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Conserved domains on  [gi|1482411111|gb|AYC39331|]
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Menaquinone reductase [Streptomyces griseorubiginosus]

Protein Classification

geranylgeranyl reductase family protein( domain architecture ID 11493467)

geranylgeranyl reductase family protein may be involved in chlorophyll and bacteriochlorophyll biosynthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 11-334 7.34e-105

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


:

Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 312.33  E-value: 7.34e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGLTPRAVKQLVAMGIDVSEEagwlRNKGLRIIGGGVRLQ 90
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRALEELDLPGELIVNL----VRGARFFSPNGDSVE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  91 LDWPdlasfPDYGLVRKRDDFDEQLARQAQKAGARL-YERCNVGAPITDERTGRITgvhaklgeDKREVTFHAPLVVAAD 169
Cdd:TIGR02032  78 IPIE-----TELAYVIDRDAFDEQLAERAQEAGAELrLGTRVLDVEIHDDRVVVIV--------RGSEGTVTAKIVIGAD 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 170 GNSTRLSLAMGlHRREDRPMGVAVRTYFESPrhEDDYLESWLELWDRRGPgedrLLPGYGWIFGMGDGTSNVGLGVLNTs 249
Cdd:TIGR02032 145 GSRSIVAKKLG-LKKEPREYGVAARAEVEMP--DEEVDEDFVEVYIDRGI----VPGGYGWVFPKGDGTANVGVGSRSA- 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 250 dsFKELDWREVLKAWCASMPEdwgyTPENMTGPIRGAALPMAFNRQPHYTRGLLLVGDAGGLVNPFNGEGIAYAMESGQI 329
Cdd:TIGR02032 217 --EEGEDPKKYLKDFLARRPE----LKDAETVEVCGALIPIGRPDEKLVRGNVLLVGDAAGHVNPLTGEGIYYAMRSGDI 290


                  ....*
gi 1482411111 330 AADVI 334
Cdd:TIGR02032 291 AAEVV 295
 
Name Accession Description Interval E-value
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 11-334 7.34e-105

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 312.33  E-value: 7.34e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGLTPRAVKQLVAMGIDVSEEagwlRNKGLRIIGGGVRLQ 90
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRALEELDLPGELIVNL----VRGARFFSPNGDSVE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  91 LDWPdlasfPDYGLVRKRDDFDEQLARQAQKAGARL-YERCNVGAPITDERTGRITgvhaklgeDKREVTFHAPLVVAAD 169
Cdd:TIGR02032  78 IPIE-----TELAYVIDRDAFDEQLAERAQEAGAELrLGTRVLDVEIHDDRVVVIV--------RGSEGTVTAKIVIGAD 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 170 GNSTRLSLAMGlHRREDRPMGVAVRTYFESPrhEDDYLESWLELWDRRGPgedrLLPGYGWIFGMGDGTSNVGLGVLNTs 249
Cdd:TIGR02032 145 GSRSIVAKKLG-LKKEPREYGVAARAEVEMP--DEEVDEDFVEVYIDRGI----VPGGYGWVFPKGDGTANVGVGSRSA- 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 250 dsFKELDWREVLKAWCASMPEdwgyTPENMTGPIRGAALPMAFNRQPHYTRGLLLVGDAGGLVNPFNGEGIAYAMESGQI 329
Cdd:TIGR02032 217 --EEGEDPKKYLKDFLARRPE----LKDAETVEVCGALIPIGRPDEKLVRGNVLLVGDAAGHVNPLTGEGIYYAMRSGDI 290


                  ....*
gi 1482411111 330 AADVI 334
Cdd:TIGR02032 291 AAEVV 295
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
17-359 1.88e-69

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 221.38  E-value: 1.88e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  17 AGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGLTPRAVKQLVAMGIDvSEEAGWLRNKGLRIIGGgvrlqlDWPDL 96
Cdd:COG0644     1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGLLPRALEELEPLGLD-EPLERPVRGARFYSPGG------KSVEL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  97 ASFPDYGLVRKRDDFDEQLARQAQKAGARLYERCNVGAPITDErtGRITgVHAklgedKREVTFHAPLVVAADGNSTRLS 176
Cdd:COG0644    74 PPGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDD--GRVV-VRT-----GDGEEIRADYVVDADGARSLLA 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 177 LAMGLHRREDRP--MGVAVRTYFESPRHEDDYLESWLELWDRRGPGedrllpGYGWIFGMGDGTSNVGlgvlntsdsfke 254
Cdd:COG0644   146 RKLGLKRRSDEPqdYALAIKEHWELPPLEGVDPGAVEFFFGEGAPG------GYGWVFPLGDGRVSVG------------ 207

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 255 ldwrevlkawcasmpedwgytpenmtgpirgaaLPMAFNRQPHYTRGLLLVGDAGGLVNPFNGEGIAYAMESGQIAADVI 334
Cdd:COG0644   208 ---------------------------------IPLGGPRPRLVGDGVLLVGDAAGFVDPLTGEGIHLAMKSGRLAAEAI 254

                         330       340
                  ....*....|....*....|....*
gi 1482411111 335 VQAHARSTPAGRemALQRYPRVLKD 359
Cdd:COG0644   255 AEALEGGDFSAE--ALAEYERRLRE 277
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 10-324 7.96e-16

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 78.14  E-value: 7.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  10 ADVIVVGAGPAGSTTAYHLAKAGLDVLLLEK----TEFPRekvcGDGLTPRAVKQLVAMGIDVSEEAGWLRNKGLRIIGG 85
Cdd:pfam01494   2 TDVLIVGGGPAGLMLALLLARAGVRVVLVERhattSVLPR----AHGLNQRTMELLRQAGLEDRILAEGVPHEGMGLAFY 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  86 GVRLQLDWPDLASFPDYGLVrKRDDFDEQLARQAQKAGARLYERCNVGAPITDErtgriTGVHAKL--GEDKREVTFHAP 163
Cdd:pfam01494  78 NTRRRADLDFLTSPPRVTVY-PQTELEPILVEHAEARGAQVRFGTEVLSLEQDG-----DGVTAVVrdRRDGEEYTVRAK 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 164 LVVAADG-NST-RLSLAMGLHRREDRPMGVaVRTYFESPR----HEDDYLESWLELWDRRG----PGEDRLLPGYGWIFG 233
Cdd:pfam01494 152 YLVGCDGgRSPvRKTLGIEFEGFEGVPFGS-LDVLFDAPDlsdpVERAFVHYLIYAPHSRGfmvgPWRSAGRERYYVQVP 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 234 MGDgtsnvglGVLNTSDsfkELDWREVLKAWCASMPEDWGYTPenmtgPIRGAALPMAFNRQPHYTRG-LLLVGDAGGLV 312
Cdd:pfam01494 231 WDE-------EVEERPE---EFTDEELKQRLRSIVGIDLALVE-----ILWKSIWGVASRVATRYRKGrVFLAGDAAHIH 295

                         330
                  ....*....|..
gi 1482411111 313 NPFNGEGIAYAM 324
Cdd:pfam01494 296 PPTGGQGLNTAI 307
PLN00093 PLN00093
geranylgeranyl diphosphate reductase; Provisional
 2-383 9.99e-15

geranylgeranyl diphosphate reductase; Provisional


Pssm-ID: 177713 [Multi-domain]  Cd Length: 450  Bit Score: 75.56  E-value: 9.99e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   2 TEPLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKtEFPREKVCGdGLTPravkqLVAMG-IDVSEEAGWLRNKGL 80
Cdd:PLN00093   32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIER-KLDNAKPCG-GAIP-----LCMVGeFDLPLDIIDRKVTKM 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  81 RIIGGGvRLQLDWPDLASFPDY-GLVRkRDDFDEQLARQAQKAGARLYERCNVGAPITDERTGRITgVHAKLGEDKREV- 158
Cdd:PLN00093  105 KMISPS-NVAVDIGKTLKPHEYiGMVR-REVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYV-IHYTSYDSGSGAg 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 159 ---TFHAPLVVAADGNSTRLSLAMGLHrreDRPMGVAVRTYFESPRHEDDYLESWLELWdrrgPGEDRLLPGYGWIFGMG 235
Cdd:PLN00093  182 tpkTLEVDAVIGADGANSRVAKDIDAG---DYDYAIAFQERIKIPDDKMEYYEDLAEMY----VGDDVSPDFYGWVFPKC 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 236 DGTSnVGLG-VLNTSDsfkeldwrevLKAWCASMPEDWGytpENMTGP--IRGAALPMAFNRQPHYTRG-LLLVGDAGGL 311
Cdd:PLN00093  255 DHVA-VGTGtVVNKPA----------IKKYQRATRNRAK---DKIAGGkiIRVEAHPIPEHPRPRRVRGrVALVGDAAGY 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 312 VNPFNGEGIAYAMESGQIAADVIVQAHARSTPAGREMALQRYPRVLKDTYGGYYTL-------------GR-AFVKLIGN 377
Cdd:PLN00093  321 VTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVldilqkvfyrsnpAReAFVEMCAD 400


                  ....*.
gi 1482411111 378 PKVMKI 383
Cdd:PLN00093  401 EYVQKM 406
 
Name Accession Description Interval E-value
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 11-334 7.34e-105

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 312.33  E-value: 7.34e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGLTPRAVKQLVAMGIDVSEEagwlRNKGLRIIGGGVRLQ 90
Cdd:TIGR02032   2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRALEELDLPGELIVNL----VRGARFFSPNGDSVE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  91 LDWPdlasfPDYGLVRKRDDFDEQLARQAQKAGARL-YERCNVGAPITDERTGRITgvhaklgeDKREVTFHAPLVVAAD 169
Cdd:TIGR02032  78 IPIE-----TELAYVIDRDAFDEQLAERAQEAGAELrLGTRVLDVEIHDDRVVVIV--------RGSEGTVTAKIVIGAD 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 170 GNSTRLSLAMGlHRREDRPMGVAVRTYFESPrhEDDYLESWLELWDRRGPgedrLLPGYGWIFGMGDGTSNVGLGVLNTs 249
Cdd:TIGR02032 145 GSRSIVAKKLG-LKKEPREYGVAARAEVEMP--DEEVDEDFVEVYIDRGI----VPGGYGWVFPKGDGTANVGVGSRSA- 216

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 250 dsFKELDWREVLKAWCASMPEdwgyTPENMTGPIRGAALPMAFNRQPHYTRGLLLVGDAGGLVNPFNGEGIAYAMESGQI 329
Cdd:TIGR02032 217 --EEGEDPKKYLKDFLARRPE----LKDAETVEVCGALIPIGRPDEKLVRGNVLLVGDAAGHVNPLTGEGIYYAMRSGDI 290


                  ....*
gi 1482411111 330 AADVI 334
Cdd:TIGR02032 291 AAEVV 295
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
17-359 1.88e-69

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 221.38  E-value: 1.88e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  17 AGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGLTPRAVKQLVAMGIDvSEEAGWLRNKGLRIIGGgvrlqlDWPDL 96
Cdd:COG0644     1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGGLLPRALEELEPLGLD-EPLERPVRGARFYSPGG------KSVEL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  97 ASFPDYGLVRKRDDFDEQLARQAQKAGARLYERCNVGAPITDErtGRITgVHAklgedKREVTFHAPLVVAADGNSTRLS 176
Cdd:COG0644    74 PPGRGGGYVVDRARFDRWLAEQAEEAGAEVRTGTRVTDVLRDD--GRVV-VRT-----GDGEEIRADYVVDADGARSLLA 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 177 LAMGLHRREDRP--MGVAVRTYFESPRHEDDYLESWLELWDRRGPGedrllpGYGWIFGMGDGTSNVGlgvlntsdsfke 254
Cdd:COG0644   146 RKLGLKRRSDEPqdYALAIKEHWELPPLEGVDPGAVEFFFGEGAPG------GYGWVFPLGDGRVSVG------------ 207

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 255 ldwrevlkawcasmpedwgytpenmtgpirgaaLPMAFNRQPHYTRGLLLVGDAGGLVNPFNGEGIAYAMESGQIAADVI 334
Cdd:COG0644   208 ---------------------------------IPLGGPRPRLVGDGVLLVGDAAGFVDPLTGEGIHLAMKSGRLAAEAI 254

                         330       340
                  ....*....|....*....|....*
gi 1482411111 335 VQAHARSTPAGRemALQRYPRVLKD 359
Cdd:COG0644   255 AEALEGGDFSAE--ALAEYERRLRE 277
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 9-353 3.68e-21

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 93.46  E-value: 3.68e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   9 TADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGLTPRAVKQLVAMGI--DVSEEAGWLRnkGLRII--- 83
Cdd:COG0654     3 RTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLwdRLLARGAPIR--GIRVRdgs 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  84 GGGVRLQLDWPDLASFPDYGLvrKRDDFDEQLARQAQKAGARLYERCNVGAPITDErtgriTGVHAKLgEDKREVTfhAP 163
Cdd:COG0654    81 DGRVLARFDAAETGLPAGLVV--PRADLERALLEAARALGVELRFGTEVTGLEQDA-----DGVTVTL-ADGRTLR--AD 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 164 LVVAADG-NSTrlslamglhrredrpmgvaVRTYFESPRHEDDYLESWLelwdrrgpgedrllpgygwifgmgdgtsnvg 242
Cdd:COG0654   151 LVVGADGaRSA-------------------VRRLLGIGFTGRDYPQRAL------------------------------- 180

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 243 lgvlntsdsfkeldWREVLKAWCASMpEDWGYTPENMTGPIRGAALPMAFNRQPHYTRG-LLLVGDAGGLVNPFNGEGIA 321
Cdd:COG0654   181 --------------WAGVRTELRARL-AAAGPRLGELLELSPRSAFPLRRRRAERWRRGrVVLLGDAAHTMHPLGGQGAN 245

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1482411111 322 YAMESGQIAADVIVQAHARSTPAGremALQRY 353
Cdd:COG0654   246 LALRDAAALAWKLAAALRGRDDEA---ALARY 274
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 10-324 7.96e-16

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 78.14  E-value: 7.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  10 ADVIVVGAGPAGSTTAYHLAKAGLDVLLLEK----TEFPRekvcGDGLTPRAVKQLVAMGIDVSEEAGWLRNKGLRIIGG 85
Cdd:pfam01494   2 TDVLIVGGGPAGLMLALLLARAGVRVVLVERhattSVLPR----AHGLNQRTMELLRQAGLEDRILAEGVPHEGMGLAFY 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  86 GVRLQLDWPDLASFPDYGLVrKRDDFDEQLARQAQKAGARLYERCNVGAPITDErtgriTGVHAKL--GEDKREVTFHAP 163
Cdd:pfam01494  78 NTRRRADLDFLTSPPRVTVY-PQTELEPILVEHAEARGAQVRFGTEVLSLEQDG-----DGVTAVVrdRRDGEEYTVRAK 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 164 LVVAADG-NST-RLSLAMGLHRREDRPMGVaVRTYFESPR----HEDDYLESWLELWDRRG----PGEDRLLPGYGWIFG 233
Cdd:pfam01494 152 YLVGCDGgRSPvRKTLGIEFEGFEGVPFGS-LDVLFDAPDlsdpVERAFVHYLIYAPHSRGfmvgPWRSAGRERYYVQVP 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 234 MGDgtsnvglGVLNTSDsfkELDWREVLKAWCASMPEDWGYTPenmtgPIRGAALPMAFNRQPHYTRG-LLLVGDAGGLV 312
Cdd:pfam01494 231 WDE-------EVEERPE---EFTDEELKQRLRSIVGIDLALVE-----ILWKSIWGVASRVATRYRKGrVFLAGDAAHIH 295

                         330
                  ....*....|..
gi 1482411111 313 NPFNGEGIAYAM 324
Cdd:pfam01494 296 PPTGGQGLNTAI 307
PLN00093 PLN00093
geranylgeranyl diphosphate reductase; Provisional
 2-383 9.99e-15

geranylgeranyl diphosphate reductase; Provisional


Pssm-ID: 177713 [Multi-domain]  Cd Length: 450  Bit Score: 75.56  E-value: 9.99e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   2 TEPLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKtEFPREKVCGdGLTPravkqLVAMG-IDVSEEAGWLRNKGL 80
Cdd:PLN00093   32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIER-KLDNAKPCG-GAIP-----LCMVGeFDLPLDIIDRKVTKM 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  81 RIIGGGvRLQLDWPDLASFPDY-GLVRkRDDFDEQLARQAQKAGARLYERCNVGAPITDERTGRITgVHAKLGEDKREV- 158
Cdd:PLN00093  105 KMISPS-NVAVDIGKTLKPHEYiGMVR-REVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYV-IHYTSYDSGSGAg 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 159 ---TFHAPLVVAADGNSTRLSLAMGLHrreDRPMGVAVRTYFESPRHEDDYLESWLELWdrrgPGEDRLLPGYGWIFGMG 235
Cdd:PLN00093  182 tpkTLEVDAVIGADGANSRVAKDIDAG---DYDYAIAFQERIKIPDDKMEYYEDLAEMY----VGDDVSPDFYGWVFPKC 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 236 DGTSnVGLG-VLNTSDsfkeldwrevLKAWCASMPEDWGytpENMTGP--IRGAALPMAFNRQPHYTRG-LLLVGDAGGL 311
Cdd:PLN00093  255 DHVA-VGTGtVVNKPA----------IKKYQRATRNRAK---DKIAGGkiIRVEAHPIPEHPRPRRVRGrVALVGDAAGY 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 312 VNPFNGEGIAYAMESGQIAADVIVQAHARSTPAGREMALQRYPRVLKDTYGGYYTL-------------GR-AFVKLIGN 377
Cdd:PLN00093  321 VTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVldilqkvfyrsnpAReAFVEMCAD 400


                  ....*.
gi 1482411111 378 PKVMKI 383
Cdd:PLN00093  401 EYVQKM 406
PRK06185 PRK06185
FAD-dependent oxidoreductase;
4-349 1.55e-14

FAD-dependent oxidoreductase;


Pssm-ID: 235729 [Multi-domain]  Cd Length: 407  Bit Score: 74.90  E-value: 1.55e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   4 PLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEK-TEFPREkVCGDGLTPRAVKQLVAMG-IDVSEEAGWLRNKGLR 81
Cdd:PRK06185    1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKhADFLRD-FRGDTVHPSTLELMDELGlLERFLELPHQKVRTLR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  82 IIGGGVRLQLdwPDLASFP---DYGLVRKRDDFDEQLARQAQK-AGARLYERCNVGAPITDErtGRITGVHAKLGEDkrE 157
Cdd:PRK06185   80 FEIGGRTVTL--ADFSRLPtpyPYIAMMPQWDFLDFLAEEASAyPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDG--P 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 158 VTFHAPLVVAADGNSTRLSLAMGLHRREdrpmgvavrtyFESPRhedDYLesWLELwdRRGPGEDRLLPGYgwiFGMGDg 237
Cdd:PRK06185  154 GEIRADLVVGADGRHSRVRALAGLEVRE-----------FGAPM---DVL--WFRL--PREPDDPESLMGR---FGPGQ- 211

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 238 tsnvGLGVLNTSD-----------SFKELDWR--EVLKAWCASM-PEdwgytPENMTGPIRG----AALPMAFNRQPHYT 299
Cdd:PRK06185  212 ----GLIMIDRGDywqcgyvipkgGYAALRAAglEAFRERVAELaPE-----LADRVAELKSwddvKLLDVRVDRLRRWH 282

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1482411111 300 R-GLLLVGDAGGLVNPFNGEGIAYAMESGQIAADVIVQAHARSTPAGREMA 349
Cdd:PRK06185  283 RpGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLA 333
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
9-335 7.79e-14

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 72.25  E-value: 7.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   9 TADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREK------VCGDGLTPRAVKQLVAM---------------GID 67
Cdd:COG0665     2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGAsgrnagQLRPGLAALADRALVRLarealdlwrelaaelGID 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  68 VS-EEAGWLR--------------NKGLRIIGGGVRLqLD-------WPDLASFPDYGLVRKRDDFD-------EQLARQ 118
Cdd:COG0665    82 CDfRRTGVLYlarteaelaalraeAEALRALGLPVEL-LDaaelrerEPGLGSPDYAGGLYDPDDGHvdpaklvRALARA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 119 AQKAGARLYERCNVGAPITDErtGRITGVHAKLGedkrevTFHAP-LVVAADGNSTRLSLAMGLhrredRPMGVAVRTY- 196
Cdd:COG0665   161 ARAAGVRIREGTPVTGLEREG--GRVTGVRTERG------TVRADaVVLAAGAWSARLLPMLGL-----RLPLRPVRGYv 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 197 --FESPrheDDYLESWLeLWDRRG----PGEDRLLPGYGWIFGMGDGTSNVGLGVLN---TSDSFKELDWREVLKAWCAS 267
Cdd:COG0665   228 lvTEPL---PDLPLRPV-LDDTGVylrpTADGRLLVGGTAEPAGFDRAPTPERLEALlrrLRRLFPALADAEIVRAWAGL 303

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482411111 268 MPedwgYTPENMtgPIRGAAlpmafnrqPHYtRGLLLvgdAGGlvnpFNGEGIAYAMESGQIAADVIV 335
Cdd:COG0665   304 RP----MTPDGL--PIIGRL--------PGA-PGLYV---ATG----HGGHGVTLAPAAGRLLADLIL 349
PRK10015 PRK10015
oxidoreductase; Provisional
 5-359 2.41e-12

oxidoreductase; Provisional


Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 68.08  E-value: 2.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   5 LSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREK-VCGDGLTPRAVKQLV-AMGIDVSEEAGWLRNKgLRI 82
Cdd:PRK10015    1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKnMTGGRLYAHTLEAIIpGFAASAPVERKVTREK-ISF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  83 IGGGVRLQLDW----PDLASFPDYGLVRKRddFDEQLARQAQKAGARLYERCNVGAPItdeRTG-RITGVHAklGEDKRE 157
Cdd:PRK10015   80 LTEESAVTLDFhreqPDVPQHASYTVLRNR--LDPWLMEQAEQAGAQFIPGVRVDALV---REGnKVTGVQA--GDDILE 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 158 vtfhAPLVVAADGNSTRLSLAMGLHRRED---RPMGVAVRTYFESPRHEDDYLESWLE--LWDRRGPGEDRLLPGyGWIF 232
Cdd:PRK10015  153 ----ANVVILADGVNSMLGRSLGMVPASDphhYAVGVKEVIGLTPEQINDRFNITGEEgaAWLFAGSPSDGLMGG-GFLY 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 233 GMGDGTSnVGL--GVLNTSDSFKEL-DWREVLKAWCASMPEDWGYTPENMTG---PIRGAAL-PMAFNrqphytRGLLLV 305
Cdd:PRK10015  228 TNKDSIS-LGLvcGLGDIAHAQKSVpQMLEDFKQHPAIRPLISGGKLLEYSAhmvPEGGLAMvPQLVN------DGVMIV 300

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1482411111 306 GDAGGL-VN-PFNGEGIAYAMESGQIAADVIVQAHAR-----STPAGREMALQRyPRVLKD 359
Cdd:PRK10015  301 GDAAGFcLNlGFTVRGMDLAIASAQAAATTVIAAKERadfsaSSLAQYKRELEQ-SCVMRD 360
PRK10157 PRK10157
putative oxidoreductase FixC; Provisional
 5-341 5.24e-11

putative oxidoreductase FixC; Provisional


Pssm-ID: 182273 [Multi-domain]  Cd Length: 428  Bit Score: 64.16  E-value: 5.24e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   5 LSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREK-VCGDGLTPRAVKQLVAMGIDVSEEAGWLRNKGLRII 83
Cdd:PRK10157    1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKnVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  84 GGGVRLQLDWPDL----ASFPDYGLVRKRddFDEQLARQAQKAGARLYERCNVGAPItdERTGRITGVHAKlGEdkrevT 159
Cdd:PRK10157   81 TEKSAMTMDYCNGdetsPSQRSYSVLRSK--FDAWLMEQAEEAGAQLITGIRVDNLV--QRDGKVVGVEAD-GD-----V 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 160 FHAPLVVAADGNSTRLSLAMGLHRR-EDRPMGVAVRTYFESPRhedDYLESWLELWDRRGPgedrllpgyGWIFGMGDGT 238
Cdd:PRK10157  151 IEAKTVILADGVNSILAEKLGMAKRvKPTDVAVGVKELIELPK---SVIEDRFQLQGNQGA---------ACLFAGSPTD 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 239 SNVGLGVLNTSDSFKELDW---REVLKAWCASMP---EDWGYTPenMTGP-IRGAAL--------PMA-FNRQPHYTR-G 301
Cdd:PRK10157  219 GLMGGGFLYTNENTLSLGLvcgLHHLHDAKKSVPqmlEDFKQHP--AVAPlIAGGKLveysahvvPEAgINMLPELVGdG 296

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1482411111 302 LLLVGDAGGLVNP--FNGEGIAYAMESGQIAADVIVQAHARS 341
Cdd:PRK10157  297 VLIAGDAAGMCMNlgFTIRGMDLAIAAGEAAAKTVLSAMKSD 338
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 11-332 2.38e-09

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 58.56  E-value: 2.38e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPRE-------KVCGDGLTPRAVKQLVAM---------------GIDV 68
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSgasgrnaGLIHPGLRYLEPSELARLalealdlweeleeelGIDC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  69 -------------SEEAGWLRNKGLRIIGGGVRLQLD-------WPDLASF------PDYGLVRkRDDFDEQLARQAQKA 122
Cdd:pfam01266  81 gfrrcgvlvlardEEEEALEKLLAALRRLGVPAELLDaeelrelEPLLPGLrgglfyPDGGHVD-PARLLRALARAAEAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 123 GARLYERCnvgaPITD-ERTGRITGVHaklgedkreVTFHAPLVVAADGNSTRLSLAMGLHRREDRPMGVAVRTyfeSPR 201
Cdd:pfam01266 160 GVRIIEGT----EVTGiEEEGGVWGVV---------TTGEADAVVNAAGAWADLLALPGLRLPVRPVRGQVLVL---EPL 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 202 HEDDYLESWLELWDRRG------PGEDRLLPGYGWIFGMGDGTSNVGLGVLNTSDSFKEL--DWREVLKAWCasmpedwG 273
Cdd:pfam01266 224 PEALLILPVPITVDPGRgvylrpRADGRLLLGGTDEEDGFDDPTPDPEEIEELLEAARRLfpALADIERAWA-------G 296

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1482411111 274 YTPENMTGPIRGaalpmafnrqPHYTRGLLLVGDAGGLvnpfngeGIAYAMESGQIAAD 332
Cdd:pfam01266 297 LRPLPDGLPIIG----------RPGSPGLYLATGHGGH-------GLTLAPGIGKLLAE 338
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 9-170 4.30e-09

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 58.31  E-value: 4.30e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   9 TADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPR-----------------EKVCG---------------DGLT-P 55
Cdd:COG1053     3 EYDVVVVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGghtaaaqgginaagtnvQKAAGedspeehfydtvkggDGLAdQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  56 RAVKQLVAMGIDVSEeagWLRNKglriiggGVRLQ-LDWPDLASFPDYGLVRKRDDFD-------EQLARQAQKAGARLY 127
Cdd:COG1053    83 DLVEALAEEAPEAID---WLEAQ-------GVPFSrTPDGRLPQFGGHSVGRTCYAGDgtghallATLYQAALRLGVEIF 152

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1482411111 128 ERCNVGAPITDErtGRITGVHAKlGEDKREVTFHAPLVVAADG 170
Cdd:COG1053   153 TETEVLDLIVDD--GRVVGVVAR-DRTGEIVRIRAKAVVLATG 192
PLN02985 PLN02985
squalene monooxygenase
 3-170 6.75e-08

squalene monooxygenase


Pssm-ID: 178566 [Multi-domain]  Cd Length: 514  Bit Score: 54.52  E-value: 6.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   3 EPLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGLTPRAVKQLVAMGI-DVSEEAGWLRNKGLR 81
Cdd:PLN02985   37 EERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLeDCLEGIDAQKATGMA 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  82 IIGGGVRLQLDWP-DLASFPDYGLVR--KRDDFDEQLARQAQKAGARLYERCNVGAPItdERTGRITGVHAKLGEDKrEV 158
Cdd:PLN02985  117 VYKDGKEAVAPFPvDNNNFPYEPSARsfHNGRFVQRLRQKASSLPNVRLEEGTVKSLI--EEKGVIKGVTYKNSAGE-ET 193

                         170
                  ....*....|..
gi 1482411111 159 TFHAPLVVAADG 170
Cdd:PLN02985  194 TALAPLTVVCDG 205
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 11-170 8.57e-08

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 53.83  E-value: 8.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPRE-------------------------------KVCGDGLTPRAVK 59
Cdd:pfam00890   1 DVLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGGatawssggidalgnppqggidspelhptdtlKGLDELADHPYVE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  60 QLVAmgiDVSEEAGWLRNKGLRIIG--GGVrlqLDWPDLASF------PDYGLVRKRDDFD-----EQLARQAQKAGARL 126
Cdd:pfam00890  81 AFVE---AAPEAVDWLEALGVPFSRteDGH---LDLRPLGGLsatwrtPHDAADRRRGLGTghallARLLEGLRKAGVDF 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1482411111 127 YERCNVGAPITDerTGRITGVHAKLGEDKREVTFHAP--LVVAADG 170
Cdd:pfam00890 155 QPRTAADDLIVE--DGRVTGAVVENRRNGREVRIRAIaaVLLATGG 198
COG2509 COG2509
FAD-dependent dehydrogenase [General function prediction only];
5-40 1.03e-07

FAD-dependent dehydrogenase [General function prediction only];


Pssm-ID: 441999 [Multi-domain]  Cd Length: 466  Bit Score: 53.96  E-value: 1.03e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1482411111   5 LSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:COG2509    26 IPSLKYDVVIVGAGPAGLFAALELAEAGLKPLVLER 61
Lycopene_cycl pfam05834
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ...
 11-373 3.41e-07

Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.


Pssm-ID: 310433 [Multi-domain]  Cd Length: 380  Bit Score: 52.03  E-value: 3.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHL--AKAGLDVLLLEKTE---FPREKV-CGDGLTPRAVKQLVamgidvseEAGWlrnKGLRiig 84
Cdd:pfam05834   1 DVVIIGAGPAGLSLAARLaaAKPGLSVVLIEPGPsllRPNNYVwSDEFEDLGALEDCV--------GHSW---PGTR--- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  85 ggVRLQLDWPDLASFPdYGLVRkRDDFDEQLARQAQKAGARLYercnvgapitDERTGRITGVHAKLG----EDKREVtf 160
Cdd:pfam05834  67 --VHFDDGKPILIGRA-YGRVS-SKRLEEEMLQRCVENGVIRL----------NAKVESVEADPVGESlvvcEGGRTI-- 130

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 161 HAPLVVAADGN-STRLSLAMGLHrredRPMGVAVRTyfESPRHEDDYleswLELWDRRGPGEDRlLPGYGWIFGMGDGTS 239
Cdd:pfam05834 131 RARLVFDARGLgSLPPGRTLGYQ----TFYGVEVEV--DNPPFDPDV----MVLMDARVPQPLK-GPTFLYALPLDPDRL 199

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 240 NVGLGVLNTSDSFKELDWREVLKAWCASM--------PEDWGYTPENMTGPIRG-AALPMAFnrqphytrglllvGDAGG 310
Cdd:pfam05834 200 LVEETYLSSGPVLPFDALKKRLAAYLRALgirilevvEEEQGVIPMTLGGDLPNtPQKVLRI-------------GAAAG 266

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1482411111 311 LVNPFNGEGIAYAMESGQIAADVIVQAHARSTPAGREmALQRYPRVLKDTYGGYYTLGRAFVK 373
Cdd:pfam05834 267 MVHPATGYSVARSLRLAPKLASAIAAALRLSSPSARA-WRDLWPRERWRQRGFFRLLGRMLFL 328
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 11-42 3.72e-07

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 52.14  E-value: 3.72e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTE 42
Cdd:COG1232     3 RVAVIGGGIAGLTAAYRLAKAGHEVTVLEASD 34
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 8-40 3.85e-07

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 52.16  E-value: 3.85e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1482411111   8 NTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:COG1233     2 MMYDVVVIGAGIGGLAAAALLARAGYRVTVLEK 34
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
11-71 4.68e-07

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 51.27  E-value: 4.68e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTE----------------FPrEKVCGDGLTPRAVKQLVAMGIDVSEE 71
Cdd:COG0492     2 DVVIIGAGPAGLTAAIYAARAGLKTLVIEGGEpggqlattkeienypgFP-EGISGPELAERLREQAERFGAEILLE 77
soxA_mon TIGR01377
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ...
 11-44 5.79e-07

sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]


Pssm-ID: 130444 [Multi-domain]  Cd Length: 380  Bit Score: 51.37  E-value: 5.79e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFP 44
Cdd:TIGR01377   2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP 35
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
14-56 6.14e-07

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 46.37  E-value: 6.14e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1482411111  14 VVGAGPAGSTTAYHLAKAGLDVLLLEKtefpREKVCGDGLTPR 56
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEK----RDRLGGNAYSYR 39
solA PRK11259
N-methyl-L-tryptophan oxidase;
11-40 6.47e-07

N-methyl-L-tryptophan oxidase;


Pssm-ID: 236887 [Multi-domain]  Cd Length: 376  Bit Score: 50.99  E-value: 6.47e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:PRK11259    5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDR 34
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
1-39 6.56e-07

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 51.46  E-value: 6.56e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1482411111   1 MTEPlsENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLE 39
Cdd:COG1231     1 MSRR--ARGKDVVIVGAGLAGLAAARELRKAGLDVTVLE 37
PRK08773 PRK08773
UbiH/UbiF family hydroxylase;
9-355 7.87e-07

UbiH/UbiF family hydroxylase;


Pssm-ID: 181552 [Multi-domain]  Cd Length: 392  Bit Score: 51.02  E-value: 7.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   9 TADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGL-----TPRAVKQLVAMGIdvseeagWLRNKGLRI- 82
Cdd:PRK08773    6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLrvyafAADNAALLDRLGV-------WPAVRAARAq 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  83 ---------IGGGVRLQLDwPDLASFPDYGLVRKRDDFDEQLARQAQKAGARLYERCNVGAPITDErtgriTGVHAKLGE 153
Cdd:PRK08773   79 pyrrmrvwdAGGGGELGFD-ADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA-----DRVRLRLDD 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 154 DKRevtFHAPLVVAADGNSTRLSLAMGL--HRREDRPMGVAVRTYFESPrHEDdyleswlELWDRRGP-GEDRLLPgygw 230
Cdd:PRK08773  153 GRR---LEAALAIAADGAASTLRELAGLpvSRHDYAQRGVVAFVDTEHP-HQA-------TAWQRFLPtGPLALLP---- 217

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 231 ifgMGDGTSNVgLGVLNTSDSFKELDW------REVLKAWCASMpedwgytpenmtGPIRGAALPMAF--NRQ--PHYTR 300
Cdd:PRK08773  218 ---FADGRSSI-VWTLPDAEAERVLALdeaafsRELTQAFAARL------------GEVRVASPRTAFplRRQlvQQYVS 281

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1482411111 301 G-LLLVGDAGGLVNPFNGEGIAYAMESGQIAADVIVQAHARSTPAGREMALQRYPR 355
Cdd:PRK08773  282 GrVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWAR 337
PTZ00367 PTZ00367
squalene epoxidase; Provisional
 11-336 1.61e-06

squalene epoxidase; Provisional


Pssm-ID: 240384 [Multi-domain]  Cd Length: 567  Bit Score: 50.23  E-value: 1.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPR-EKVCGDGLTPRAVKQLVAMGIDVSEEAGWLRNKGLRII-GGGVR 88
Cdd:PTZ00367   35 DVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKpDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFdHKGKQ 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  89 LQLDWPDLA---SFpDYGlvrkrdDFDEQLAR---QAQKAGARLYERcNVGAPITdERTG---RITGVHAKLGEDK---- 155
Cdd:PTZ00367  115 VKLPYGAGAsgvSF-HFG------DFVQNLRShvfHNCQDNVTMLEG-TVNSLLE-EGPGfseRAYGVEYTEAEKYdvpe 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 156 ------------------REVTfhAPLVVAADGNSTRLSlamglhRRedrpmgvaVRTYFESPRHEDDYLEswLELWDRR 217
Cdd:PTZ00367  186 npfredppsanpsattvrKVAT--APLVVMCDGGMSKFK------SR--------YQHYTPASENHSHFVG--LVLKNVR 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 218 GPGEdrllpGYGWIFGMGDG------TSNVGLGVLnTSDSFKELDWREVLKAWCAS--MPEdwgyTPENM---------- 279
Cdd:PTZ00367  248 LPKE-----QHGTVFLGKTGpilsyrLDDNELRVL-VDYNKPTLPSLEEQSEWLIEdvAPH----LPENMresfiraskd 317

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1482411111 280 TGPIRgaALPMAFnRQPHYT--RGLLLVGDAGGLVNPFNGEGIAYAMESGQIAADVIVQ 336
Cdd:PTZ00367  318 TKRIR--SMPNAR-YPPAFPsiKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 11-40 1.75e-06

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 49.86  E-value: 1.75e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:COG2072     8 DVVVIGAGQAGLAAAYHLRRAGIDFVVLEK 37
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 6-39 5.31e-06

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 48.67  E-value: 5.31e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1482411111   6 SENTADVIVVGAGPAGSTTAYHLAK-AGLDVLLLE 39
Cdd:COG2303     1 MLEEYDYVIVGAGSAGCVLANRLSEdAGLRVLLLE 35
PRK07208 PRK07208
hypothetical protein; Provisional
 11-42 6.31e-06

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 48.35  E-value: 6.31e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTE 42
Cdd:PRK07208    6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37
PRK06184 PRK06184
hypothetical protein; Provisional
 8-65 7.04e-06

hypothetical protein; Provisional


Pssm-ID: 235728 [Multi-domain]  Cd Length: 502  Bit Score: 48.06  E-value: 7.04e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1482411111   8 NTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGLTPR---------AVKQLVAMG 65
Cdd:PRK06184    2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRtqevfddlgVLDRVVAAG 68
Trp_halogenase pfam04820
Tryptophan halogenase; Tryptophan halogenase catalyzes the chlorination of tryptophan to form ...
 11-76 8.98e-06

Tryptophan halogenase; Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.


Pssm-ID: 398475 [Multi-domain]  Cd Length: 457  Bit Score: 47.71  E-value: 8.98e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKA---GLDVLLLEKTEFPREKVcGDGLTPRAVKQLVAMGIDvseEAGWLR 76
Cdd:pfam04820   1 KIVIVGGGTAGWMAAAALARAlkgGLDVTLVESEEIGTVGV-GEATIPSIRTFNRMLGID---EAEFLR 65
PRK09126 PRK09126
FAD-dependent hydroxylase;
8-355 1.41e-05

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 46.86  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   8 NTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTefPREKVCG---DG----LTPRAVKQLVAMGI-DVSEEAGWLRNKG 79
Cdd:PRK09126    2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQ--PLAALADpafDGreiaLTHASREILQRLGAwDRIPEDEISPLRD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  80 LRIIGGGVRLQLDWPDLASFPD---YgLVrkrddfDEQLARQAQKAGARLYERCNVgapITDERTGRITGvhaklGEDKR 156
Cdd:PRK09126   80 AKVLNGRSPFALTFDARGRGADalgY-LV------PNHLIRRAAYEAVSQQDGIEL---LTGTRVTAVRT-----DDDGA 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 157 EVTFH------APLVVAADG--NSTRLSLAMGLHRRE-DRPMGVAvRTYFESPRHEDDYleSWLelwdrrgpGEDR---L 224
Cdd:PRK09126  145 QVTLAngrrltARLLVAADSrfSATRRQLGIGADMHDfGRTMLVC-RMRHELPHHHTAW--EWF--------GYGQtlaL 213

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111 225 LPgygwifgMGDGTSNVglgVL----NTSDSFKELDwrevlkawcasmPEDWGytpENMTGPIRGAALPMAFNRQPH--- 297
Cdd:PRK09126  214 LP-------LNGHLSSL---VLtlppDQIEALLALD------------PEAFA---AEVTARFKGRLGAMRLVSSRHayp 268

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1482411111 298 ---------YTRGLLLVGDAGGLVNPFNGEGIAYAMESGQIAADVIVQAHARSTPAGREMALQRYPR 355
Cdd:PRK09126  269 lvavyahrfVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYER 335
PRK12843 PRK12843
FAD-dependent oxidoreductase;
3-43 1.46e-05

FAD-dependent oxidoreductase;


Pssm-ID: 237225 [Multi-domain]  Cd Length: 578  Bit Score: 47.04  E-value: 1.46e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1482411111   3 EPLSENTA-DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEF 43
Cdd:PRK12843    9 SPERWDAEfDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY 50
HI0933_like pfam03486
HI0933-like protein;
11-40 2.33e-05

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 46.42  E-value: 2.33e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:pfam03486   2 DVIVIGGGAAGLMAAISAAKRGRRVLLIEK 31
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
2-43 2.80e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 46.39  E-value: 2.80e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1482411111   2 TEPLSENTADV----IVVGAGPAGSTTAYHLAKAGLDVLLLEKTEF 43
Cdd:COG1148   129 LEPLEPIKVPVnkraLVIGGGIAGMTAALELAEQGYEVYLVEKEPE 174
GIDA pfam01134
Glucose inhibited division protein A;
11-38 4.15e-05

Glucose inhibited division protein A;


Pssm-ID: 250388 [Multi-domain]  Cd Length: 391  Bit Score: 45.62  E-value: 4.15e-05
                          10        20
                  ....*....|....*....|....*...
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLL 38
Cdd:pfam01134   1 DVIVIGGGHAGCEAALAAARMGAKVLLI 28
COG3573 COG3573
Predicted oxidoreductase [General function prediction only];
6-39 4.19e-05

Predicted oxidoreductase [General function prediction only];


Pssm-ID: 442794 [Multi-domain]  Cd Length: 551  Bit Score: 45.56  E-value: 4.19e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1482411111   6 SENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLE 39
Cdd:COG3573     2 AAMDADVIVVGAGLAGLVAAAELADAGRRVLLLD 35
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
2-211 4.48e-05

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 45.67  E-value: 4.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111   2 TEPLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEK--TEFPRekvcgdgltPRAV-------KQLVAMGID----- 67
Cdd:PRK06183    3 AQHPDAHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERwpTLYDL---------PRAVgiddealRVLQAIGLAdevlp 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  68 VSEEAGWLRnkgLRIIGGGVRLQLDWPDLAsfpDYGLvRKRDDFDEQLARQAQKAGARLYERCNV--GAPITD--ERTGR 143
Cdd:PRK06183   74 HTTPNHGMR---FLDAKGRCLAEIARPSTG---EFGW-PRRNAFHQPLLEAVLRAGLARFPHVRVrfGHEVTAltQDDDG 146

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1482411111 144 ITgVHAKlGEDKREVTFHAPLVVAADG-NSTrlslamglhrredrpmgvaVRTYFESPRHEDDYLESWL 211
Cdd:PRK06183  147 VT-VTLT-DADGQRETVRARYVVGCDGaNSF-------------------VRRTLGVPFEDLTFPERWL 194
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 11-40 4.59e-05

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 45.46  E-value: 4.59e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:COG1249     5 DLVVIGAGPGGYVAAIRAAQLGLKVALVEK 34
PRK12842 PRK12842
putative succinate dehydrogenase; Reviewed
 1-43 6.16e-05

putative succinate dehydrogenase; Reviewed


Pssm-ID: 237224 [Multi-domain]  Cd Length: 574  Bit Score: 45.07  E-value: 6.16e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1482411111   1 MTEPLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEF 43
Cdd:PRK12842    1 EECMTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
6-40 1.05e-04

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 44.37  E-value: 1.05e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1482411111   6 SENTADVIVVGAGPAGSTTAYHLAKA-GLDVLLLEK 40
Cdd:COG0579     1 MMEMYDVVIIGAGIVGLALARELSRYeDLKVLVLEK 36
PRK12834 PRK12834
putative FAD-binding dehydrogenase; Reviewed
 7-39 1.29e-04

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 183782 [Multi-domain]  Cd Length: 549  Bit Score: 44.12  E-value: 1.29e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1482411111   7 ENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLE 39
Cdd:PRK12834    2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLD 34
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 11-39 1.40e-04

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 43.46  E-value: 1.40e-04
                          10        20
                  ....*....|....*....|....*....
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLE 39
Cdd:pfam07992   2 DVVVIGGGPAGLAAALTLAQLGGKVTLIE 30
PLN02976 PLN02976
amine oxidase
 6-56 1.76e-04

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 44.09  E-value: 1.76e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1482411111    6 SENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKtefpREKVCGDGLTPR 56
Cdd:PLN02976   690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEA----RSRIGGRVYTDR 736
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
 11-41 1.83e-04

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 43.37  E-value: 1.83e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKT 41
Cdd:pfam12831   1 DVVVVGGGPAGVAAAIAAARAGAKVLLVERR 31
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
13-40 2.03e-04

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 43.50  E-value: 2.03e-04
                          10        20
                  ....*....|....*....|....*...
gi 1482411111  13 IVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:COG2081     1 IVIGAGAAGLMAAITAAERGARVLLLEK 28
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 6-42 2.41e-04

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 43.17  E-value: 2.41e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1482411111   6 SENTADVIVVGAGPAGSTTAYHLAKAGlDVLLLEKTE 42
Cdd:COG0029     1 ERLKTDVLVIGSGIAGLSAALKLAERG-RVTLLTKGE 36
PRK08244 PRK08244
monooxygenase;
11-170 2.65e-04

monooxygenase;


Pssm-ID: 236199 [Multi-domain]  Cd Length: 493  Bit Score: 43.19  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFPREKVCGDGLTPRAVKQLVAMGIDVSeeagwLRNKGLRIIGG---GV 87
Cdd:PRK08244    4 EVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLER-----FLEKGRKLPSGhfaGL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  88 RLQLDWPDLASFPDYGLVRKRDDFDEQLARQAQKAGARLYERCNVGAPITDErtgriTGVHAKLGEDKREVTFHAPLVVA 167
Cdd:PRK08244   79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG-----DGVEVVVRGPDGLRTLTSSYVVG 153


                  ...
gi 1482411111 168 ADG 170
Cdd:PRK08244  154 ADG 156
Thi4 pfam01946
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
 10-40 2.81e-04

Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.


Pssm-ID: 460393  Cd Length: 232  Bit Score: 42.07  E-value: 2.81e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1482411111  10 ADVIVVGAGPAGSTTAYHLAKA-GLDVLLLEK 40
Cdd:pfam01946  18 SDVVIVGAGSSGLTAAYYLAKNrGLKVAIIER 49
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 12-68 2.96e-04

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 42.81  E-value: 2.96e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1482411111  12 VIVVGAGPAGSTTAYHLAKAGLDVLLLEK------------TEF--PREKVcgDgltpRAVKQLVAMGIDV 68
Cdd:COG0493   124 VAVVGSGPAGLAAAYQLARAGHEVTVFEAldkpggllrygiPEFrlPKDVL--D----REIELIEALGVEF 188
PRK07804 PRK07804
L-aspartate oxidase; Provisional
 1-40 3.96e-04

L-aspartate oxidase; Provisional


Pssm-ID: 236102 [Multi-domain]  Cd Length: 541  Bit Score: 42.65  E-value: 3.96e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1482411111   1 MTEPLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:PRK07804    8 APAPGWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTK 47
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 11-44 4.22e-04

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 42.53  E-value: 4.22e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFP 44
Cdd:COG3349     5 RVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRL 38
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 11-40 6.35e-04

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 41.70  E-value: 6.35e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:PRK06292    5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK 34
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 12-68 6.64e-04

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 41.78  E-value: 6.64e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1482411111  12 VIVVGAGPAGSTTAYHLAKAGLDVLLLEKTE--------------FPREKVCGDgltpraVKQLVAMGIDV 68
Cdd:PRK12771  140 VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPklggmmrygipayrLPREVLDAE------IQRILDLGVEV 204
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
11-40 1.27e-03

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 40.91  E-value: 1.27e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:PRK05249    7 DLVVIGSGPAGEGAAMQAAKLGKRVAVIER 36
PRK07233 PRK07233
hypothetical protein; Provisional
 14-44 1.29e-03

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 41.03  E-value: 1.29e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1482411111  14 VVGAGPAGSTTAYHLAKAGLDVLLLEKTEFP 44
Cdd:PRK07233    4 IVGGGIAGLAAAYRLAKRGHEVTVFEADDQL 34
PRK07843 PRK07843
3-oxosteroid 1-dehydrogenase;
4-42 1.33e-03

3-oxosteroid 1-dehydrogenase;


Pssm-ID: 236111 [Multi-domain]  Cd Length: 557  Bit Score: 40.79  E-value: 1.33e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1482411111   4 PLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTE 42
Cdd:PRK07843    2 AMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAP 40
PRK12409 PRK12409
D-amino acid dehydrogenase small subunit; Provisional
 12-44 1.62e-03

D-amino acid dehydrogenase small subunit; Provisional


Pssm-ID: 237093 [Multi-domain]  Cd Length: 410  Bit Score: 40.39  E-value: 1.62e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1482411111  12 VIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFP 44
Cdd:PRK12409    4 IAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36
PRK06847 PRK06847
hypothetical protein; Provisional
 11-200 1.83e-03

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 40.24  E-value: 1.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTefPREKVCGDGLTP-----RAVKQLvamGI--DVSEEAGWLRNKGLRII 83
Cdd:PRK06847    6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEID--PEWRVYGAGITLqgnalRALREL---GVldECLEAGFGFDGVDLFDP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  84 GGGVRLQLDWPDLASfPDY----GLVRKRddFDEQLARQAQKAGARLYERCNVGApITDErtgritgvhaklgEDKREVT 159
Cdd:PRK06847   81 DGTLLAELPTPRLAG-DDLpgggGIMRPA--LARILADAARAAGADVRLGTTVTA-IEQD-------------DDGVTVT 143

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1482411111 160 F------HAPLVVAADG-NSTRLSLAMGlHRREDRPMGVAV-RTYFESP 200
Cdd:PRK06847  144 FsdgttgRYDLVVGADGlYSKVRSLVFP-DEPEPEYTGQGVwRAVLPRP 191
PRK00711 PRK00711
D-amino acid dehydrogenase;
12-44 2.10e-03

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 40.17  E-value: 2.10e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1482411111  12 VIVVGAGPAGSTTAYHLAKAGLDVLLLEKTEFP 44
Cdd:PRK00711    3 VVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 6-40 2.24e-03

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 40.13  E-value: 2.24e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1482411111   6 SENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEK 40
Cdd:PRK06416    1 FAFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEK 35
PRK05335 PRK05335
tRNA (uracil-5-)-methyltransferase Gid; Reviewed
 12-61 2.41e-03

tRNA (uracil-5-)-methyltransferase Gid; Reviewed


Pssm-ID: 235416  Cd Length: 436  Bit Score: 40.13  E-value: 2.41e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1482411111  12 VIVVGAGPAGSTTAYHLAKAGLDVLLLE----------KTEFPREKVC-----GDGLTpRAVKQL 61
Cdd:PRK05335    5 VNVIGAGLAGSEAAWQLAKRGVPVELYEmrpvkktpahHTDGFAELVCsnsfrSDSLT-NAVGLL 68
TrmFO COG1206
Folate-dependent tRNA-U54 methylase TrmFO/GidA [Translation, ribosomal structure and ...
 11-49 3.15e-03

Folate-dependent tRNA-U54 methylase TrmFO/GidA [Translation, ribosomal structure and biogenesis]; Folate-dependent tRNA-U54 methylase TrmFO/GidA is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440819  Cd Length: 436  Bit Score: 39.66  E-value: 3.15e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLE----------KTEFPREKVC 49
Cdd:COG1206     3 PVTVIGGGLAGSEAAWQLAERGVPVRLYEmrpvkmtpahKTDGFAELVC 51
carotene-cycl TIGR01790
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases ...
 11-39 3.28e-03

lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.


Pssm-ID: 130850 [Multi-domain]  Cd Length: 388  Bit Score: 39.34  E-value: 3.28e-03
                          10        20
                  ....*....|....*....|....*....
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAGLDVLLLE 39
Cdd:TIGR01790   1 DLAVIGGGPAGLAIALELARPGLRVQLIE 29
PRK05714 PRK05714
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
 294-355 4.67e-03

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional


Pssm-ID: 168201 [Multi-domain]  Cd Length: 405  Bit Score: 39.04  E-value: 4.67e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1482411111 294 RQPHYTR----GLLLVGDAGGLVNPFNGEGIAYAMESGQIAADVIVQAHARSTPAGREMALQRYPR 355
Cdd:PRK05714  275 RQRHAKRyvepGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFER 340
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 12-68 4.79e-03

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 39.01  E-value: 4.79e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1482411111  12 VIVVGAGPAGSTTAYHLAKAGLDVLLLEKtefpREKVCG------------DGLTPRAVKQLVAMGIDV 68
Cdd:PRK11749  143 VAVIGAGPAGLTAAHRLARKGYDVTIFEA----RDKAGGllrygipefrlpKDIVDREVERLLKLGVEI 207
PLN02576 PLN02576
protoporphyrinogen oxidase
 6-50 5.15e-03

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 38.84  E-value: 5.15e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1482411111   6 SENTADVIVVGAGPAGSTTAYHLAKA-GLDVLLLEKtefpREKVCG 50
Cdd:PLN02576    9 AASSKDVAVVGAGVSGLAAAYALASKhGVNVLVTEA----RDRVGG 50
PRK11445 PRK11445
FAD-binding protein;
11-66 7.51e-03

FAD-binding protein;


Pssm-ID: 183139 [Multi-domain]  Cd Length: 351  Bit Score: 38.12  E-value: 7.51e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482411111  11 DVIVVGAGPAGSTTAYHLAKAgLDVLLLEK-TEFPRE---KVCGDGLTPRAVKQLVAMGI 66
Cdd:PRK11445    3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKkHQCGTEgfsKPCGGLLAPDAQKSFAKDGL 61
PRK12831 PRK12831
putative oxidoreductase; Provisional
 3-39 7.52e-03

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 38.46  E-value: 7.52e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1482411111   3 EPLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLE 39
Cdd:PRK12831  134 ETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFE 170
PRK07364 PRK07364
FAD-dependent hydroxylase;
4-48 7.54e-03

FAD-dependent hydroxylase;


Pssm-ID: 236001 [Multi-domain]  Cd Length: 415  Bit Score: 38.46  E-value: 7.54e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1482411111   4 PLSENTADVIVVGAGPAGSTTAYHLAKAGLDVLLLEKTefPREKV 48
Cdd:PRK07364   13 STRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQ--PAEAA 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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