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Conserved domains on  [gi|1483575046|gb|AYD74755|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Eurillas virens]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.91e-159

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 448.89  E-value: 3.91e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   1 MNPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTCMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1483575046 321 TSTTIAVLTVMSTALLPISPMIYSIT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.91e-159

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 448.89  E-value: 3.91e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   1 MNPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTCMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1483575046 321 TSTTIAVLTVMSTALLPISPMIYSIT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-275 4.25e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.28  E-value: 4.25e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQATASALVLF-SSMTNAwYTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  92 PTS------------CLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMK----FPPITLLLMTSHSLNP---T 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 153 LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM-VAILAYDPK-LTLLAFY--IYVPMTAAIFLTLDTI-NAPKL 227
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLsRKGGE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1483575046 228 STLMASW----TKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:COG1007   351 AEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGL 402
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.75e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.55  E-value: 1.75e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  23 SNHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  91 HPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLL-STMMKFPPITLLLMTS--HSLNPT---LLTCMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 165 GGWMGLNQTQIRKILAFSSISHLGWMVAILA----YDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLST-----LMASWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1483575046 236 KMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 2.72e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.24  E-value: 2.72e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  93 TSCLILT------------SAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMK---FPPITLLLMT-----SHSLNPT 152
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 153 LLTCmAILSAALGGWMGLNQTQIRKILAFSSISHLGW-MVAILAYDPKLTLLAFY---IYVPMTAAIFLTLDTINAPK-- 226
Cdd:TIGR01770 272 LAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLSLLRSYKde 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1483575046 227 ----LSTLMASWTKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:TIGR01770 351 wieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.91e-159

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 448.89  E-value: 3.91e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   1 MNPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTCMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1483575046 321 TSTTIAVLTVMSTALLPISPMIYSIT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 7.70e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 377.34  E-value: 7.70e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   1 MNPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWY 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTCMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*
gi 1483575046 321 TSTTIAVLTVMSTALLPISPMIYSI 345
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 5.77e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 374.91  E-value: 5.77e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   1 MNPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWY 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSlNPTLLTCMAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1483575046 321 TSTT-IAVLTVMSTALLPISPMIYSIT 346
Cdd:MTH00135  320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-342 1.93e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 330.65  E-value: 1.93e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   1 MNPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTCMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYCATITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....
gi 1483575046 319 KPTSTTIAVLTVMSTALLPISPMI 342
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPML 343
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 2.38e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 292.26  E-value: 2.38e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   1 MNPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWY 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTCMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1483575046 321 TSTTIAVLTVMSTALLPISPMIYSIT 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-267 1.70e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 241.37  E-value: 1.70e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   1 MNPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWY 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTCMAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260
                  ....*....|....*....|....*..
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 1.44e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 181.95  E-value: 1.44e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   1 MNPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWy 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  81 tgqwdITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLlmtSHSLNPTLLTCMAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQwhTNKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310

                         330       340
                  ....*....|....*....|....*
gi 1483575046 321 TSTTIAVLTVMSTALLPISPMIYSI 345
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 2.22e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.44  E-value: 2.22e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   5 AKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  85 DITqlthptscLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTC-MAILSAA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCvISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 164 LGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINApKLSTLMASWTKMPSLNTM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDS-GSMKDLGSLKPSYKTGLS 235

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1483575046 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 9.74e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 150.70  E-value: 9.74e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   7 LIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSmtnawyTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  87 TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTCMAILSAALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 167 WMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSLNTMLLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 247 TLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYcATITLPPHTTNhmkqwHTNKPTSTTIA 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                         330
                  ....*....|....
gi 1483575046 327 VLTVMSTALLPISP 340
Cdd:MTH00011  317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-275 2.59e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 139.04  E-value: 2.59e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   8 IFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAwytgqwdIT 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  88 QLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHslNPTLLTCMAILSAALGGW 167
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 168 MGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLSTLMASWTKMPSLNTMLLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260
                  ....*....|....*....|....*...
gi 1483575046 248 LLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNI 260
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-275 4.25e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.28  E-value: 4.25e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQATASALVLF-SSMTNAwYTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  92 PTS------------CLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMK----FPPITLLLMTSHSLNP---T 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 153 LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM-VAILAYDPK-LTLLAFY--IYVPMTAAIFLTLDTI-NAPKL 227
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLsRKGGE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1483575046 228 STLMASW----TKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:COG1007   351 AEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGL 402
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 1.35e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 105.50  E-value: 1.35e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  13 LLLGTTITISSNHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLTQATASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  79 WYTGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLmtSHSLNPTLLTCMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 159 ILSAALGGWMGLNQTQIRKILAFSSISHLG---WMVAILAYDP-KLTLLAFYIYVPMTAAIFLTLDTINAPK--LSTLMA 232
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFESiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1483575046 233 SWTKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.75e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.55  E-value: 1.75e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  23 SNHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  91 HPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLL-STMMKFPPITLLLMTS--HSLNPT---LLTCMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 165 GGWMGLNQTQIRKILAFSSISHLGWMVAILA----YDPKLTLLAFYIYVPMTAAIFLTLDTINAPKLST-----LMASWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1483575046 236 KMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 3.30e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 99.71  E-value: 3.30e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  13 LLLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDI----T 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  88 QLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNpTLLTCmAILSAALGGW 167
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN-VVLIC-AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 168 MGLNQTQIRKILAFSSISHLG---WMVAILAYDP-KLTLLAFYIYVPMTAAIFLTLDTINAPK--LSTLMASWTKMPSLN 241
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIA 343

                         250       260
                  ....*....|....*....|....*.
gi 1483575046 242 TMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-281 2.70e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 94.50  E-value: 2.70e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  93 TS------------CLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMK---FPPIT-LLLMTSHSLNPT---L 153
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 154 LTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM-VAILAYDPK-LTLLAFY--IYVPMTAAIF-----LTLDTINA 224
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAEgYSAVLFYllAYLFMTLGAFgvislLRRKGGEA 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1483575046 225 PKLSTLMASWTKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATV 281
Cdd:PRK05777  353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 2.72e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.24  E-value: 2.72e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  14 LLGTTITISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  93 TSCLILT------------SAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMK---FPPITLLLMT-----SHSLNPT 152
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 153 LLTCmAILSAALGGWMGLNQTQIRKILAFSSISHLGW-MVAILAYDPKLTLLAFY---IYVPMTAAIFLTLDTINAPK-- 226
Cdd:TIGR01770 272 LAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLSLLRSYKde 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1483575046 227 ----LSTLMASWTKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:TIGR01770 351 wieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-281 1.12e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.35  E-value: 1.12e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  13 LLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQLTH- 91
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  92 ---------PTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNP--------TLL 154
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadpalflgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 155 TCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVP----MTAAIFLTLDTI----NAPK 226
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAAGAIeratGTRD 355

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1483575046 227 LSTLMASWTKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATV 281
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAV 410
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-191 5.41e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.83  E-value: 5.41e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  15 LGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAI---------EAATKYFLTQATASALVLFSSMTNAWYTGQ-- 83
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  84 --WDITQLTHPTS----------CLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFppITLLLMTSHSLNP 151
Cdd:MTH00198  279 mlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1483575046 152 TLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMV 191
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-209 4.38e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.03  E-value: 4.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   7 LIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHP-RAIEAATKYFLTQATASALVL--FSsmtnaWYTGQ 83
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  84 -------WDI------TQLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTS 146
Cdd:CHL00049  189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIF 268

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1483575046 147 HSLNPT-------LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGW-MVAILAYDPK------LTLLAFYIYV 209
Cdd:CHL00049  269 DIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNdgyasmITYMLFYIFM 345
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-195 3.82e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.95  E-value: 3.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  49 HPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQW--DITQLTH-----PTSCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 119 MQGSPLTTGLLLS-TMMKFP-------PITLLLMTSHSLNPTLLTcMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008   236 HVEAPTAGSVLLAgVLLKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ....*
gi 1483575046 191 VAILA 195
Cdd:COG1008   315 LLGIF 319
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-195 5.61e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.53  E-value: 5.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  50 PRAIEAATKYFLTQATASALVLF-SSMTNAWYTGQwdiTQL--------THPTSCLILT-----SAIAMKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 116 PEVMQGSPLTTGLLLSTMMK---FPPITLLLMTSHSLNPT----LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                  ....*...
gi 1483575046 189 W-MVAILA 195
Cdd:PRK02504  314 FvMIGLVA 321
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.25e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.42  E-value: 1.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  33 LEINTLAVLPLIS-KSHHPRAIEAATKYFLTQATASALVLFS---------SMTNAWYTGQWDITQLTHPTSCL-ILTSA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 102 IAMKLGLVPFHFWFPEVMQGSP--LTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTC------MAILSAALGGWMGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 174 QIRKILAFSSISHLGWM-----VAILAY-DPKL-----TLLAFYIY-----VPMTAAIFLT-------LDTINAPKLSTL 230
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgVGLAALgDPAMasygeIALAGGIYhivnhALYKALLFLTagaviyeTGTRNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1483575046 231 MaswTKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  390 A---RTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-279 6.66e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.31  E-value: 6.66e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   2 NPQAKLIFASSLLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHpRAIEAATKYFLTQATASALVLFSSMTNAWYT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  82 GQWDIT-------QLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLS-------------TMMKFP 137
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygfllVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 138 PITLLL----MTSHSLNPTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLA--FYI--YV 209
Cdd:PRK08668  255 GTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGglFHVfnHA 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1483575046 210 PMTAAIFLTLDTI----NAPKLSTLMASWTKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTA 279
Cdd:PRK08668  335 LFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-191 2.14e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 55.33  E-value: 2.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  50 PRAIEAATKYFLTQATASALVLFSSMTNAWYTGQW----DITQLTHPTSC-----LILTSAIAMKLGLVPFHFWFPEVMQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 121 -----GSPLTTGLLLST----MMKFpPITLLLMTSHSLNPtLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMV 191
Cdd:TIGR01972 232 eaptaGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK12650 PRK12650
DUF4040 family protein;
87-263 1.13e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 53.51  E-value: 1.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  87 TQLTHPTSCLILTSAIAmKLGLVPFHFWFPEVMQG-SPLTTGLLLSTMMKfPPITLLLMTS--HSLNPT---LLTCMAIL 160
Cdd:PRK12650  204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVK-AGIYLLLRFSpvFHDVAVwnwLLIIVGMI 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVPMTA----AIFLTLDTIN----APKLSTLMA 232
Cdd:PRK12650  282 TALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHAlfksSLFMLIGVVDhqagTRDIRRLGS 361

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1483575046 233 SWTKMPSLNTMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  362 LWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-281 1.16e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 52.96  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  33 LEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFS-SMTNAwYTGQWDITQL--------THPTSCLILTSAIA 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 104 MKLGLVPFHFWFPEVMQG-SPLTTGLLLSTMMKFPPITLLLMTSHSLNP---------TLLTCMAILSAALGGWMGLNQT 173
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 174 QIRKILAFSSISHLGWMVAILAYDPKLTLLA--FYI--YVPMTAAIFLTL----DTINAPKLSTLMASWTKMPSLNTMLL 245
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAgaieVTYGTRRLSELSGLGRRMPLTAAAFA 373

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1483575046 246 LTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATV 281
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAV 409
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-270 2.47e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 52.08  E-value: 2.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  48 HHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQL-----THPTSCLILTSAIAM------KLGLVPFHFWFP 116
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 117 EVMQGsPLTTGLLL--STMMK---FppitlLLMTSH---SLNPTLLTCMAILSAA---LGGWMGLNQTQIRKILAFSSIS 185
Cdd:COG1009   236 DAMEG-PTPVSALLhaATMVKagvY-----LLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVS 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 186 HLGWMVAIL---AYDPKLTLL---AFYiyvpmTAAIFL-------TLDTINAPKLSTLmasWTKMPSLNTMLLLTLLSLA 252
Cdd:COG1009   310 QLGYMFLALgvgAYVAALFHLlthAFF-----KALLFLgagsvihATGTRDIRKMGGL---RKKMPITAITFLIGALSLA 381

                         250
                  ....*....|....*...
gi 1483575046 253 GLPPLTGFLPKWLIIQEL 270
Cdd:COG1009   382 GIPPFAGFFSKEAILEAA 399
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 7.81e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 50.69  E-value: 7.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 109 VPFHFWFPEVMQG-SPLTTGLLLSTMMKfPPITLLLMTSHSLNPT-----LLTCMAILSAALGGWMGLNQTQIRKILAFS 182
Cdd:PRK12647  212 FPFHFWLPNAMEApTPVSAYLHSATMVK-AGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 183 SISHLGWMVAILAYDPKLTLLAFYIYVPM----TAAIFLTLDTIN----APKLSTLMASWTKMPSLNTMLLLTLLSLAGL 254
Cdd:PRK12647  291 TVSALGTLVMLLGLGSELAIKAAVLFLVAhslyKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSMAGL 370

                         170
                  ....*....|..
gi 1483575046 255 PPLTGFLPKWLI 266
Cdd:PRK12647  371 PPLFGFLAKELI 382
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-336 1.02e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 50.35  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  48 HHPRAIEAATKYFLTQATASALVLFS--SMTNAWYT-----------GQWdITQLTHPTSCLILTSAIAM---------K 105
Cdd:PRK12667  158 DRGDAVEAAIKYALIGAVGTTLYFLAlaFLYATFGTlnmadlsakirGLS-FPLTGGLAGNPPLALGVALalalwaftiK 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 106 LGLVPFHFWFPEVMQGSPLTTGLLLS---------TMMKFppITLLLMTSHSLNPTLLTCMAIL------SAALGGWMGL 170
Cdd:PRK12667  237 AAIFPNHFWLPDAHPAAPSPVSAMLSglvvnvgayAIIRF--LYTIFGISPSLIDFRAALSPILiilgavSAIIGALMMV 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 171 NQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVP----------MTAAIFLtlDTINAPKLSTLMASWTKMPSL 240
Cdd:PRK12667  315 VQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFI--HAAGTRDIDELAGLGRKMPIA 392

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTATVLSLLSLLGLFFYLRLAYCATITLPPHTTNHMKqwhtnKP 320
Cdd:PRK12667  393 SFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEH-----KE 467

                         330
                  ....*....|....*.
gi 1483575046 321 TSTTIAVLTVMSTALL 336
Cdd:PRK12667  468 SPSMSVVILVLALAVL 483
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 1.05e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 50.31  E-value: 1.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  96 LILTSAIAmKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLM------TSHSLNPTLLTcMAILSAALGGWMG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARlapgfaDVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 170 LNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAfyiYVPMT-------AAIFLTLDTINAP-------KLSTLmasWT 235
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALA---GLAMLlahalfkAALFLVVGIIDHStgtrdirKLSGL---GR 359

                         170       180
                  ....*....|....*....|....*...
gi 1483575046 236 KMPSLNTMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  360 RQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-191 1.38e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 49.82  E-value: 1.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  50 PRAIEAATKYFLTQATASALVLFSSMTNAWY----TGQWDITQLTH---PTSCLILT-----SAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 118 VMQ-----GSPLTTGLLLST----MMKFPpITLLLMTSHSLNPTLLTcMAILSAALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgaygLLRFS-LPLFPDASHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                  ...
gi 1483575046 189 WMV 191
Cdd:PRK05846  315 FVT 317
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-191 1.61e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.75  E-value: 1.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  13 LLLGTTITISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATA------SALVLFSSMTNAWYTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  87 TQLTHPT----------SCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPT---- 152
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1483575046 153 ----LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMV 191
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLML 313
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-191 2.75e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 2.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   8 IFASSLLLgttiTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTnAWYTGQwdiT 87
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIL-VYANAA---T 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  88 QLTHPTSCLILTSAIAM----------------------KLGLVPFHFWFPEVMQGSP-----LTTGLLLST----MMKF 136
Cdd:PRK06458  188 VMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRY 267

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1483575046 137 PPITLLLMTSHSLNPtLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMV 191
Cdd:PRK06458  268 YILIDAAIGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIA 321
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-192 3.10e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 48.79  E-value: 3.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  33 LEINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQLTH--PTSCLILTSAIAMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 111 FHFWFPEVMQGSPLTTGLLLSTMMK----FPPITLLLMTSHSLNPtlLTCMAILSAALGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280


                  ....*.
gi 1483575046 187 LGWMVA 192
Cdd:PRK07234  281 LGFILA 286
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 6.16e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 43.02  E-value: 6.16e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1483575046 295 RLAYCATITLPPHTTNHMKQWHTNKPTSTT-IAVLTVMSTALLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-204 1.15e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.00  E-value: 1.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  55 AATKYFLTQATASALVLFSSMTNAWYTG-------QWDITQLTHPTSCLILTS---AIAMKLGLVPFHFWFPE--VMQGS 122
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDahVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 123 P---LTTGLLLST----MMKFPpITLLLMTSHSLNPTLLTcMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMVAILA 195
Cdd:PRK06473  238 PvsvLLAGVLLKLgtygLLRFG-VGLFPEAWVYLAPWLAT-WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAA 315


                  ....*....
gi 1483575046 196 YDPKLTLLA 204
Cdd:PRK06473  316 AATPLSILA 324
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 34-197 1.25e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 46.95  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  34 EINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQ--WDITQLTH---PTSCLILTSA---IA-- 103
Cdd:PRK12561  117 ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYAgflIAfg 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 104 MKLGLVPFHFWFPEV-----MQGSPLTTGLLLStMMKFPPITL---LLMTSHSLNPTLLTCMAILSAALGGWMGLNQTQI 175
Cdd:PRK12561  197 VKLPIFPLHTWLPDAhgeasAPVSMILAGVLLK-MGGYALIRFnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNV 275

                         170       180
                  ....*....|....*....|...
gi 1483575046 176 RKILAFSSISHLGW-MVAILAYD 197
Cdd:PRK12561  276 KRRLAYSSVSHMGFvLLGIAAFT 298
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-275 5.39e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 44.64  E-value: 5.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  34 EINTLAVLPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQ-----LTHPTSCLILTSAIAMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 109 V------PFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMT-----SHSLNP---TLLTCMAILSAALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPsaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 175 IRKILAFSSISHLGWMVAILAYDPKLTLLAFYIY----VPMTAAIFLTLDTI----NAPKLSTLMASWTKMPSLNTMLLL 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHainhVIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260
                  ....*....|....*....|....*....
gi 1483575046 247 TLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQAAMQANM 398
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 8.22e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.43  E-value: 8.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  48 HHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDITQLTHPTS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 113 FWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPT-----LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 188 GWMVAILAY----DPKLTLLA--FYI--YVPMTAAIFLtLDTINAPKLST-----LMASWTKMPSLNTMLLLTLLSLAGL 254
Cdd:PRK12649  315 AYLMTMYGYttyhEPGLGVAAatFHLlnHATFKACLFL-VAGIVAHEAATrdirkLGGLRKEMPITFIVASIAALAMAGI 393


                  ....*....
gi 1483575046 255 PPLTGFLPK 263
Cdd:PRK12649  394 PPLNGFLSK 402
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 1.06e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.95  E-value: 1.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  55 AATKYFLTQATASALVLFSSMTNAWYTGQWDITQLTHPT-----SCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLL 129
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1483575046 130 LSTMM-KFPPITLLLMTSHSLNPTLLTCMAIL-----SAALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIG 307
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-274 1.58e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 105 KLGLvpfHFWFPEVMQGSPLTTGLLLSTMMKFPPITLL-----LMTSHSLNPTLLTCMAILSAALGGWMGLNQTQIRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 180 AFSSISHLGWMVAILAYDPKLTLLAFYI--YVPMTAAIFL---------TLDTINAPKLSTLMASwtkMPSLNTMLLLTL 248
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGS 394

                         170       180
                  ....*....|....*....|....*.
gi 1483575046 249 LSLAGLPPLTGFLPKWLIIqELTKQG 274
Cdd:MTH00032  395 FSIMGLPYLTGFYSKDLIL-ELTYSG 419
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 1.58e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 43.16  E-value: 1.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  55 AATKYFLTQATASALVLFSSMTNAWYTGQWD------ITQ-LTHPTSCLILTSAI---AMKLGLVPFHFWFPEV-MQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 124 LTTGLLLSTMMKFPPITLLLM-------TSHSLNPTLLTCMAIlSAALGGWMGLNQTQIRKILAFSSISHLGWMVAILAY 196
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316


                  ....*..
gi 1483575046 197 DPKLTLL 203
Cdd:PRK07363  317 GTQLSLL 323
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 3.13e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 3.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  96 LILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITL------------LLMTSHSLNpTLLTCMAILSAA 163
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 164 LGGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLAFYIYVP----MTAAIFLTLDTI----NAPKLSTLMASWT 235
Cdd:PRK12662  292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSIsyhfGTTKLEDCLNLWK 371

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1483575046 236 KMPSLNTMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-279 5.51e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 41.73  E-value: 5.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046   2 NPQAKLIFASSLLLGTTITISSNhWITAWAGLEINTLAVLPLISkshHPR--AIEAATKYFLTQATASALVLF------- 72
Cdd:PRK06589  115 SSRFLFFFNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIG---HTRnnISLSGGYKYLKILMISALLLFlpavili 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  73 -SSMTNAWYTGQWDITQLTHPTSCLILTSAIAmKLGLVPFHFWFPEVMQGSPLTTGLLLSTMM----KFPPITLLLMTSH 147
Cdd:PRK06589  191 yTKTGNLDFVSGGLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFG 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 148 SLNPTLLTCM-------AILSAALGGWMGLNQTQIRKILAFSSISHLGWMV--AILAYDPKLTLLAFYIYVPMTAAI--F 216
Cdd:PRK06589  270 LSYLQRIFAEfnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALGAAILHLVSHSFAKIclF 349

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1483575046 217 LTLDTINAPK----LSTLMASWTKMPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMAPTA 279
Cdd:PRK06589  350 YSMGSIYSLKkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLS 416
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 68-203 7.35e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 41.48  E-value: 7.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  68 ALVLFSSMTNAWYTGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLL----- 142
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLirlsp 259

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1483575046 143 LMTSHSLNPTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM-VAILAYDPKLTLL 203
Cdd:MTH00211  260 LFQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMmVTLGLNQPQLAFL 321
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
13-191 1.36e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.45  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  13 LLLGTTITISSNHW---ITAWA--GLEINTLavlpLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWYTGQWDIT 87
Cdd:PRK08168  109 VLAAVHLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  88 QL-----THPTS------CLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLS--------TMMKFPPitlLLMTSHS 148
Cdd:PRK08168  185 ALwahlaAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAP---LLEQAPP 261

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1483575046 149 LNpTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMV 191
Cdd:PRK08168  262 AR-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFML 303
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 1.75e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.93  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  92 PTSCLILTSAIAMKLGLVPFhFWFPEVMQGSPLTTGLLLSTMMK-------FPPITLLLMTSHSLNPTLLTCMAILSAAL 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 165 GGWMGLNQTQIRKILAFSSISHLGWMVAILAYDPKLTLLA--FYIYVPMT--AAIFLTLDTINA----PKLSTLMASWTK 236
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRltgyRSLQYLGGLYRK 365

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1483575046 237 MPSLNTMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-188 4.15e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 4.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 101 AIAMKLGLVPFHFWFPEV-----MQGSPLTTGLLLS------TMMKFPpitLLLMTSHSLNPTLLTcMAILSAALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314

                          90
                  ....*....|....*....
gi 1483575046 170 LNQTQIRKILAFSSISHLG 188
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMG 333
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 75-193 8.12e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 37.97  E-value: 8.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  75 MTNAW---YTGQWDITQL-------THPTSCLILtsAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLL- 143
Cdd:MTH00066  182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLIL--AAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIr 259

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1483575046 144 ---MTSHslNPTLLT---CMAILSAALGGWMGLNQTQIRKILAFSSISHLG-WMVAI 193
Cdd:MTH00066  260 fhpLLEN--NQTALTiclCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGlMMVTI 314
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-268 8.49e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.13  E-value: 8.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046  95 CLILTSAIAMKLGLVPFHFWFPEVMQGSPLTTGLLLSTMMKFPPITLLLMTS--HSLNPTLLTCMAI---LSAALGGWMG 169
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSplFEQAPLALIIVTIvgsLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483575046 170 LNQTQIRKILAFSSISHLGWMVAILA---YDPKLTLL---AFY---IYVPMTAAIFLTLDTINAPKLSTLMASwtkMPSL 240
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACGlshYSISLFHLmnhAFFkalLFLSAGSVIHALSDEQDMRKMGGLISF---LPLT 369

                         170       180
                  ....*....|....*....|....*...
gi 1483575046 241 NTMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020  370 YIFFLIGSLSLMGFPYLTGFYSKDLILE 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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