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Conserved domains on  [gi|148872361|gb|ABR14851|]
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putative type III secretion protein (plasmid) [Yersinia pestis CA88-4125]

Protein Classification

type_III_YscX family protein( domain architecture ID 10020796)

type_III_YscX family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_III_YscX TIGR02502
type III secretion protein, YscX family; Members of this family are encoded within bacterial ...
 1-122 3.03e-63

type III secretion protein, YscX family; Members of this family are encoded within bacterial type III secretion gene clusters. Among all species with type III secretion, those with this protein are found among those that target animal rather than plant cells. The member of this family in Yersinia was shown by mutation to be required for type III secretion of Yops effector proteins and therefore is believe to be part of the secretion machinery. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


:

Pssm-ID: 131554  Cd Length: 121  Bit Score: 188.46  E-value: 3.03e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872361    1 MSRIItAPHIGIEKLSAISLEELSCGLPERYALPPDGHPVEPHLERLYPTAQSKRSLWDFASPGYTFHGLHRAQDYRREL 80
Cdd:TIGR02502   1 MSRVS-ALHIGIEALTAISHEEVDTDLPERYALLPDGQPVETHLERLYPARQSDQYLLAFAKPQLNFHGLLRPEDYRQAL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 148872361   81 DTLQSLLTTSQSSELQAAAALLKCQQDDDRLLQIILNLLHKV 122
Cdd:TIGR02502  80 DNLQQLLQESGSANLQAAAELLQSTQLDERLLQMALNLLHKV 121
 
Name Accession Description Interval E-value
type_III_YscX TIGR02502
type III secretion protein, YscX family; Members of this family are encoded within bacterial ...
 1-122 3.03e-63

type III secretion protein, YscX family; Members of this family are encoded within bacterial type III secretion gene clusters. Among all species with type III secretion, those with this protein are found among those that target animal rather than plant cells. The member of this family in Yersinia was shown by mutation to be required for type III secretion of Yops effector proteins and therefore is believe to be part of the secretion machinery. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 131554  Cd Length: 121  Bit Score: 188.46  E-value: 3.03e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872361    1 MSRIItAPHIGIEKLSAISLEELSCGLPERYALPPDGHPVEPHLERLYPTAQSKRSLWDFASPGYTFHGLHRAQDYRREL 80
Cdd:TIGR02502   1 MSRVS-ALHIGIEALTAISHEEVDTDLPERYALLPDGQPVETHLERLYPARQSDQYLLAFAKPQLNFHGLLRPEDYRQAL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 148872361   81 DTLQSLLTTSQSSELQAAAALLKCQQDDDRLLQIILNLLHKV 122
Cdd:TIGR02502  80 DNLQQLLQESGSANLQAAAELLQSTQLDERLLQMALNLLHKV 121
Type_III_YscX pfam09474
Type III secretion system YscX (type_III_YscX); Members of this family are encoded within ...
 7-121 2.52e-32

Type III secretion system YscX (type_III_YscX); Members of this family are encoded within bacterial type III secretion gene clusters. Among all species with type III secretion, those with this protein are found among those that target animal rather than plant cells. The member of this family in Yersinia was shown by mutation to be required for type III secretion of Yops effector proteins and therefore is believed to be part of the secretion machinery.


Pssm-ID: 462812  Cd Length: 119  Bit Score: 110.08  E-value: 2.52e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872361    7 APHIGIEKLSAISlEELSCGLPERYALPPDGHPVEPHLERLYPTAQSKRSLWDFASPGYTFHGLHRAQDYRRELDTLQSL 86
Cdd:pfam09474   2 DLDRGIESISDAS-AEVESPLPERRQLAPDGQAVEAHLEALYPAPNLDQLLEEALRPKLGDRELLRPANFRRALEEALQQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 148872361   87 LTTSQSSE----LQAAAALLKCQQDDDRLLQIILNLLHK 121
Cdd:pfam09474  81 LSELADQAvekaLQRALALLEELQELRRLLNMYRNLLVQ 119
 
Name Accession Description Interval E-value
type_III_YscX TIGR02502
type III secretion protein, YscX family; Members of this family are encoded within bacterial ...
 1-122 3.03e-63

type III secretion protein, YscX family; Members of this family are encoded within bacterial type III secretion gene clusters. Among all species with type III secretion, those with this protein are found among those that target animal rather than plant cells. The member of this family in Yersinia was shown by mutation to be required for type III secretion of Yops effector proteins and therefore is believe to be part of the secretion machinery. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 131554  Cd Length: 121  Bit Score: 188.46  E-value: 3.03e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872361    1 MSRIItAPHIGIEKLSAISLEELSCGLPERYALPPDGHPVEPHLERLYPTAQSKRSLWDFASPGYTFHGLHRAQDYRREL 80
Cdd:TIGR02502   1 MSRVS-ALHIGIEALTAISHEEVDTDLPERYALLPDGQPVETHLERLYPARQSDQYLLAFAKPQLNFHGLLRPEDYRQAL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 148872361   81 DTLQSLLTTSQSSELQAAAALLKCQQDDDRLLQIILNLLHKV 122
Cdd:TIGR02502  80 DNLQQLLQESGSANLQAAAELLQSTQLDERLLQMALNLLHKV 121
Type_III_YscX pfam09474
Type III secretion system YscX (type_III_YscX); Members of this family are encoded within ...
 7-121 2.52e-32

Type III secretion system YscX (type_III_YscX); Members of this family are encoded within bacterial type III secretion gene clusters. Among all species with type III secretion, those with this protein are found among those that target animal rather than plant cells. The member of this family in Yersinia was shown by mutation to be required for type III secretion of Yops effector proteins and therefore is believed to be part of the secretion machinery.


Pssm-ID: 462812  Cd Length: 119  Bit Score: 110.08  E-value: 2.52e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148872361    7 APHIGIEKLSAISlEELSCGLPERYALPPDGHPVEPHLERLYPTAQSKRSLWDFASPGYTFHGLHRAQDYRRELDTLQSL 86
Cdd:pfam09474   2 DLDRGIESISDAS-AEVESPLPERRQLAPDGQAVEAHLEALYPAPNLDQLLEEALRPKLGDRELLRPANFRRALEEALQQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 148872361   87 LTTSQSSE----LQAAAALLKCQQDDDRLLQIILNLLHK 121
Cdd:pfam09474  81 LSELADQAvekaLQRALALLEELQELRRLLNMYRNLLVQ 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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