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Conserved domains on  [gi|1488968965|gb|RKT47737|]
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NADH dehydrogenase subunit J [Thiocapsa rosea]

Protein Classification

NADH-quinone oxidoreductase subunit J( domain architecture ID 11482363)

NADH-quinone oxidoreductase subunit J (NuoJ) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Gene Ontology:  GO:0008137|GO:0048038|GO:0016020
PubMed:  36104567|23417064|24059520

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06638 PRK06638
NADH-quinone oxidoreductase subunit J;
1-199 2.49e-64

NADH-quinone oxidoreductase subunit J;


:

Pssm-ID: 235844 [Multi-domain]  Cd Length: 198  Bit Score: 197.75  E-value: 2.49e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965   1 MGFEKFLFYVFAAITLVAAGMVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMLDVD 80
Cdd:PRK06638    1 MTGEAIAFYILALLAVLAALGVVTSRNPVHSALFLILTFLSIAGLYFLLGAEFLGVVQIIVYVGAVMVLFLFVVMMLDVD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  81 IAtLRAGFIRYLPFGALIAVVLALEIFLIVGPANFGLQQFPSPVPAGPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIV 160
Cdd:PRK06638   81 FS-EREQLREWLPGGVLIGLVILLGLLLLLIVGAIIAASGVNAQGIAAGEGNTKAIGILLFTDYLLPFELASVLLLVAMV 159

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1488968965 161 AAIRLTLRRRPETKYMDPAKQVRVKKgPDRIRIVKMPSE 199
Cdd:PRK06638  160 GAIVLARRERARVKRQDVPAQLPDGR-EDALSVVKVEEG 197
 
Name Accession Description Interval E-value
PRK06638 PRK06638
NADH-quinone oxidoreductase subunit J;
1-199 2.49e-64

NADH-quinone oxidoreductase subunit J;


Pssm-ID: 235844 [Multi-domain]  Cd Length: 198  Bit Score: 197.75  E-value: 2.49e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965   1 MGFEKFLFYVFAAITLVAAGMVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMLDVD 80
Cdd:PRK06638    1 MTGEAIAFYILALLAVLAALGVVTSRNPVHSALFLILTFLSIAGLYFLLGAEFLGVVQIIVYVGAVMVLFLFVVMMLDVD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  81 IAtLRAGFIRYLPFGALIAVVLALEIFLIVGPANFGLQQFPSPVPAGPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIV 160
Cdd:PRK06638   81 FS-EREQLREWLPGGVLIGLVILLGLLLLLIVGAIIAASGVNAQGIAAGEGNTKAIGILLFTDYLLPFELASVLLLVAMV 159

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1488968965 161 AAIRLTLRRRPETKYMDPAKQVRVKKgPDRIRIVKMPSE 199
Cdd:PRK06638  160 GAIVLARRERARVKRQDVPAQLPDGR-EDALSVVKVEEG 197
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 4-169 2.88e-58

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 181.08  E-value: 2.88e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965   4 EKFLFYVFAAITLVAAGMVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMLDVDIAT 83
Cdd:COG0839     1 ETILFYIFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLLDLDKEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  84 LRAGFIRYLPFGALIAVVLALEIFLIVGPANFGlqqfPSPVPAGPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIVAAI 163
Cdd:COG0839    81 LREGFRKYRPLAALVGLLLLAELAYVLLSTSWA----AAPAAAAAAVGNTKALGELLFTDYLLPFELASVLLLVAMIGAI 156


                  ....*.
gi 1488968965 164 RLTLRR 169
Cdd:COG0839   157 VLARRE 162
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
21-165 3.33e-37

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 126.46  E-value: 3.33e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  21 MVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMldVDIATLRAGFIRYLPFGALIAV 100
Cdd:pfam00499   2 GVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIML--LLAEEEPEKLRSGLPLAALLLG 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488968965 101 VLaleIFLIVGPANFGLQQFPSPVPAGPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIVAAIRL 165
Cdd:pfam00499  80 LL---LLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTDYLLPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
PRK06638 PRK06638
NADH-quinone oxidoreductase subunit J;
1-199 2.49e-64

NADH-quinone oxidoreductase subunit J;


Pssm-ID: 235844 [Multi-domain]  Cd Length: 198  Bit Score: 197.75  E-value: 2.49e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965   1 MGFEKFLFYVFAAITLVAAGMVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMLDVD 80
Cdd:PRK06638    1 MTGEAIAFYILALLAVLAALGVVTSRNPVHSALFLILTFLSIAGLYFLLGAEFLGVVQIIVYVGAVMVLFLFVVMMLDVD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  81 IAtLRAGFIRYLPFGALIAVVLALEIFLIVGPANFGLQQFPSPVPAGPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIV 160
Cdd:PRK06638   81 FS-EREQLREWLPGGVLIGLVILLGLLLLLIVGAIIAASGVNAQGIAAGEGNTKAIGILLFTDYLLPFELASVLLLVAMV 159

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1488968965 161 AAIRLTLRRRPETKYMDPAKQVRVKKgPDRIRIVKMPSE 199
Cdd:PRK06638  160 GAIVLARRERARVKRQDVPAQLPDGR-EDALSVVKVEEG 197
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 4-169 2.88e-58

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 181.08  E-value: 2.88e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965   4 EKFLFYVFAAITLVAAGMVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMLDVDIAT 83
Cdd:COG0839     1 ETILFYIFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLLDLDKEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  84 LRAGFIRYLPFGALIAVVLALEIFLIVGPANFGlqqfPSPVPAGPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIVAAI 163
Cdd:COG0839    81 LREGFRKYRPLAALVGLLLLAELAYVLLSTSWA----AAPAAAAAAVGNTKALGELLFTDYLLPFELASVLLLVAMIGAI 156


                  ....*.
gi 1488968965 164 RLTLRR 169
Cdd:COG0839   157 VLARRE 162
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
21-165 3.33e-37

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 126.46  E-value: 3.33e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  21 MVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMldVDIATLRAGFIRYLPFGALIAV 100
Cdd:pfam00499   2 GVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIML--LLAEEEPEKLRSGLPLAALLLG 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488968965 101 VLaleIFLIVGPANFGLQQFPSPVPAGPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIVAAIRL 165
Cdd:pfam00499  80 LL---LLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTDYLLPFELASVLLLVALVGAIVL 141
ND6 MTH00057
NADH dehydrogenase subunit 6; Provisional
 5-177 6.62e-36

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177129 [Multi-domain]  Cd Length: 186  Bit Score: 124.73  E-value: 6.62e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965   5 KFLFYVFAAITLVAAGMVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMLDVDIATL 84
Cdd:MTH00057    2 EGLFYLFALGVIISGIMVISALNPVHSVLWLIVAFTSASALFILLEVEFIALIFLIVYVGAIAILFLFVIMMLNLTDLEG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  85 RAGFIRYLPFGALIAVVLALEIFLIVGPANFGLQQFPSPVPA-GPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIVAAI 163
Cdd:MTH00057   82 GGDMSNYLPAGFIIGVVFLFEVSSGISLLSSGTKIGQWDFPNwIEKESNIEVLGRVLYTDYYYLFILASFILLVAMIGAI 161

                         170
                  ....*....|....
gi 1488968965 164 RLTLRRRPETKYMD 177
Cdd:MTH00057  162 VLTHDLIIEIKRQD 175
ND6 MTH00021
NADH dehydrogenase subunit 6; Validated
 11-167 6.50e-23

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 214401 [Multi-domain]  Cd Length: 188  Bit Score: 91.33  E-value: 6.50e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  11 FAAITLVAAG-MVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMLDV-DIATLRAG- 87
Cdd:MTH00021    1 FFSLGIIGSGiMVISALNPVHSIFWLVVVFVNSAVFFILLGLDFLALMFLIIYVGAIAILFLFVIMLLNLtDFPPAFGGe 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  88 --FIRYLPFGALIAVVLALEI----FLIVGPANFGLQQFPSPVPAgpEVSNTEELGLLLYTVYVYPFEIAAVILLVAIVA 161
Cdd:MTH00021   81 adMTNYIPIGLIIGTLFFSEIasswLIIGGPYVERWDLAFPWFLI--SYHNIEALGRILYITCYYLFLLASFILLVAMIG 158


                  ....*.
gi 1488968965 162 AIRLTL 167
Cdd:MTH00021  159 AIVLTQ 164
PRK06433 PRK06433
NADH dehydrogenase subunit J; Provisional
 1-76 3.37e-14

NADH dehydrogenase subunit J; Provisional


Pssm-ID: 180562 [Multi-domain]  Cd Length: 88  Bit Score: 65.40  E-value: 3.37e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1488968965   1 MGFEKFLFYVFAAITLVAAGMVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMM 76
Cdd:PRK06433    1 MMYETIAFALFALVTVAFSLGVVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVLVYVGAVLILITFAVML 76
ND6 MTH00213
NADH dehydrogenase subunit 6; Provisional
 27-167 3.64e-13

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177256 [Multi-domain]  Cd Length: 239  Bit Score: 66.08  E-value: 3.64e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  27 NPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMLDVDIATLRAGFIRYLP------------- 93
Cdd:MTH00213   22 NFLASVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGAKGFKPTKGNKKEkerkkgeetgrig 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  94 ----FGALIAVVLALEI-------FLIVGPANFGLQQFPSPV-------------------------------------- 124
Cdd:MTH00213  102 appaIGILIGAILAAELasavpdsFLNNPSGRGGAERYELTNilsdrnrgvssllgsdkesittgiqnniymrvgatgap 181

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1488968965 125 ---------PAGPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIVAAIRLTL 167
Cdd:MTH00213  182 ylyndsfftLNGSGGTNLEAIGSVLYINYYYAFILVSFILLVAMIGAIVLGL 233
ndhG CHL00016
NADH dehydrogenase subunit 6
 5-173 1.15e-12

NADH dehydrogenase subunit 6


Pssm-ID: 214335 [Multi-domain]  Cd Length: 182  Bit Score: 63.77  E-value: 1.15e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965   5 KFLFYVFAAITLVAAGMVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMMLD------ 78
Cdd:CHL00016    9 DFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILLNADFVAAAQLLIYVGAINVLIIFAVMFMNgpeysk 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965  79 ----VDIATLRAGFIRYLPFGALIAVVLA---LEIFLIVGPANFGLQQFpspvpagpeVSNTEELGLLLYTVYVYPFEIA 151
Cdd:CHL00016   89 dfnlWTVGDGITSLVCTSLFFSLITTILDtswYGIIWTTRSNQIIEQDL---------ISNVQQIGIHLSTDFLLPFELI 159

                         170       180
                  ....*....|....*....|..
gi 1488968965 152 AVILLVAIVAAIrlTLRRRPET 173
Cdd:CHL00016  160 SIILLVALIGAI--TVARQEQV 179
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 8-166 1.38e-04

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 41.04  E-value: 1.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488968965   8 FYVFAAITLVAAGMVITRRNPVHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVvmmldvdiATLRAG 87
Cdd:MTH00045    3 FYLFLILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYS--------SALSAE 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1488968965  88 fiRYLPFGALIAVVLALEIFLIVGPANFGLQQFPSPVPAGPEVSNTEELGLLLYTVYVYPFEIAAVILLVAIVAAIRLT 166
Cdd:MTH00045   75 --RYPSVSNLGEVLVLSLLLSLWVFISFDNFLELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVIS 151
ND6 MTH00064
NADH dehydrogenase subunit 6; Provisional
 29-77 8.70e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177136  Cd Length: 151  Bit Score: 35.61  E-value: 8.70e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1488968965  29 VHAVLYLVLAFISSAALWILLEAEFLGIVLILVYVGAVMVLFLFVVMML 77
Cdd:MTH00064   25 YYCVLLVVNSLISSLICYLVYGFSWYSLLFCLVYVGGVYILFIFVSVFS 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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