTVEPVkgsNVIEIsytspdpELAAAVANALAEA--YLEQNLELRREEARKALEFLEEQL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1031 QKEKKQLQKTMQELELVKKDAQQTTLmNMEIADYERLMKELNQKLTNKNNKIEDLEQEIK-IQKQKQETLQEEITSLQSS 1109
Cdd:COG3206 185 PELRKELEEAEAALEEFRQKNGLVDL-SEEAKLLLQQLSELESQLAEARAELAEAEARLAaLRAQLGSGPDALPELLQSP 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1110 V-----QQYEEKNTKIKQLL----------VKTKKELADSKQAetdhliLQASLKGELEASQQQVEVYKIQLAEITSEKH 1174
Cdd:COG3206 264 ViqqlrAQLAELEAELAELSarytpnhpdvIALRAQIAALRAQ------LQQEAQRILASLEAELEALQAREASLQAQLA 337
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 148921645 1175 KIHEHLKTSAEQhQRTLSAYQQRVTALQEECRA--AKAEQATVTSEFESYKVRV 1226
Cdd:COG3206 338 QLEARLAELPEL-EAELRRLEREVEVARELYESllQRLEEARLAEALTVGNVRV 390
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1-1081 |
1.59e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.05 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1 MKQEVEDSVTKMGDAHKELEQSHINyvkEIENLKNELMAV-----RSKYSEDKANLQKQLEEAMNTQLELSEQLKFQNNS 75
Cdd:TIGR01612 701 LKSKIDKEYDKIQNMETATVELHLS---NIENKKNELLDIiveikKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKE 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 76 EDNVKKLQEEIEKIRPGFEEQIL------------YLQ-----KQLDATTDEKKETVTQLQNIIEAN----------SQH 128
Cdd:TIGR01612 778 KDELNKYKSKISEIKNHYNDQINidnikdedakqnYDKskeyiKTISIKEDEIFKIINEMKFMKDDFlnkvdkfinfENN 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 129 YQKNINSLQEELLQLKAIHQEEV---------------KELMCQIEASAKEHEAEINKLNELKENLvKQCEASEKNIQKK 193
Cdd:TIGR01612 858 CKEKIDSEHEQFAELTNKIKAEIsddklndyekkfndsKSLINEINKSIEEEYQNINTLKKVDEYI-KICENTKESIEKF 936
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 194 YECELENLRKATSNANQDNQICSILLQENTFVEQVVNEKVKHLEDTLKE--LESQHSILKDEVTYMNNLKLKLEMDAQHI 271
Cdd:TIGR01612 937 HNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLKANLGKNKENM 1016
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 272 KDEFFHEREDLEFKINELLLAKEEQGCVIE-----KLKSELAGLNKQFCYTVEQHNREVQSLKEQHQKEISELNE----- 341
Cdd:TIGR01612 1017 LYHQFDEKEKATNDIEQKIEDANKNIPNIEiaihtSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEklkhy 1096
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 342 TFLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFE-SMKQQQASDVHELQQ 420
Cdd:TIGR01612 1097 NFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADkAISNDDPEEIEKKIE 1176
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 421 KLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTikNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDF-- 498
Cdd:TIGR01612 1177 NIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGI--NLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLde 1254
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 499 ---------------------INKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSElEQKVNELTGGLEETLKE 557
Cdd:TIGR01612 1255 ikekspeienemgiemdikaeMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSE-ESDINDIKKELQKNLLD 1333
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 558 KDQNDQKLEKLMVQMK------VLSEDKEVLS--AEVKSLYEENNKlsSEKKQLSRDLEVFLSQKEDVILKEHITQLEKK 629
Cdd:TIGR01612 1334 AQKHNSDINLYLNEIAniynilKLNKIKKIIDevKEYTKEIEENNK--NIKDELDKSEKLIKKIKDDINLEECKSKIEST 1411
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 630 LqlmveEQDNLNKLLENEQVQKLFV---KTQLYGFLKemgsevSEDSEEKDVV----NVLQAVGESLAKINEEKCNLAFQ 702
Cdd:TIGR01612 1412 L-----DDKDIDECIKKIKELKNHIlseESNIDTYFK------NADENNENVLllfkNIEMADNKSQHILKIKKDNATND 1480
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 703 RDEKVLELEKEI------KCLQEESVVQCEELKSLLRDYEQE-KVLLRKELEeiqsekealqsdlLEMKNANEKTRLENQ 775
Cdd:TIGR01612 1481 HDFNINELKEHIdkskgcKDEADKNAKAIEKNKELFEQYKKDvTELLNKYSA-------------LAIKNKFAKTKKDSE 1547
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 776 NLLIQVEEVSQTC------SKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVK---NDPLSSVK 846
Cdd:TIGR01612 1548 IIIKEIKDAHKKFileaekSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKkkiNDCLKETE 1627
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 847 ELEEKIENLEKECKEKEEKINKIKLVAVKAKKE-LDSSRKETQTVKEELESLRSEkdqlsasmrdliqgAESYKNLLLEY 925
Cdd:TIGR01612 1628 SIEKKISSFSIDSQDTELKENGDNLNSLQEFLEsLKDQKKNIEDKKKELDELDSE--------------IEKIEIDVDQH 1693
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 926 EKQSEQLDVEK--ERANNFEHRIEDlTRQLRNSTLQCETINSDNEDLlariETLQSNAKLLEVQI-LEVQRAKAMVDKEL 1002
Cdd:TIGR01612 1694 KKNYEIGIIEKikEIAIANKEEIES-IKELIEPTIENLISSFNTNDL----EGIDPNEKLEEYNTeIGDIYEEFIELYNI 1768
|
1130 1140 1150 1160 1170 1180 1190
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 148921645 1003 EAEKLQKeqkIKEHATTVNELEELQVQLQKEkkqlqkTMQELELVKKdaQQTTLMNMEIADYERLMKELNQKLTNKNNK 1081
Cdd:TIGR01612 1769 IAGCLET---VSKEPITYDEIKNTRINAQNE------FLKIIEIEKK--SKSYLDDIEAKEFDRIINHFKKKLDHVNDK 1836
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
487-790 |
1.66e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 487 KINSLTEEKDDFINKLKNSHEemdnFHKkCEREERLILELGKKVEQtiqYNSELEQKVNELTGGLE-ETLKEKDQNDQKL 565
Cdd:PRK05771 10 LIVTLKSYKDEVLEALHELGV----VHI-EDLKEELSNERLRKLRS---LLTKLSEALDKLRSYLPkLNPLREEKKKVSV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 566 EKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLS---RDLEVFLSQKEDVIL---KEHITQLEKKLQlmvEEQDN 639
Cdd:PRK05771 82 KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEqeiERLEPWGNFDLDLSLllgFKYVSVFVGTVP---EDKLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 640 LNKLLENEQVqklfvktqlygflkemgSEVSEDSEEKDVVNVLQAVgESLAKINEEKCNLAFQRDEkvlelekeikcLQE 719
Cdd:PRK05771 159 ELKLESDVEN-----------------VEYISTDKGYVYVVVVVLK-ELSDEVEEELKKLGFERLE-----------LEE 209
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 148921645 720 EsvvqcEELKSLLRDYEQEkvllrkeLEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSK 790
Cdd:PRK05771 210 E-----GTPSELIREIKEE-------LEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSK 268
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
455-1173 |
1.91e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 455 ELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTI 534
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 535 QYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQlsrdlEVFLSQK 614
Cdd:pfam02463 265 EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK-----EKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 615 EDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQAVGESLAKINE 694
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 695 EKCNLAFQRDEKVLELEKEIKCLQE---ESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLL-------EMK 764
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGkltEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLlsrqkleERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 765 NANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSS 844
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 845 VKELEEKIENLEKECKEKE------------------EKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSA 906
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEidpilnlaqldkatleadEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 907 SMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEV 986
Cdd:pfam02463 660 EKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELK 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 987 QILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYER 1066
Cdd:pfam02463 740 LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1067 LMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTK------IKQLLVKTKKELADSKQAETD 1140
Cdd:pfam02463 820 EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELllkeeeLEEQKLKDELESKEEKEKEEK 899
|
730 740 750
....*....|....*....|....*....|...
gi 148921645 1141 HLILQASLKGELEASQQQVEVYKIQLAEITSEK 1173
Cdd:pfam02463 900 KELEEESQKLNLLEEKENEIEERIKEEAEILLK 932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
359-955 |
2.30e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 359 QGLKEQCENLQQEkqEAILNYESLREIMEILQTELgesagkisQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNR 438
Cdd:COG1196 216 RELKEELKELEAE--LLLLKLRELEAELEELEAEL--------EELEAELEELEAELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 439 LQGENEKLLSQQElvpELENTIKNLQEKngvyllsLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCER 518
Cdd:COG1196 286 AQAEEYELLAELA---RLEQDIARLEER-------RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 519 EERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSS 598
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 599 EKKQLSRDLEVFLSQKEDviLKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDV 678
Cdd:COG1196 436 EEEEEEEALEEAAEEEAE--LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 679 VNVLQAVGESLAKINEEKCNLAFQRDEKVLELEkeikcLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQS 758
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA-----ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 759 DLLEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNEkekcfIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVK 838
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT-----LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 839 NDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESY 918
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590
....*....|....*....|....*....|....*..
gi 148921645 919 KNLLLEYEKQSEQLDVEKERANnfEHRIEDLTRQLRN 955
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEEL--ERELERLEREIEA 778
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
872-1053 |
3.24e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 872 VAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERAN-NFEHRIEDLT 950
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEaEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 951 RQLRNSTLQCETIN--------SDNEDLLARIETLQ----SNAKLLEvqilEVQRAKAmvdkELEAEKLQKEQKIKEHAT 1018
Cdd:COG3883 90 ERARALYRSGGSVSyldvllgsESFSDFLDRLSALSkiadADADLLE----ELKADKA----ELEAKKAELEAKLAELEA 161
|
170 180 190
....*....|....*....|....*....|....*
gi 148921645 1019 TVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQ 1053
Cdd:COG3883 162 LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEA 196
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
515-1070 |
3.67e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 515 KCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENN 594
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 595 KLSSEKKQLS------RDLEVFLSQKEDVI--LKEHITQLEKK------LQLMVEEQDNLNKLLENeqvqklfVKTQLYG 660
Cdd:PRK03918 239 EIEELEKELEslegskRKLEEKIRELEERIeeLKKEIEELEEKvkelkeLKEKAEEYIKLSEFYEE-------YLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 661 FLKEMGSEVSEDSEEKDVVNVLQAVGESLAKINEEKCNLafqrDEKVLELEKEIKCLQE--ESVVQCEELKSLLRDYEQE 738
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL----EKRLEELEERHELYEEakAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 739 KvlLRKELEEIQSEKEALQ---SDLLEMKNANEKTRLENQNLLIQVEEVSQTCS--KSEIHNEKEKCFIKE-HENLKPLL 812
Cdd:PRK03918 388 K--LEKELEELEKAKEEIEeeiSKITARIGELKKEIKELKKAIEELKKAKGKCPvcGRELTEEHRKELLEEyTAELKRIE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 813 EQKE-----LRDRRAELILLKDSLAKSP--SVKNDPLSSVKELEEKIENLEKECKEKEEKINKiklvavKAKKELDSSRK 885
Cdd:PRK03918 466 KELKeieekERKLRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNLEELEKKAEEYE------KLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 886 ETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQ--SEQLDVEKE------------RANNFEHRIEDLTR 951
Cdd:PRK03918 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfESVEELEERlkelepfyneylELKDAEKELEREEK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 952 QLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDK-ELEAEKLQKEQKIKEHATTVNELEELQVQL 1030
Cdd:PRK03918 620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYlELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 148921645 1031 QKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKE 1070
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
973-1211 |
4.14e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 4.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 973 RIETLQSNAKLLEvQILEV-QRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDA 1051
Cdd:COG4913 243 ALEDAREQIELLE-PIRELaERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1052 QQttlmnmEIADYERlmkelnQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEL 1131
Cdd:COG4913 322 RE------ELDELEA------QIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1132 ADSKQAETDHLILQASLKGELEASQQQVevyKIQLAEITSEkhkihehlKTSAEQHQRTLSAYQQRV-TALQEECRAAKA 1210
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAALRDL---RRELRELEAE--------IASLERRKSNIPARLLALrDALAEALGLDEA 458
|
.
gi 148921645 1211 E 1211
Cdd:COG4913 459 E 459
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
320-645 |
5.37e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.97 E-value: 5.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 320 QHNREVQSLKEQHQKEISElnETFLSDSEKEKLTLMfeIQGLKEQCENLQQEKQEAILNY-------ESLREIMEILQTE 392
Cdd:PLN02939 103 QRDEAIAAIDNEQQTNSKD--GEQLSDFQLEDLVGM--IQNAEKNILLLNQARLQALEDLekiltekEALQGKINILEMR 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 393 LGESAGKI---SQE---FESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEK 466
Cdd:PLN02939 179 LSETDARIklaAQEkihVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEER 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 467 NGVYLLSLSQRDTMLKELEGKINSLTEEKddfinkLKNSHEEMDNFHKKCEREERLILELGKKVEQ---TIQYNSELEQK 543
Cdd:PLN02939 259 VFKLEKERSLLDASLRELESKFIVAQEDV------SKLSPLQYDCWWEKVENLQDLLDRATNQVEKaalVLDQNQDLRDK 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 544 VNELtgglEETLKEKDQNDQKLEKLmvqmkvlsedkEVLSAEVKSLyEENNKLSSEkkqlsrdlevflsqkedvilkEHI 623
Cdd:PLN02939 333 VDKL----EASLKEANVSKFSSYKV-----------ELLQQKLKLL-EERLQASDH---------------------EIH 375
|
330 340
....*....|....*....|..
gi 148921645 624 TQLEKKLQLMVEEQDNLNKLLE 645
Cdd:PLN02939 376 SYIQLYQESIKEFQDTLSKLKE 397
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
635-1206 |
6.22e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 6.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 635 EEQDNLNKLLENEQVQKlFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQAVGESLAKINEEKCNLAFQRDEKVLELEK-- 712
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKad 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 713 EIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQsdllEMKNANEKTRLENQNLLIQVEEVSQTCSKSE 792
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE----EKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 793 IHNEKEKCFIKEHENLKPLLEQKELRD---RRAELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINKI 869
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADeakKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 870 KLVAVKAKKELDSSRKETQTVKEELESLR--SEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANNFEHRIE 947
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 948 DLTRQLRNSTlQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMvDKELEAEKLQKEQKIKEHATTVNELEELQ 1027
Cdd:PTZ00121 1555 EELKKAEEKK-KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE-EKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1028 VQLQKEKKQLQKTMQELELVKKDAQQTTLMNmeiadyerlmKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEitslq 1107
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKA----------AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE----- 1697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1108 ssvQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQH 1187
Cdd:PTZ00121 1698 ---AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
570
....*....|....*....
gi 148921645 1188 QRTLSAYQQRVTALQEECR 1206
Cdd:PTZ00121 1775 KEKEAVIEEELDEEDEKRR 1793
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
389-1169 |
6.61e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 6.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 389 LQTELGESagkiSQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRlqgENEkllSQQELVPELENTIKNLQEKNG 468
Cdd:pfam15921 90 LQRRLNES----NELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRR---ESQ---SQEDLRNQLQNTVHELEAAKC 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 469 VYLLSLSQRDTMLKEL-------EG---KINSLTEEKDDFINKLKNSHEEMDNFHKKcereerlilELGKKVEQTIQyns 538
Cdd:pfam15921 160 LKEDMLEDSNTQIEQLrkmmlshEGvlqEIRSILVDFEEASGKKIYEHDSMSTMHFR---------SLGSAISKILR--- 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 539 ELEQKVNELTGGL------EETLKEKDQNdqKLEKLMVQ----MKVLSEDKEVlsaEVKSLYEENNKLSSEKKQLSRDLE 608
Cdd:pfam15921 228 ELDTEISYLKGRIfpvedqLEALKSESQN--KIELLLQQhqdrIEQLISEHEV---EITGLTEKASSARSQANSIQSQLE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 609 VFLSQ--KEDVILKEHITQLEKKLQLMVEEQDNLNKLLEN--EQVQKLFVKTQlygflkemgSEVSEDSEEKDVVNvlQA 684
Cdd:pfam15921 303 IIQEQarNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDkiEELEKQLVLAN---------SELTEARTERDQFS--QE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 685 VGESLAKINEEKCNLafQRDEKVLELEKEikclQEESVVQCEELKSLLRDYeqekvlLRKELEEIQSEKEALQSDLLEMK 764
Cdd:pfam15921 372 SGNLDDQLQKLLADL--HKREKELSLEKE----QNKRLWDRDTGNSITIDH------LRRELDDRNMEVQRLEALLKAMK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 765 NANEKtRLENQNLLIQVEEVSQtcskseihnEKEKCFIKEHENLKPLLeqkelRDRRAELILLKDSLAKSPSVKNDPLSS 844
Cdd:pfam15921 440 SECQG-QMERQMAAIQGKNESL---------EKVSSLTAQLESTKEML-----RKVVEELTAKKMTLESSERTVSDLTAS 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 845 VKELEEKIENLEKECKEKEEKINkiklVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLE 924
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVD----LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 925 YEKQSEQLDVEKERannFEHRIEDltrqlRNSTLQCETINSDNEDllARIETLQSNAKLLEVQILEVQRAKAMVDKELEA 1004
Cdd:pfam15921 581 HGRTAGAMQVEKAQ---LEKEIND-----RRLELQEFKILKDKKD--AKIRELEARVSDLELEKVKLVNAGSERLRAVKD 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1005 EKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVkkdaqqTTLMNMEiadyerlMKELNQKLTNKNNKIED 1084
Cdd:pfam15921 651 IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETT------TNKLKMQ-------LKSAQSELEQTRNTLKS 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1085 LE------QEIKIQKQKQETLQE-EITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQ 1157
Cdd:pfam15921 718 MEgsdghaMKVAMGMQKQITAKRgQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRS 797
|
810
....*....|..
gi 148921645 1158 QVEVYKIQLAEI 1169
Cdd:pfam15921 798 QERRLKEKVANM 809
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
968-1212 |
7.05e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.60 E-value: 7.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 968 EDLLARIETLQSNaKLLEVQilevqraKAMVDKELEA--EKLQKEQKIKEhattvnELEELQVQLQKEKKQLQKTMQELE 1045
Cdd:PRK11281 39 ADVQAQLDALNKQ-KLLEAE-------DKLVQQDLEQtlALLDKIDRQKE------ETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1046 LVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDL----EQEIKIQKQKqETLQEEITSLQSSVQQyeekntkIK 1121
Cdd:PRK11281 105 ALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLaeynSQLVSLQTQP-ERAQAALYANSQRLQQ-------IR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1122 QLLVKTK---KELADSKQ----AETDHLILQASL-KGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQ-HQRTLS 1192
Cdd:PRK11281 177 NLLKGGKvggKALRPSQRvllqAEQALLNAQNDLqRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAiNSKRLT 256
|
250 260
....*....|....*....|
gi 148921645 1193 AYQQRVTALQEECRAAKAEQ 1212
Cdd:PRK11281 257 LSEKTVQEAQSQDEAARIQA 276
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
987-1225 |
7.11e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 7.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 987 QILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTtlmNMEIADYER 1066
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL---EKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1067 LMKELNQKLTNKNNKIEDLEQEIKIQ-KQKQETLQEEITSLQsSVQQYEEKNTKIKQLLVKTKKELADSKQAetdhlilQ 1145
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLAlLLSPEDFLDAVRRLQ-YLKYLAPARREQAEELRADLAELAALRAE-------L 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1146 ASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYQQRVTALQE-----ECRAAKAEQATVTSEFE 1220
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAliarlEAEAAAAAERTPAAGFA 249
|
....*
gi 148921645 1221 SYKVR 1225
Cdd:COG4942 250 ALKGK 254
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
49-905 |
7.31e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 7.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 49 ANLQKQLEEAMNTQLELSEQLKfQNNSEDNVKKLQEEIEKIRpgFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQH 128
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLA-ELIIDLEELKLQELKLKEQ--AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 129 YQKNINSLQEELLQLKAIhQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQCEASEKNIQKKYECELENLRKATSNA 208
Cdd:pfam02463 242 LQELLRDEQEEIESSKQE-IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 209 NQDNQICSILLQENTFVEQVVNEKvkhledtlKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINE 288
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKEL--------KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 289 LLLAKEEQGCVIEKLKSELAGLNKQFCYTVEQHNREVQSLKEQHQKEISELNETFLSDSEKEKLTLMFEIQGLKEQCENL 368
Cdd:pfam02463 393 KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 369 QQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLS 448
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 449 QQELVPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKK---CEREERLILE 525
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDkraKVVEGILKDT 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 526 LGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEK-KQLS 604
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQReKEEL 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 605 RDLEVFLSQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQA 684
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 685 VGESLAKINEEKCNLafqrdEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMK 764
Cdd:pfam02463 793 EEKLKAQEEELRALE-----EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 765 NANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSS 844
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 148921645 845 VKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLS 905
Cdd:pfam02463 948 KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLI 1008
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
230-651 |
7.46e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 7.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 230 NEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKdEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAG 309
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK-KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 310 LNKQFCYTVEQHNREVQSL---KEQHQKEISELNETFLSDSEKEKltlmfEIQGLKEQCENLQQEKQEAILNY-----ES 381
Cdd:TIGR04523 244 KTTEISNTQTQLNQLKDEQnkiKKQLSEKQKELEQNNKKIKELEK-----QLNQLKSEISDLNNQKEQDWNKElkselKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 382 LREIMEILQTELGESAGKISQEFESMKQ--QQASDVHELQQKLRTAFTEKDALLETVNR-LQGENEKLLSQQELVPELEN 458
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQlkKELTNSESENSEKQRELEEKQNEIEKLKKeNQSYKQEIKNLESQINDLES 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 459 TIKNLQEKNgvyllslSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNS 538
Cdd:TIGR04523 399 KIQNQEKLN-------QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLK 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 539 ELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSR---DLEVFLSQKE 615
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESkisDLEDELNKDD 551
|
410 420 430
....*....|....*....|....*....|....*.
gi 148921645 616 DVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQK 651
Cdd:TIGR04523 552 FELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEK 587
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
879-1112 |
9.33e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 9.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 879 ELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLrnstl 958
Cdd:COG4913 655 EYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL----- 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 959 qcetinsdnEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKeleaeklqKEQKIKEHATtvNELEELQVQLQKEKKQLQ 1038
Cdd:COG4913 730 ---------DELQDRLEAAEDLARLELRALLEERFAAALGDA--------VERELRENLE--ERIDALRARLNRAEEELE 790
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 148921645 1039 KTMQE-LELVKKDAQQTTLMNMEIADYERLMKELnqkltnKNNKIEDLEQEIKIQKQKQETlqEEITSLQSSVQQ 1112
Cdd:COG4913 791 RAMRAfNREWPAETADLDADLESLPEYLALLDRL------EEDGLPEYEERFKELLNENSI--EFVADLLSKLRR 857
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
942-1284 |
1.06e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 942 FEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSN-AKLLEVQILEVQRAKAMVD---KELEAEKLQKEQKIKEHA 1017
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRErEKAERYQALLKEKREYEGYellKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1018 TTVNELEELQVQLQKEKKQLQKTMQELELVKKdaQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQE 1097
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNK--KIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1098 TLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEkhkiH 1177
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE----I 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1178 EHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVHnvlKQQKNKSMSQAETEGAKQEREHLEMLI 1257
Cdd:TIGR02169 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK---KQEWKLEQLAADLSKYEQELYDLKEEY 478
|
330 340
....*....|....*....|....*..
gi 148921645 1258 DQLKIKLQDSQNNLQINVSELQTLQSE 1284
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEAQARASEER 505
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
471-761 |
1.15e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 471 LLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKkcereerLILELGKKVEQTIQynsELEQKVNELtgg 550
Cdd:PHA02562 159 LLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK-------NIEEQRKKNGENIA---RKQNKYDEL--- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 551 leetLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVF------------LSQKEDVI 618
Cdd:PHA02562 226 ----VEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYekggvcptctqqISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 619 --LKEHITQLEKKLQLMVEEQDNLNKLleneqvqklfvktqlygflkemgseVSEDSEEKDVVNVLQAvgeslaKINEEK 696
Cdd:PHA02562 302 tkIKDKLKELQHSLEKLDTAIDELEEI-------------------------MDEFNEQSKKLLELKN------KISTNK 350
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148921645 697 CNLAFQRDeKVLELEKEIKCLQEESVVQCEELKSLlrdyEQEKVLLRKELEEIQSEKEALQ--SDLL 761
Cdd:PHA02562 351 QSLITLVD-KAKKVKAAIEELQAEFVDNAEELAKL----QDELDKIVKTKSELVKEKYHRGivTDLL 412
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
373-1291 |
1.32e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 373 QEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQklrTAFTEKDALLETVNRLQGENEKLLSQQEL 452
Cdd:pfam15921 109 RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEA---AKCLKEDMLEDSNTQIEQLRKMMLSHEGV 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 453 VPELENTIKNLQEKNGVYLLSLSQRDTM-LKELEGKINSLTEEKDDFINKLKNSHEEMDNFHK--KCEREERLILELGKK 529
Cdd:pfam15921 186 LQEIRSILVDFEEASGKKIYEHDSMSTMhFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEalKSESQNKIELLLQQH 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 530 VEQTIQYNSELEQkvnELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEV 609
Cdd:pfam15921 266 QDRIEQLISEHEV---EITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYED 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 610 FLSQ--KEDVILKEHITQLEKKLQLMVEEQDNLNkllenEQVQKLFvkTQLYGFLKEMGSEVSEDSEEKDVVNVLQAVGE 687
Cdd:pfam15921 343 KIEEleKQLVLANSELTEARTERDQFSQESGNLD-----DQLQKLL--ADLHKREKELSLEKEQNKRLWDRDTGNSITID 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 688 SLAKINEEKcNLAFQRDEKVL---------ELEKEIKCLQEESVvQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQS 758
Cdd:pfam15921 416 HLRRELDDR-NMEVQRLEALLkamksecqgQMERQMAAIQGKNE-SLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLES 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 759 dllemknaNEKTrLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVk 838
Cdd:pfam15921 494 --------SERT-VSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKV- 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 839 ndplssVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLiqGAESY 918
Cdd:pfam15921 564 ------IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL--ELEKV 635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 919 KNLLLEYEKQSEQLDVEKERannfehriEDLTRQLRNSTLQCETINSDNEdLLARIETLQSNAKLLEVQILEVQRAKAMV 998
Cdd:pfam15921 636 KLVNAGSERLRAVKDIKQER--------DQLLNEVKTSRNELNSLSEDYE-VLKRNFRNKSEEMETTTNKLKMQLKSAQS 706
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 999 DKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEK-KQLQKTMQELELVKKDAQQTTLMNMEiaDYERLMKELNQKLTN 1077
Cdd:pfam15921 707 ELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQiDALQSKIQFLEEAMTNANKEKHFLKE--EKNKLSQELSTVATE 784
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1078 KNNkiedLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEladSKQAETDHLILQASLKGELEASQQ 1157
Cdd:pfam15921 785 KNK----MAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE---SVRLKLQHTLDVKELQGPGYTSNS 857
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1158 QVEVYKIQLAEITSEKHKIhehlkTSAEQHQRTLSAYQQRVTALQEEcraakaeqatVTSEFESYKVRVHNVLKQQKNKS 1237
Cdd:pfam15921 858 SMKPRLLQPASFTRTHSNV-----PSSQSTASFLSHHSRKTNALKED----------PTRDLKQLLQELRSVINEEPTVQ 922
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....
gi 148921645 1238 MSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLER 1291
Cdd:pfam15921 923 LSKAEDKGRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSSETCSR 976
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1000-1197 |
1.66e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1000 KELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKtMQELELVKKDAQQTTlmnmeiADYERLMKELnQKLTNKN 1079
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQR-LAEYSWDEIDVASAE------REIAELEAEL-ERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1080 NKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLL--VKTKKELADSKQAETDHLILQASLKGELEAsqq 1157
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdeLQDRLEAAEDLARLELRALLEERFAAALGD--- 761
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 148921645 1158 qvEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYQQR 1197
Cdd:COG4913 762 --AVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
982-1194 |
1.89e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 982 KLLEVQILEVQRAKamvdKELEAEKLQKE----QKIKEHATTVNELEELQVQLQKEKKQLQKtmQELELVKKDAQQttlm 1057
Cdd:PRK05771 24 ALHELGVVHIEDLK----EELSNERLRKLrsllTKLSEALDKLRSYLPKLNPLREEKKKVSV--KSLEELIKDVEE---- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1058 nmEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQK-----------------------QKQETLQEEITSLQSSVQQYE 1114
Cdd:PRK05771 94 --ELEKIEKEIKELEEEISELENEIKELEQEIERLEpwgnfdldlslllgfkyvsvfvgTVPEDKLEELKLESDVENVEY 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1115 EKNTKIKQ-LLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSA 1193
Cdd:PRK05771 172 ISTDKGYVyVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLA 251
|
.
gi 148921645 1194 Y 1194
Cdd:PRK05771 252 L 252
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
499-1130 |
2.10e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 499 INKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKdqndQKLEKLMVQMKVLSED 578
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 579 KEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDVilkEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQL 658
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL---KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 659 YGFLKEMGSEVSEDSEEKDVVNVLQAVGESLAKINE--EKCNLAFQRDEKVLELEKEIKCLQEEsvvqceELKSLLRDYE 736
Cdd:PRK03918 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEErhELYEEAKAKKEELERLKKRLTGLTPE------KLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 737 QEKVLLRKELEEIQSEKEALQSDLLEMKNANEKtrlenqnlLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKE 816
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKAIEE--------LKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 817 -----LRDRRAELILLKDSLAKSP--SVKNDPLSSVKELEEKIENLEkeckekeekinkiklvavkaKKELDSSRKETQT 889
Cdd:PRK03918 470 eieekERKLRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYN--------------------LEELEKKAEEYEK 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 890 VKEELESLRSEkdqlsasmrdlIQGAESYKNLLLEYEKQSEQLDVEKERAnnfEHRIEDLTRQLRNSTLQCEtinsdnED 969
Cdd:PRK03918 530 LKEKLIKLKGE-----------IKSLKKELEKLEELKKKLAELEKKLDEL---EEELAELLKELEELGFESV------EE 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 970 LLARIETLQSNAKLLeVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQvqlqKEKKQLQKTMQELELVKK 1049
Cdd:PRK03918 590 LEERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELR----KELEELEKKYSEEEYEEL 664
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1050 DAQQTTLmNMEIADYERLMKELNQKLTNKNNKIEDLEQEikiqKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKK 1129
Cdd:PRK03918 665 REEYLEL-SRELAGLRAELEELEKRREEIKKTLEKLKEE----LEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
.
gi 148921645 1130 E 1130
Cdd:PRK03918 740 R 740
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
366-628 |
2.39e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.22 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 366 ENLQQEKQEAILNYESlreimEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEK 445
Cdd:COG5022 829 EKKLRETEEVEFSLKA-----EVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLE 903
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 446 LLSQ-QELVPELENtikNLQEKNGVyllsLSQRDTMLKELEGKIN-----SLTEEKDDFINKLknsHEEMDNFHKKCERE 519
Cdd:COG5022 904 LESEiIELKKSLSS---DLIENLEF----KTELIARLKKLLNNIDleegpSIEYVKLPELNKL---HEVESKLKETSEEY 973
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 520 ERLILELGKKVEQTIQYNSELEQKVNELTGG------LEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEvKSLYEEN 593
Cdd:COG5022 974 EDLLKKSTILVREGNKANSELKNFKKELAELskqygaLQESTKQLKELPVEVAELQSASKIISSESTELSIL-KPLQKLK 1052
|
250 260 270
....*....|....*....|....*....|....*.
gi 148921645 594 NKLSSEKKQLSRDLEVFLSQKED-VILKEHITQLEK 628
Cdd:COG5022 1053 GLLLLENNQLQARYKALKLRRENsLLDDKQLYQLES 1088
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
399-1317 |
2.74e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 399 KISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKngvyLLSLSQRD 478
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNR----LKEIEHNL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 479 TMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQtiqynsELEQKVNELTGGLEETLKEK 558
Cdd:TIGR00606 262 SKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVR------EKERELVDCQRELEKLNKER 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 559 DQNDQKLEKLMVQMKVLSEDKEVLSAEVKS--LYEENNKLSSEKKQLSRDLEVFLSQKEDVILKEHITQLEKKL--QLMV 634
Cdd:TIGR00606 336 RLLNQEKTELLVEQGRLQLQADRHQEHIRArdSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTaaQLCA 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 635 EEQDNLNklLENEQVQKLFVKTQLYGFLKEMGSEV--SEDSEEKDVVNVLQAVGESLAKIneekcnlaFQRDEKVLELEK 712
Cdd:TIGR00606 416 DLQSKER--LKQEQADEIRDEKKGLGRTIELKKEIleKKQEELKFVIKELQQLEGSSDRI--------LELDQELRKAER 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 713 EIKCLQEESVVQCEE-----LKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQT 787
Cdd:TIGR00606 486 ELSKAEKNSLTETLKkevksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 788 CSKSEIHNEKEKCFIKEHEnlkpllEQKELRDRRAELILlkdSLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKIN 867
Cdd:TIGR00606 566 LGYFPNKKQLEDWLHSKSK------EINQTRDRLAKLNK---ELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQD 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 868 KIKlvavkakkELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLdveKERANNFEHRIE 947
Cdd:TIGR00606 637 EES--------DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL---QEFISDLQSKLR 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 948 DLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQ 1027
Cdd:TIGR00606 706 LAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1028 VQLQKEKKQLQKTMQELELVKKDAQQTTlmNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQ 1107
Cdd:TIGR00606 786 VCLTDVTIMERFQMELKDVERKIAQQAA--KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1108 SSV---------------------QQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQL 1166
Cdd:TIGR00606 864 SKTnelkseklqigtnlqrrqqfeEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV 943
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1167 AEITSEKHKIHEHLKTSAEQHQRTLSAYQQR-------VTALQEECRAAKA----EQATVTSEFESYKVRvHNVLKQQKN 1235
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQketelntVNAQLEECEKHQEkineDMRLMRQDIDTQKIQ-ERWLQDNLT 1022
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1236 KSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINvsELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQS 1315
Cdd:TIGR00606 1023 LRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEE--NIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAE 1100
|
..
gi 148921645 1316 EN 1317
Cdd:TIGR00606 1101 EK 1102
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
133-439 |
3.95e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 133 INSLQEELLQLKAIHQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQCEASEKNIQKK---------YECELENLRK 203
Cdd:TIGR02169 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELkelearieeLEEDLHKLEE 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 204 ATSN--ANQDNQICSILLQENTFVEQVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEmDAQHIKDEFFHERED 281
Cdd:TIGR02169 780 ALNDleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI-DLKEQIKSIEKEIEN 858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 282 LEFKINELLLAKEEQGCVIEKLKSELAGLNKQfcytveqhNREVQSLKEQHQKEISELNETfLSDSEKEKLTLMFEIQGL 361
Cdd:TIGR02169 859 LNGKKEELEEELEELEAALRDLESRLGDLKKE--------RDELEAQLRELERKIEELEAQ-IEKKRKRLSELKAKLEAL 929
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 362 KEQCENLQQEKQE------AILNYESLREIMEILQTE---LGESAGKISQEFESMKQQQasdvHELQQKLRTAFTEKDAL 432
Cdd:TIGR02169 930 EEELSEIEDPKGEdeeipeEELSLEDVQAELQRVEEEiraLEPVNMLAIQEYEEVLKRL----DELKEKRAKLEEERKAI 1005
|
....*..
gi 148921645 433 LETVNRL 439
Cdd:TIGR02169 1006 LERIEEY 1012
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1060-1249 |
4.12e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1060 EIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQssvQQYEEKNTKIKQLLVKTKKELADSKQAEt 1139
Cdd:COG3883 31 ELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---AEIEERREELGERARALYRSGGSVSYLD- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1140 dhLILQAS----LKGELEASQQQVEVYKIQLAEITSEKHKIhEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATV 1215
Cdd:COG3883 107 --VLLGSEsfsdFLDRLSALSKIADADADLLEELKADKAEL-EAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170 180 190
....*....|....*....|....*....|....
gi 148921645 1216 TSEFESYKVRVHNVLKQQKNKSMSQAETEGAKQE 1249
Cdd:COG3883 184 LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
380-682 |
5.48e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 5.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 380 ESLREIMEILQtELG-----ESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLqgeneKLLSQQELVP 454
Cdd:PRK05771 16 SYKDEVLEALH-ELGvvhieDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKV-----SVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 455 ELENTIKNLQEKngvyllslsqrdtmLKELEGKINSLTEEKDDfINKLKNSHEEMDNFH---KKCEREERLILELGK-KV 530
Cdd:PRK05771 90 DVEEELEKIEKE--------------IKELEEEISELENEIKE-LEQEIERLEPWGNFDldlSLLLGFKYVSVFVGTvPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 531 EQTIQYNSELEQKVNELTGGLEE-------TLKEKDQNDQK-LEKLMVQMKVLSEdKEVLSAEVKSLYEENNKLSSEKKQ 602
Cdd:PRK05771 155 DKLEELKLESDVENVEYISTDKGyvyvvvvVLKELSDEVEEeLKKLGFERLELEE-EGTPSELIREIKEELEEIEKERES 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 603 LSRDLEVFLSQKEDVIL--KEHITQLEKKLQLM-----------------VEEQDNLNKLLENEQVQKLFVktqlygflk 663
Cdd:PRK05771 234 LLEELKELAKKYLEELLalYEYLEIELERAEALskflktdktfaiegwvpEDRVKKLKELIDKATGGSAYV--------- 304
|
330
....*....|....*....
gi 148921645 664 emgsEVSEDSEEKDVVNVL 682
Cdd:PRK05771 305 ----EFVEPDEEEEEVPTK 319
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1056-1261 |
5.74e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 5.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1056 LMNMEIADYERLMKELNQK----LTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEL 1131
Cdd:PHA02562 192 HIQQQIKTYNKNIEEQRKKngenIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1132 AD----------------SKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHE------HLKTSAEQHQR 1189
Cdd:PHA02562 272 EQfqkvikmyekggvcptCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEqskkllELKNKISTNKQ 351
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 148921645 1190 TLSAYQQRVTALQEECRAAKAEQATVTSEFESYkvrVHNVLKQQKNKSmsqaeteGAKQEREHLEMLIDQLK 1261
Cdd:PHA02562 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELAKL---QDELDKIVKTKS-------ELVKEKYHRGIVTDLLK 413
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
891-1149 |
6.64e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 891 KEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQ--------LDVEKERANNFEHRIEDLTRQLRNstlqcet 962
Cdd:PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGEniarkqnkYDELVEEAKTIKAEIEELTDELLN------- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 963 INSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQkeQKIKEHATTVNELEELQVQLQKEKKQLQKTMQ 1042
Cdd:PHA02562 246 LVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCT--QQISEGPDRITKIKDKLKELQHSLEKLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1043 ELELvkkdaqqttLMNmEIADYERLMKELNQKLTNKNNKIEDLEQEIKiqkqkqeTLQEEITSLQSSVQQYEEKNTKIKQ 1122
Cdd:PHA02562 324 ELEE---------IMD-EFNEQSKKLLELKNKISTNKQSLITLVDKAK-------KVKAAIEELQAEFVDNAEELAKLQD 386
|
250 260
....*....|....*....|....*..
gi 148921645 1123 LLVKTKKELADSKQAETDHLILQASLK 1149
Cdd:PHA02562 387 ELDKIVKTKSELVKEKYHRGIVTDLLK 413
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
888-1045 |
9.64e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 9.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 888 QTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERAnnfEHRIEDLTRQLRNSTLQCETINSDN 967
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL---ELEIEEVEARIKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 968 E--DLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELE 1045
Cdd:COG1579 90 EyeALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
231-428 |
1.04e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 231 EKVKHLEDTLKELESQHSILKDEVTymnnlKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEqgcvIEKLKSELAGL 310
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLE-----ALEAELDALQERREALQRLAEYSWDEIDVASAERE----IAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 311 nkqfcytvEQHNREVQSLKEQHQKEISELNETflsdsEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQ 390
Cdd:COG4913 681 --------DASSDDLAALEEQLEELEAELEEL-----EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 148921645 391 TELGE----------SAGKISQEFESMKQQQASDVHELQQKLRTAFTE 428
Cdd:COG4913 748 RALLEerfaaalgdaVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
878-1308 |
1.17e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 878 KELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANnFEHRIEDLTRQLrnst 957
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA-LEAELAELPERL---- 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 958 lqcetinsdnEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQL 1037
Cdd:COG4717 149 ----------EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1038 QktmQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTnkNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKN 1117
Cdd:COG4717 219 Q---EELEELEEELEQLENELEAAALEERLKEARLLLLI--AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1118 TKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLktSAEQHQRTLSAYQQR 1197
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA--EELEEELQLEELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1198 VTALQEECRAAKAEQ----ATVTSEFESYKVRVhNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQI 1273
Cdd:COG4717 372 IAALLAEAGVEDEEElraaLEQAEEYQELKEEL-EELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEE 450
|
410 420 430
....*....|....*....|....*....|....*..
gi 148921645 1274 NVSELQTLQSEHDTLLERHN--KMLQETVSKEAELRE 1308
Cdd:COG4717 451 LREELAELEAELEQLEEDGElaELLQELEELKAELRE 487
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
499-1190 |
1.25e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 499 INKLKNSHEEMDNFHKKCEREERLILELGKKV--------EQTIQYNSELEQKVNELTGGLEeTLKEKDQNDQ-KLEKLM 569
Cdd:pfam12128 250 FNTLESAELRLSHLHFGYKSDETLIASRQEERqetsaelnQLLRTLDDQWKEKRDELNGELS-AADAAVAKDRsELEALE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 570 VQMKV-LSEDKEVLSAEVkslyEENNKLSSEKKQLSRDLEVFLSQKEDVILKEHITQLEKKLQLmVEEQDNLNKLLENEQ 648
Cdd:pfam12128 329 DQHGAfLDADIETAAADQ----EQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQN-NRDIAGIKDKLAKIR 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 649 VQKlfvktqlygflkEMGSEVSEdseekdvvNVLQAVgESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEEL 728
Cdd:pfam12128 404 EAR------------DRQLAVAE--------DDLQAL-ESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPEL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 729 KSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIH-NEKEKCFIKEHEN 807
Cdd:pfam12128 463 LLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQlFPQAGTLLHFLRK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 808 LKPLLEQKELRDRRAELILLKD---SLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINkiklvAVKAKKELDSSR 884
Cdd:pfam12128 543 EAPDWEQSIGKVISPELLHRTDldpEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRER-----LDKAEEALQSAR 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 885 KETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLL--LEYEKQSEQLDVEK---ERANNFEHRIEDLTRQLRNSTLQ 959
Cdd:pfam12128 618 EKQAAAEEQLVQANGELEKASREETFARTALKNARLDLrrLFDEKQSEKDKKNKalaERKDSANERLNSLEAQLKQLDKK 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 960 CETInSDNEDLLARIETLQSNAKLLEVqILEVQRAKAMVDKELEAEKLQKEQKIKEHATTV-NELEELQV---QLQKEKK 1035
Cdd:pfam12128 698 HQAW-LEEQKEQKREARTEKQAYWQVV-EGALDAQLALLKAAIAARRSGAKAELKALETWYkRDLASLGVdpdVIAKLKR 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1036 QLQKTMQELELVKKDAQqttlmnmEIADYERLMKE--------LNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQ 1107
Cdd:pfam12128 776 EIRTLERKIERIAVRRQ-------EVLRYFDWYQEtwlqrrprLATQLSNIERAISELQQQLARLIADTKLRRAKLEMER 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1108 SSVQQYEEKNTKIKQLLVKTKKELADSKQAETDhlilqASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQH 1187
Cdd:pfam12128 849 KASEKQQVRLSENLRGLRCEMSKLATLKEDANS-----EQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADH 923
|
...
gi 148921645 1188 QRT 1190
Cdd:pfam12128 924 SGS 926
|
|
| CC149 |
pfam09789 |
Coiled-coil domain-containing protein 149-A; Members of this family have been annotated as ... |
877-1113 |
1.26e-03 |
|
Coiled-coil domain-containing protein 149-A; Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Pssm-ID: 462902 [Multi-domain] Cd Length: 314 Bit Score: 42.70 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 877 KKELDSSRKETQTVKEELESLRSEKDQLSAsMRDLIQgaESYKNLLLEYEKQSEQLDVEKERANNfEHRIEDLTRQLRNS 956
Cdd:pfam09789 1 KRKLQSKVEALLILSKELEKCRQERDQYKL-MAEQLQ--ERYQGLKKQLRELKAGNNDFKPDDRE-QVNLIQLLRDSREQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 957 TLQCETinsDNEDLLARIETLQSNAKLLEVQIlEVQRAKAMVDKELEAEKLQKEQKIKehatTVNELEELQVQLQKEKKQ 1036
Cdd:pfam09789 77 NKCLRL---EVEELRQKLNEAQGDIKLLREQI-ARQRLGGPDEGSISTRHFPLHEREE----LVKQLEKLRKKCQQLERD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1037 LQKTMQELE--LVKKDAQQTtlmnmeiaDYERLMKELNQKLTNKNNKIEDLEQ---EIKIQKQKQETLQEEITSLQSSVQ 1111
Cdd:pfam09789 149 LQSVLDEKEelETERDAYKC--------KAHRLNHELNYILGGDESRIVDIDAlimENRYLQERLKQLEEEKELAKQTLS 220
|
..
gi 148921645 1112 QY 1113
Cdd:pfam09789 221 KY 222
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
738-1123 |
1.60e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 738 EKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKcfikehenlkplLEQKEL 817
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEK------------MEQERL 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 818 RDRRAElillkdslakspsvKNDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQtvKEELESL 897
Cdd:pfam17380 302 RQEKEE--------------KAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEER--KRELERI 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 898 RSEKDQLSAS-MRDLiqgaesyKNLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDnedllariet 976
Cdd:pfam17380 366 RQEEIAMEISrMREL-------ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE---------- 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 977 lQSNAKLLEVQILEVQRAKAMvdKELEAEKLQKEQKIKEhaTTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTL 1056
Cdd:pfam17380 429 -QEEARQREVRRLEEERAREM--ERVRLEEQERQQQVER--LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 148921645 1057 MNMEIADYERLMKELNQKLTNKNNKI-EDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQL 1123
Cdd:pfam17380 504 RKQAMIEEERKRKLLEKEMEERQKAIyEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAM 571
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
742-1309 |
1.70e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 742 LRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTcskSEIHNEKEKCFIKEHENLKPLLEQKELRDRR 821
Cdd:PRK01156 178 LRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERL---SIEYNNAMDDYNNLKSALNELSSLEDMKNRY 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 822 AELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRK--------------ET 887
Cdd:PRK01156 255 ESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDaeinkyhaiikklsVL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 888 QTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLdveKERANNFEHRIEDLTRQLRNSTLQCETINSDN 967
Cdd:PRK01156 335 QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKI---EEYSKNIERMSAFISEILKIQEIDPDAIKKEL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 968 EDLLARIETLQSNAKLLEVQIlevqraKAMVDKELE----AEKLQKEQKIKEHATTVNE--LEELQVQLQKEKKQLQKTM 1041
Cdd:PRK01156 412 NEINVKLQDISSKVSSLNQRI------RALRENLDElsrnMEMLNGQSVCPVCGTTLGEekSNHIINHYNEKKSRLEEKI 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1042 QELELVKKDAQQTTLMNMEIADYerLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITslqssvqQYEEKNTKIK 1121
Cdd:PRK01156 486 REIEIEVKDIDEKIVDLKKRKEY--LESEEINKSINEYNKIESARADLEDIKIKINELKDKHD-------KYEEIKNRYK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1122 QLlvktKKELADSKQAETDHLILQASLKgELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYQQRVTAL 1201
Cdd:PRK01156 557 SL----KLEDLDSKRTSWLNALAVISLI-DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1202 QEEcraakaeqatvTSEFESYKVRVHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTL 1281
Cdd:PRK01156 632 NNK-----------YNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARL 700
|
570 580
....*....|....*....|....*...
gi 148921645 1282 QSEHDTLLERHNKMLQETVSKEAELREK 1309
Cdd:PRK01156 701 ESTIEILRTRINELSDRINDINETLESM 728
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
329-852 |
1.82e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 329 KEQHQKEISElNETFLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEailnYESLREIMEILQTELGESAGKISQEFESMK 408
Cdd:PRK03918 188 TENIEELIKE-KEKELEEVLREINEISSELPELREELEKLEKEVKE----LEELKEEIEELEKELESLEGSKRKLEEKIR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 409 QQQaSDVHELQQKLRtaftEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKI 488
Cdd:PRK03918 263 ELE-ERIEELKKEIE----ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 489 NSLTEEKDDF------INKLKNSHEEMDNFHKKCEREERLILEL-GKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQN 561
Cdd:PRK03918 338 ERLEELKKKLkelekrLEELEERHELYEEAKAKKEELERLKKRLtGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 562 DQKLEKLMVQMKVLSEDKEVLSAEVKSLYEEN-----NKLSSEKKQLSRDLEVFLSQKEDviLKEHITQLEK-------- 628
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKELKEIEEKERK--LRKELRELEKvlkkesel 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 629 -KLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVS-EDSEEKDVVNVLQAVGESLAKINEEKCNLafqrDEK 706
Cdd:PRK03918 496 iKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgEIKSLKKELEKLEELKKKLAELEKKLDEL----EEE 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 707 VLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLR---KELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEE 783
Cdd:PRK03918 572 LAELLKELEELGFESVEELEERLKELEPFYNEYLELKdaeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 148921645 784 VSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSpsvkndpLSSVKELEEKI 852
Cdd:PRK03918 652 LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE-------LEEREKAKKEL 713
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
879-1136 |
2.14e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 879 ELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLRNSTL 958
Cdd:pfam10174 469 ELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEE 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 959 QCETinsdNEDLLARIETLQSNAKLLEVqilEVQRAKAMVD------KELEAEKLQKEQKIkehattvNELEELQVQLQK 1032
Cdd:pfam10174 549 AVRT----NPEINDRIRLLEQEVARYKE---ESGKAQAEVErllgilREVENEKNDKDKKI-------AELESLTLRQMK 614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1033 E--KKQLQKTMQELELVKKDAQQttlmnmeiaDYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSV 1110
Cdd:pfam10174 615 EqnKKVANIKHGQQEMKKKGAQL---------LEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSL 685
|
250 260
....*....|....*....|....*.
gi 148921645 1111 QQYEEKNTKIKQLLVKTKKELADSKQ 1136
Cdd:pfam10174 686 AEKDGHLTNLRAERRKQLEEILEMKQ 711
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
961-1101 |
2.33e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 961 ETINSDNEDLLARIETLQSNAKLLEVQILEVQRakamvdKELEAEKLQKEQKikehattvNELEELQVQLQKEKKQLQKT 1040
Cdd:PRK00409 509 KLIGEDKEKLNELIASLEELERELEQKAEEAEA------LLKEAEKLKEELE--------EKKEKLQEEEDKLLEEAEKE 574
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 148921645 1041 MQE-LELVKKDAQQT--TLMNMEIADYERL-MKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQE 1101
Cdd:PRK00409 575 AQQaIKEAKKEADEIikELRQLQKGGYASVkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| DUF4407 |
pfam14362 |
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins ... |
884-978 |
2.56e-03 |
|
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.
Pssm-ID: 464151 [Multi-domain] Cd Length: 295 Bit Score: 41.85 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 884 RKETQTVKEELESLRSEKDQLSASMRDLIQGA------------------ESYKNLLLEYEKQSEQLDVEKERAN----N 941
Cdd:pfam14362 132 RARLAELEAQIAALDAEIDAAEARLDALQAEArceldgtpgtgtgvpgdgPVAKTKQAQLDAAQAELAALQAQNDarlaA 211
|
90 100 110
....*....|....*....|....*....|....*..
gi 148921645 942 FEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQ 978
Cdd:pfam14362 212 LRAELARLTAERAAARARSQAAIDGDDGLLARLEALN 248
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1000-1377 |
2.72e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1000 KELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQqttlmnmeIADYERLMKELNQKLTNKN 1079
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ--------LLPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1080 NKIEDLEQEIkiqkQKQETLQEEITSLQSSVQQYEEK-NTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQ 1158
Cdd:COG4717 146 ERLEELEERL----EELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1159 VEVYKIQLAEITSEKHKIHEHLKTSAEQHQR-------TLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVHNVLK 1231
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLliaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1232 QQKNKSMSQAETEGAKQERehLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLERHNKMLQET------------ 1299
Cdd:COG4717 302 KEAEELQALPALEELEEEE--LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEEleqeiaallaea 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1300 -VSKEAELREKLcSIQSENMMMKSEHTQTVSQLTSQNEVLRNSFRD-----------QVRHLQEEHRKTVETLQQQLSKM 1367
Cdd:COG4717 380 gVEDEEELRAAL-EQAEEYQELKEELEELEEQLEELLGELEELLEAldeeeleeeleELEEELEELEEELEELREELAEL 458
|
410
....*....|
gi 148921645 1368 EAQLFQLKNE 1377
Cdd:COG4717 459 EAELEQLEED 468
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
28-270 |
2.88e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 28 KEIENLKNELMAVRSKYSEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKLQEEIEKIrpgfEEQILYLQKQLDAT 107
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL----EEELEELEEELEEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 108 TDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELmcQIEASAKEHEAEINKLNELKENLVKQCEASE 187
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL--EALRAAAELAAQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 188 KNIQKKYECELENLRKATSNANQDNQICSILLQENTFVEQVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMD 267
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
...
gi 148921645 268 AQH 270
Cdd:COG1196 501 ADY 503
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
415-1135 |
3.83e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 415 VHELQQKLRTAFTEK--DALLETVNRLQGENEKLLSQQELVPEL-ENTIKNLQEkngvyLLSLSQRDTMLKELEGKINSL 491
Cdd:COG5022 748 ATRIQRAIRGRYLRRryLQALKRIKKIQVIQHGFRLRRLVDYELkWRLFIKLQP-----LLSLLGSRKEYRSYLACIIKL 822
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 492 TeekddfiNKLKnsheemdnfhKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQndQKLEKLMVQ 571
Cdd:COG5022 823 Q-------KTIK----------REKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSA--QRVELAERQ 883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 572 MKVLSEDKEvlsaEVKSLYEENNKLSSEKKQLSRDLEVFLsQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQK 651
Cdd:COG5022 884 LQELKIDVK----SISSLKLVNLELESEIIELKKSLSSDL-IENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNK 958
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 652 LF--------VKTQLYGFLKEMGSEVSEDSEEKD-VVNVLQAVGE--SLAKINEEKCNLAFQRDEKVLELEKEIK--CLQ 718
Cdd:COG5022 959 LHevesklkeTSEEYEDLLKKSTILVREGNKANSeLKNFKKELAElsKQYGALQESTKQLKELPVEVAELQSASKiiSSE 1038
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 719 EESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNAnEKTRlenqNLLIQVEEVSQTCSKSEIHNEKE 798
Cdd:COG5022 1039 STELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQL-ESTE----NLLKTINVKDLEVTNRNLVKPAN 1113
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 799 KCFIKEHENLKPLLEQKELRDRRAELILLKDSLaKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKK 878
Cdd:COG5022 1114 VLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVF-QKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKS 1192
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 879 ELDSSrkETQTVKEELESLRS---EKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLRN 955
Cdd:COG5022 1193 KLSSS--EVNDLKNELIALFSkifSGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDN 1270
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 956 ST----LQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQ 1031
Cdd:COG5022 1271 LLssykLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFEISDVDEELEELIQAVKVLQ 1350
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1032 KEKKQLQKTMQELELVK--KDAQQTTLMNM-EIADYE-----RLMKELNQKLTNKNNKIEDLE-QEIKIQKQKQETLQEE 1102
Cdd:COG5022 1351 LLKDDLNKLDELLDACYslNPAEIQNLKSRyDPADKEnnlpkEILKKIEALLIKQELQLSLEGkDETEVHLSEIFSEEKS 1430
|
730 740 750
....*....|....*....|....*....|...
gi 148921645 1103 ITSLQSSVQQYEEKNTKIKQLLVKTKKELADSK 1135
Cdd:COG5022 1431 LISLDRNSIYKEEVLSSLSALLTKEKIALLDRK 1463
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
17-631 |
3.89e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 17 KELEQSHINYVKEIENLKNELMAVRSKYSEdkanLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEQ 96
Cdd:TIGR04523 134 KENKKNIDKFLTEIKKKEKELEKLNNKYND----LKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKK 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 97 IlYLQKQLDATTDEKKETVTQLQNIIEANSQHYQK---NINSLQEELLQLKAIHQEEVKELmcqieaSAKEHEAE-INKL 172
Cdd:TIGR04523 210 I-QKNKSLESQISELKKQNNQLKDNIEKKQQEINEkttEISNTQTQLNQLKDEQNKIKKQL------SEKQKELEqNNKK 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 173 NELKENLVKQCEASEKNIQKKYECELENLRKaTSNANQDNQICSILLQ--ENTFVEQVVNEKVKHLEDTLKELESQHSIL 250
Cdd:TIGR04523 283 IKELEKQLNQLKSEISDLNNQKEQDWNKELK-SELKNQEKKLEEIQNQisQNNKIISQLNEQISQLKKELTNSESENSEK 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 251 KDEVTYMNNLKLKLEMDAQHIKDEFFH---EREDLEFKINELLLAKEEQGCVIEKLKSELAGLNKQ---FCYTVEQHNRE 324
Cdd:TIGR04523 362 QRELEEKQNEIEKLKKENQSYKQEIKNlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEierLKETIIKNNSE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 325 VQSLKEQ-HQKEISELNETFLSDSEKEKL-TLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISq 402
Cdd:TIGR04523 442 IKDLTNQdSVKELIIKNLDNTRESLETQLkVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS- 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 403 EFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVpELENTIKNLQEKNgvyllslSQRDTMLK 482
Cdd:TIGR04523 521 SLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIE-ELKQTQKSLKKKQ-------EEKQELID 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 483 ELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQND 562
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESK 672
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 563 QKLEKLMVQMKV-LSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDVILKEHITQLEKKLQ 631
Cdd:TIGR04523 673 TKIDDIIELMKDwLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKFD 742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
300-588 |
4.04e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 300 IEKLKSELAGLNKQfcyTVEQHNREVQSLKEQHQKEISELNETfLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNY 379
Cdd:COG1196 222 LKELEAELLLLKLR---ELEAELEELEAELEELEAELEELEAE-LAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 380 ESLREIMEILQ---TELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPEL 456
Cdd:COG1196 298 ARLEQDIARLEerrRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 457 ENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQY 536
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 148921645 537 NSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKS 588
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3-214 |
4.04e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 3 QEVEDSVTKMGDAHKELEQSHINYVKEIENLKNELMAVRskysEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKL 82
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELE----ERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 83 QEEIEKIRPGFEEQILYLQKQLDATTDEKKETVTQLQNII--EANSQHYQKNINSLQEELLQLKAIHQEEVKELMCQIEA 160
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALraAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 148921645 161 SAKEHEAEINKLNELKENLVKQCEASEKNIQKKYECELENLRKATSNANQDNQI 214
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
974-1132 |
4.21e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 974 IETLQSNAKLLEVQILEVQRAKAMV---DKELEAEKLQKEQKI---KEHATTVNELEELQVQLQKEKKQLQKTMQELElv 1047
Cdd:PRK12704 29 AEAKIKEAEEEAKRILEEAKKEAEAikkEALLEAKEEIHKLRNefeKELRERRNELQKLEKRLLQKEENLDRKLELLE-- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1048 KKdaqqttlmnmeiadyERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSvqqyEEKNTKIKQLLVKT 1127
Cdd:PRK12704 107 KR---------------EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE----EAKEILLEKVEEEA 167
|
....*
gi 148921645 1128 KKELA 1132
Cdd:PRK12704 168 RHEAA 172
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1176-1377 |
4.66e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1176 IHEHLKTSAEQHQRTLSAYQQRVTALQEecRAAKAEQAtvtseFESYKVRvHNVLKQQKNKSMSQAETEGAKQEREHLEM 1255
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRK--ELEEAEAA-----LEEFRQK-NGLVDLSEEAKLLLQQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1256 LIDQLKIKLQDSQNNLQINVSELQTLQSehDTLLERHNKMLQETVSKEAELREKLcsiqsenmmmKSEHtQTVSQLTSQN 1335
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARY----------TPNH-PDVIALRAQI 300
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 148921645 1336 EVLRNSFRDQVRHLQEEHRKTVETLQQQLSKMEAQLFQLKNE 1377
Cdd:COG3206 301 AALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
881-1112 |
4.90e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 881 DSSRKETQTVKEELESLRSEKDQLSASMRDLIQgaesyKNLLLEYEKQSEQLDvekERANNFEHRIEDLTRQLRNSTLQC 960
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEFRQ-----KNGLVDLSEEAKLLL---QQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 961 ETINSDNEDLLARIETLQSNAkllEVQILEVQRAkamvdkELEAEKLQKEQKIKEHATTV----NELEELQVQLQKEKKQ 1036
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSP---VIQQLRAQLA------ELEAELAELSARYTPNHPDVialrAQIAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 148921645 1037 LQKTMQElELVKKDAQQTTLMNmEIADYERLMKELNQKLTnknnKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQ 1112
Cdd:COG3206 314 ILASLEA-ELEALQAREASLQA-QLAQLEARLAELPELEA----ELRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
974-1160 |
5.15e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 974 IETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQ 1053
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1054 ------------------------------TTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEI 1103
Cdd:COG3883 98 sggsvsyldvllgsesfsdfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 148921645 1104 TSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVE 1160
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAA 234
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1081-1291 |
5.20e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 5.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1081 KIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQllvktkkeLADSKQAETDHlilqASLKGELEASQQqve 1160
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR--------LAEYSWDEIDV----ASAEREIAELEA--- 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1161 vykiQLAEITSEKHKIhEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVhnvlkqqknksmSQ 1240
Cdd:COG4913 676 ----ELERLDASSDDL-AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL------------EA 738
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 148921645 1241 AETEGAKQEREHLEMLIDQLKIK--LQDSQNNLQINVSELQTLQSEHDTLLER 1291
Cdd:COG4913 739 AEDLARLELRALLEERFAAALGDavERELRENLEERIDALRARLNRAEEELER 791
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
996-1246 |
5.24e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 996 AMVDKELEAEKLQKEQKIKEHATTVNELEELQvqlqkekKQLQKTMQELElvkkdaqqttlmnmeiadyerlmkELNQKL 1075
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQ-------AELEELNEEYN------------------------ELQAEL 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1076 TNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLvkTKKELAD--------SKQAETDHLILQas 1147
Cdd:COG3883 61 EALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDVLL--GSESFSDfldrlsalSKIADADADLLE-- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1148 lkgELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVH 1227
Cdd:COG3883 137 ---ELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAA 213
|
250
....*....|....*....
gi 148921645 1228 NVLKQQKNKSMSQAETEGA 1246
Cdd:COG3883 214 AAAAAAAAAAAAAAAAAAA 232
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
473-993 |
5.30e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 473 SLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGK------KVEQTIQYNSELEQKVNE 546
Cdd:PRK01156 205 QIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTaesdlsMELEKNNYYKELEERHMK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 547 LTGGLEETLKEKDQNDQKLEKlmvQMKVLSEDKEVLSAEVKSlYEENNKLSSEKKQLSRDLEVFLSQKEDviLKEHITQL 626
Cdd:PRK01156 285 IINDPVYKNRNYINDYFKYKN---DIENKKQILSNIDAEINK-YHAIIKKLSVLQKDYNDYIKKKSRYDD--LNNQILEL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 627 ---EKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNV-LQAVGESLAKINEEKCNLAfq 702
Cdd:PRK01156 359 egyEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVkLQDISSKVSSLNQRIRALR-- 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 703 rdEKVLELEKEIKCLQEESVVQC-------EELKSLLRDYEQEKVLLRKELEEIQSEKEAL------QSDLLEMKNANEK 769
Cdd:PRK01156 437 --ENLDELSRNMEMLNGQSVCPVcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIdekivdLKKRKEYLESEEI 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 770 TRLENQNLLIQVEEVSQTCSKSEIHNEKEKCfiKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVK-EL 848
Cdd:PRK01156 515 NKSINEYNKIESARADLEDIKIKINELKDKH--DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSnEI 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 849 EEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDliqgaesyknllleYEKQ 928
Cdd:PRK01156 593 KKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDN--------------YKKQ 658
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 148921645 929 SEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQR 993
Cdd:PRK01156 659 IAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1021-1363 |
5.46e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1021 NELEELQVQLQKEKKQLQKT---MQELELVKKDAQQTTLMNMEIA---DYERLMKELNQKLTNKNNKIEDLEQEIKIQKQ 1094
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLsfdVQKLQRLHQAFSRFIGSHLAVAfeaDPEAELRQLNRRRVELERALADHESQEQQQRS 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1095 KQETLQEEITSLQSSVQQyeekntkIKQLLVKTKKELADSKQAEtdhliLQASLKGELEASQQQVEVYKI--QLAEITSE 1172
Cdd:PRK04863 866 QLEQAKEGLSALNRLLPR-------LNLLADETLADRVEEIREQ-----LDEAEEAKRFVQQHGNALAQLepIVSVLQSD 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1173 KHKiHEHLKTSAEQHQRTLSAYQQRVTALQE--ECRAAKA-EQAtvtsefesykvrvhnvlkqQKNKSMSQAETEGAKQE 1249
Cdd:PRK04863 934 PEQ-FEQLKQDYQQAQQTQRDAKQQAFALTEvvQRRAHFSyEDA-------------------AEMLAKNSDLNEKLRQR 993
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1250 REHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLERHNKMLQE----TVSKEAELREKLCSIQSENMMMKSEHT 1325
Cdd:PRK04863 994 LEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQElqdlGVPADSGAEERARARRDELHARLSANR 1073
|
330 340 350
....*....|....*....|....*....|....*...
gi 148921645 1326 QTVSQLTSQnevlRNSFRDQVRHLQEEHRKTVETLQQQ 1363
Cdd:PRK04863 1074 SRRNQLEKQ----LTFCEAEMDNLTKKLRKLERDYHEM 1107
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
969-1121 |
5.53e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.80 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 969 DLLARIETLQSNAKLLEVQIlEVQRAKAMVDKeLEAEKLQKEQKikehATTVNELEELQVQLQKEKKQLQKTMQeleLVK 1048
Cdd:COG1566 71 QVLARLDPTDLQAALAQAEA-QLAAAEAQLAR-LEAELGAEAEI----AAAEAQLAAAQAQLDLAQRELERYQA---LYK 141
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148921645 1049 KDA--QQttlmnmEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQEtLQEEITSLQSSVQQYEE--KNTKIK 1121
Cdd:COG1566 142 KGAvsQQ------ELDEARAALDAAQAQLEAAQAQLAQAQAGLREEEELAA-AQAQVAQAEAALAQAELnlARTTIR 211
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
216-568 |
5.70e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 5.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 216 SILLQENTFVEQVVNEKVKHLEDT---LKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEffheREDLEFKINELLLA 292
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE----IENVKSELKELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 293 KEEQGCVIEKLKSELAGLNKQFCYT-VEQHNREVQSLKEQHQKEISELNET--FLSDSEKEKLTLMFEIQGLKEQCENLQ 369
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHSrIPEIQAELSKLEEEVSRIEARLREIeqKLNRLTLEKEYLEKEIQELQEQRIDLK 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 370 QEKQEAILNYESLREIMEILQTELGESAGKISQ--------------------EFESMKQQQASDVH-------ELQQKL 422
Cdd:TIGR02169 847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDlesrlgdlkkerdeleaqlrELERKIEELEAQIEkkrkrlsELKAKL 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 423 RTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGVYLLSLSQRDTMLK---ELEGKINSLTEEKD--- 496
Cdd:TIGR02169 927 EALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKrldELKEKRAKLEEERKail 1006
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148921645 497 DFINKLKNSHEE--MDNFHKKCEREERLILELGKKVEQTIqynseLEQKVNELTGGLEETLKEKDQNDQKLEKL 568
Cdd:TIGR02169 1007 ERIEEYEKKKREvfMEAFEAINENFNEIFAELSGGTGELI-----LENPDDPFAGGLELSAKPKGKPVQRLEAM 1075
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
727-1183 |
5.70e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 5.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 727 ELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQtcsKSEIHNEKEKCFIKEHE 806
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK---ELEQNNKKIKELEKQLN 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 807 NLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKE 886
Cdd:TIGR04523 292 QLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 887 TQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERannFEHRIEDLTRQLRNSTLQCETINSD 966
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL---LEKEIERLKETIIKNNSEIKDLTNQ 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 967 NEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNE---LEELQVQLQKEKKQLQKTMQE 1043
Cdd:TIGR04523 449 DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEkkeLEEKVKDLTKKISSLKEKIEK 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1044 LELVK--KDAQQTTLMNMEIADYERLMKELNQK-LTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKI 1120
Cdd:TIGR04523 529 LESEKkeKESKISDLEDELNKDDFELKKENLEKeIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEK 608
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 148921645 1121 KQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTS 1183
Cdd:TIGR04523 609 EKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKES 671
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
877-1109 |
6.69e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 6.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 877 KKELDSSRKETQTVKEELESLRSEKD-------------QLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERA---- 939
Cdd:PRK11281 86 KQQLAQAPAKLRQAQAELEALKDDNDeetretlstlslrQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAqaal 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 940 NNFEHRIEDLTRQLRNSTLQCETINSDNEDLlarietLQSNAKLLEVQIlEVQRakamvdKELEA-EKLQK-EQKIKEHA 1017
Cdd:PRK11281 166 YANSQRLQQIRNLLKGGKVGGKALRPSQRVL------LQAEQALLNAQN-DLQR------KSLEGnTQLQDlLQKQRDYL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1018 TTVNELEELQVQL------QKEKKQLQKTMQELELVKKDAQQTTlmNMEIADYERLMKELNQKL---TNKNNKIEDLEQE 1088
Cdd:PRK11281 233 TARIQRLEHQLQLlqeainSKRLTLSEKTVQEAQSQDEAARIQA--NPLVAQELEINLQLSQRLlkaTEKLNTLTQQNLR 310
|
250 260
....*....|....*....|....*
gi 148921645 1089 IKIQ----KQKQETLQEEITSLQSS 1109
Cdd:PRK11281 311 VKNWldrlTQSERNIKEQISVLKGS 335
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
871-1045 |
6.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 871 LVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEkerannfehRIEDLT 950
Cdd:COG4913 274 LEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---------RLEQLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 951 RQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRakamvdkELEAEKLQKEQKIKEHATTVNELEELQVQL 1030
Cdd:COG4913 345 REIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA-------EAAALLEALEEELEALEEALAEAEAALRDL 417
|
170
....*....|....*
gi 148921645 1031 QKEKKQLQKTMQELE 1045
Cdd:COG4913 418 RRELRELEAEIASLE 432
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
987-1103 |
7.07e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 987 QILEVQRAKAMVDKELEAEKL---------QKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTtlm 1057
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREkeheereltEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSE--- 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 148921645 1058 nmeiadyERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEI 1103
Cdd:COG2433 457 -------ERREIRKDREISRLDREIERLERELEEERERIEELKRKL 495
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1099-1316 |
7.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1099 LQEEITSLQSSVQQYEEkntkIKQLLVKTKKELADSKQAETDHLILQASL--KGELEASQQQVEVYKIQLAEITSEKHKi 1176
Cdd:COG4913 223 TFEAADALVEHFDDLER----AHEALEDAREQIELLEPIRELAERYAAARerLAELEYLRAALRLWFAQRRLELLEAEL- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1177 hEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEfesykvRVHNVLKQQKNKsmsQAETEGAKQEREHLEML 1256
Cdd:COG4913 298 -EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD------RLEQLEREIERL---ERELEERERRRARLEAL 367
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 1257 IDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSE 1316
Cdd:COG4913 368 LAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
109-356 |
8.20e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 8.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 109 DEKKETVTQLQN-----IIEANSQ-------HYQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHEAEINKLNELK 176
Cdd:PRK05771 16 SYKDEVLEALHElgvvhIEDLKEElsnerlrKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 177 ENLVKQCEASEKNI------QKKYECELENLRKaTSNANQDNqicsILLQENTFVEQVVNEKVKHLEDTLKELESQH--- 247
Cdd:PRK05771 96 EKIEKEIKELEEEIseleneIKELEQEIERLEP-WGNFDLDL----SLLLGFKYVSVFVGTVPEDKLEELKLESDVEnve 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 248 --SILKDEVTYM-NNLKLKlemdaqhiKDEFFHEREDLEFKINELL---LAKEeqgcVIEKLKSELAGLNKQfcytVEQH 321
Cdd:PRK05771 171 yiSTDKGYVYVVvVVLKEL--------SDEVEEELKKLGFERLELEeegTPSE----LIREIKEELEEIEKE----RESL 234
|
250 260 270
....*....|....*....|....*....|....*
gi 148921645 322 NREVQSLKEQHQKEISELNETFLSDSEKEKLTLMF 356
Cdd:PRK05771 235 LEELKELAKKYLEELLALYEYLEIELERAEALSKF 269
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
742-1044 |
9.81e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 9.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 742 LRKELEEIQSEKEALQSDLLEMKNAnEKTRLENQNLLIQVEEVSQtcskSEIhnekekcfikeheNLKPLleQKELRDRR 821
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAE-LDALQERREALQRLAEYSW----DEI-------------DVASA--EREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 822 AELillkDSLAKSPSVkndplssVKELEEKIENLEKECKekeekinkiklvavKAKKELDSSRKETQTVKEELESLRSEK 901
Cdd:COG4913 675 AEL----ERLDASSDD-------LAALEEQLEELEAELE--------------ELEEELDELKGEIGRLEKELEQAEEEL 729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148921645 902 DQLSASMRDLIQGAESYKNLLLEYEKQSEQLD-VEKERANNFEHRIEDLTRQLRNSTLQCETI--------NSDNEDLLA 972
Cdd:COG4913 730 DELQDRLEAAEDLARLELRALLEERFAAALGDaVERELRENLEERIDALRARLNRAEEELERAmrafnrewPAETADLDA 809
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 148921645 973 RIETLQSNAKLLEvqilevqrakamvdkELEAEKL-QKEQKIKE--HATTVNELEELQVQLQKEKKQLQKTMQEL 1044
Cdd:COG4913 810 DLESLPEYLALLD---------------RLEEDGLpEYEERFKEllNENSIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| |
