NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|148872367|gb|ABR14857|]
View 

putative yopB/yopD chaperone (plasmid) [Yersinia pestis CA88-4125]

Protein Classification

SycD/LcrH family type III secretion system chaperone( domain architecture ID 11494488)

SycD/LcrH family type III secretion system chaperone similar to Yersinia pestis low calcium response locus protein H that mediates the negative regulation of the lcrGVH operon by ATP or calcium

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 21-154 4.74e-53

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


:

Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 164.77  E-value: 4.74e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367   21 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100
Cdd:TIGR02552   2 GGATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 148872367  101 IKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAI 154
Cdd:TIGR02552  82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLESL 135
 
Name Accession Description Interval E-value
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 21-154 4.74e-53

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 164.77  E-value: 4.74e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367   21 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100
Cdd:TIGR02552   2 GGATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 148872367  101 IKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAI 154
Cdd:TIGR02552  82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLESL 135
PRK15363 PRK15363
CesD/SycD/LcrH family type III secretion system chaperone SscA;
1-154 1.32e-13

CesD/SycD/LcrH family type III secretion system chaperone SscA;


Pssm-ID: 185261 [Multi-domain]  Cd Length: 157  Bit Score: 64.62  E-value: 1.32e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367   1 MQQETTDTQEYqlAMESFLKGGGTIAML-NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGAC 79
Cdd:PRK15363   1 MKKDPTLQQAH--DTMRFFRRGGSLRMLlDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGEC 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 148872367  80 RQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAI 154
Cdd:PRK15363  79 CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
30-136 6.03e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.61  E-value: 6.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFH 109
Cdd:COG0457   70 ELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN 149

                         90       100
                 ....*....|....*....|....*..
gi 148872367 110 AAECLLQKGELAEAESGLFLAQELIAD 136
Cdd:COG0457  150 LGIALEKLGRYEEALELLEKLEAAALA 176
TPR_3 pfam07720
Tetratricopeptide repeat; This Pfam entry includes tetratricopeptide-like repeats found in the ...
 36-69 5.37e-05

Tetratricopeptide repeat; This Pfam entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones.


Pssm-ID: 400185  Cd Length: 34  Bit Score: 38.63  E-value: 5.37e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 148872367   36 LEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD 69
Cdd:pfam07720   1 LDYLYSLAAVFYLKGKYQEARHLYSLLAILDKEN 34
 
Name Accession Description Interval E-value
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 21-154 4.74e-53

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 164.77  E-value: 4.74e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367   21 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100
Cdd:TIGR02552   2 GGATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 148872367  101 IKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAI 154
Cdd:TIGR02552  82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLESL 135
PRK15363 PRK15363
CesD/SycD/LcrH family type III secretion system chaperone SscA;
1-154 1.32e-13

CesD/SycD/LcrH family type III secretion system chaperone SscA;


Pssm-ID: 185261 [Multi-domain]  Cd Length: 157  Bit Score: 64.62  E-value: 1.32e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367   1 MQQETTDTQEYqlAMESFLKGGGTIAML-NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGAC 79
Cdd:PRK15363   1 MKKDPTLQQAH--DTMRFFRRGGSLRMLlDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGEC 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 148872367  80 RQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAI 154
Cdd:PRK15363  79 CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153
PRK15331 PRK15331
type III secretion system translocator chaperone SicA;
19-162 2.82e-11

type III secretion system translocator chaperone SicA;


Pssm-ID: 185231  Cd Length: 165  Bit Score: 58.53  E-value: 2.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  19 LKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAI 98
Cdd:PRK15331  20 VSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148872367  99 MDIKEPRFPFHAAECLLQKGELAEAESGLflaqELIADKTEFKELSTRVSSMLEAIKLKKEMEH 162
Cdd:PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCF----ELVNERTEDESLRAKALVYLEALKTAETEQH 159
PRK15359 PRK15359
type III secretion system chaperone protein SscB; Provisional
 37-154 2.38e-06

type III secretion system chaperone protein SscB; Provisional


Pssm-ID: 185257 [Multi-domain]  Cd Length: 144  Bit Score: 44.99  E-value: 2.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQ 116
Cdd:PRK15359  25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 148872367 117 KGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAI 154
Cdd:PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTL 142
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
30-136 6.03e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.61  E-value: 6.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFH 109
Cdd:COG0457   70 ELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN 149

                         90       100
                 ....*....|....*....|....*..
gi 148872367 110 AAECLLQKGELAEAESGLFLAQELIAD 136
Cdd:COG0457  150 LGIALEKLGRYEEALELLEKLEAAALA 176
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-159 6.88e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 6.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAE 112
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 148872367 113 CLLQKGELAEAESglfLAQELIADKTEFKELSTRVSSMLEAIKLKKE 159
Cdd:COG4783   81 ALLKAGDYDEALA---LLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 7-124 1.09e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 1.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367   7 DTQEYQLAMESFLKgggtiamLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQY 86
Cdd:COG3914   90 ALGRYEEALALYRR-------ALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 148872367  87 DLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAE 124
Cdd:COG3914  163 EEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
30-124 1.43e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.84  E-value: 1.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFH 109
Cdd:COG0457   36 ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYN 115

                         90
                 ....*....|....*
gi 148872367 110 AAECLLQKGELAEAE 124
Cdd:COG0457  116 LGLALLELGRYDEAI 130
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 9-133 3.47e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 3.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367   9 QEYQLAMESFLKGGGTIAM-----LNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAM 83
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEallekALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 148872367  84 GQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
Cdd:COG4783   86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
TPR_3 pfam07720
Tetratricopeptide repeat; This Pfam entry includes tetratricopeptide-like repeats found in the ...
 36-69 5.37e-05

Tetratricopeptide repeat; This Pfam entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones.


Pssm-ID: 400185  Cd Length: 34  Bit Score: 38.63  E-value: 5.37e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 148872367   36 LEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD 69
Cdd:pfam07720   1 LDYLYSLAAVFYLKGKYQEARHLYSLLAILDKEN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
46-136 4.61e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 4.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  46 QYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIhSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAES 125
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|.
gi 148872367 126 GLFLAQELIAD 136
Cdd:COG3063   81 YLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 47-127 6.90e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 6.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  47 YQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESG 126
Cdd:COG5010   65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144


                 .
gi 148872367 127 L 127
Cdd:COG5010  145 L 145
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
30-124 8.78e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.45  E-value: 8.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFH 109
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                         90
                 ....*....|....*
gi 148872367 110 AAECLLQKGELAEAE 124
Cdd:COG0457   82 LGLALQALGRYEEAL 96
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-123 1.04e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.17  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367   9 QEYQLAMESFLKgggtiamLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88
Cdd:COG2956   22 GQPDKAIDLLEE-------ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 148872367  89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123
Cdd:COG2956   95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA 129
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 7-90 4.03e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 35.75  E-value: 4.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367   7 DTQEYQLAMESFLKgggtiamLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQY 86
Cdd:COG4235   29 RLGRYDEALAAYEK-------ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101


                 ....
gi 148872367  87 DLAI 90
Cdd:COG4235  102 AEAI 105
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 40-139 4.65e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 36.25  E-value: 4.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  40 YSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGE 119
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                         90       100
                 ....*....|....*....|
gi 148872367 120 LAEAESGLFLAQELIADKTE 139
Cdd:COG2956   92 LDRAEELLEKLLELDPDDAE 111
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 34-123 6.40e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 34.98  E-value: 6.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872367  34 DTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAEC 113
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                         90
                 ....*....|
gi 148872367 114 LLQKGELAEA 123
Cdd:COG4235   95 AFQQGDYAEA 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH