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Conserved domains on  [gi|1482033296|gb|AYC12588|]
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NADH dehydrogenase subunit 4, partial [Lerista storri]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-229 1.58e-133

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 383.39  E-value: 1.58e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00124  229 MVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00124  309 LSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 229
Cdd:MTH00124  389 SPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-229 1.58e-133

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 383.39  E-value: 1.58e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00124  229 MVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00124  309 LSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 229
Cdd:MTH00124  389 SPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-230 9.74e-47

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 161.02  E-value: 9.74e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:COG1008   245 VLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPL 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:COG1008   325 GLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQ 404

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1482033296 160 WSNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMGPF 230
Cdd:COG1008   405 VNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-172 3.33e-41

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 142.07  E-value: 3.33e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:pfam00361 118 ALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLA-NTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:pfam00361 198 IQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277

                         170
                  ....*....|...
gi 1482033296 160 WSNPTIIMTGLGT 172
Cdd:pfam00361 278 ASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-230 8.44e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 145.08  E-value: 8.44e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:TIGR01972 239 VILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLaALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNEL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:TIGR01972 319 GISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFK 398

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1482033296 160 WSNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEP-THTREHLLMALHTIPMLLLMLKPQLIMGPF 230
Cdd:TIGR01972 399 VNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPdLNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-229 1.58e-133

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 383.39  E-value: 1.58e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00124  229 MVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00124  309 LSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 229
Cdd:MTH00124  389 SPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-230 1.68e-124

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 360.39  E-value: 1.68e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00068  229 MILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00068  309 FSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNW 388

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMGPF 230
Cdd:MTH00068  389 SNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-229 1.60e-121

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 353.04  E-value: 1.60e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00110  229 MVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00110  309 FMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSW 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 229
Cdd:MTH00110  389 SNITIILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGP 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-228 4.11e-99

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 295.71  E-value: 4.11e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00127  230 MVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWG 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00127  310 FTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNW 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMG 228
Cdd:MTH00127  390 SPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-226 2.05e-91

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 275.66  E-value: 2.05e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00206  225 MVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWG 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00206  305 FKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSW 384

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLI 226
Cdd:MTH00206  385 SNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-227 4.91e-76

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 236.41  E-value: 4.91e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLS-PLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:MTH00044  230 MILAAILLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNW 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:MTH00044  310 GINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIIS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482033296 160 WSNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIM 227
Cdd:MTH00044  390 WSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-227 1.21e-67

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 214.63  E-value: 1.21e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00163  217 MILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWG 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00163  297 LMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISW 376

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIM 227
Cdd:MTH00163  377 SKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-228 1.01e-63

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 203.53  E-value: 1.01e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00150  188 MILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWG 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00150  268 WVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISY 347

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMG 228
Cdd:MTH00150  348 SPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFM 415
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-227 2.76e-57

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 187.88  E-value: 2.76e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00205  221 MILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWG 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00205  301 MNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSS 380

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIM 227
Cdd:MTH00205  381 SKISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-226 9.85e-56

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 183.79  E-value: 9.85e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00014  223 MILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWG 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00014  303 WQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSS 382

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLI 226
Cdd:MTH00014  383 SLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-230 9.74e-47

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 161.02  E-value: 9.74e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:COG1008   245 VLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPL 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:COG1008   325 GLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQ 404

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1482033296 160 WSNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMGPF 230
Cdd:COG1008   405 VNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-172 3.33e-41

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 142.07  E-value: 3.33e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:pfam00361 118 ALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLA-NTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:pfam00361 198 IQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277

                         170
                  ....*....|...
gi 1482033296 160 WSNPTIIMTGLGT 172
Cdd:pfam00361 278 ASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-230 8.44e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 145.08  E-value: 8.44e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:TIGR01972 239 VILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLaALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNEL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:TIGR01972 319 GISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFK 398

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1482033296 160 WSNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEP-THTREHLLMALHTIPMLLLMLKPQLIMGPF 230
Cdd:TIGR01972 399 VNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPdLNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-231 8.94e-39

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 139.95  E-value: 8.94e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:PRK05846  247 VLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIItLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQL 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:PRK05846  327 GIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQ 406

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1482033296 160 WSNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMGPFS 231
Cdd:PRK05846  407 VNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPKPLLDVIH 478
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 2-229 8.45e-37

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 134.42  E-value: 8.45e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRITPMLSPLTTNMYYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00204  246 ILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVmLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00204  326 LVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEY 405

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMGP 229
Cdd:MTH00204  406 SLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFIIIDL 474
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 2-183 2.22e-35

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 130.56  E-value: 2.22e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRITPMLSPLTTNMYYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00217  243 ILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIqTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQG 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00217  323 LVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEY 402

                         170       180
                  ....*....|....*....|...
gi 1482033296 161 SNPTIIMTGLGTLLTATYSLHMF 183
Cdd:MTH00217  403 SYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-227 2.83e-31

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 119.64  E-value: 2.83e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFII-LATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:MTH00226  266 VLLAGILLKLGGYGLVRLSWPILPLGAQNLAPAVIaMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDII 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:MTH00226  346 GLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFN 425

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482033296 160 WSNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIM 227
Cdd:MTH00226  426 WNPIIGVFVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRREFYITASMVFFAFLIGIYPIFIL 493
ndhD CHL00011
NADH dehydrogenase subunit 4
 1-182 7.26e-25

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 101.56  E-value: 7.26e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPF-IILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:CHL00011  247 MLLAGILLKMGAYGLIRINMELLPHAHSIFSPWlVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDT 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERThsRTLLLAR--GLQLVLPLMTSWWLLANLMNMALPPTINITGELL----I 153
Cdd:CHL00011  327 GLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgI 404

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1482033296 154 MTATFNWSNPTIIMT---GLGTLLTATYSLHM 182
Cdd:CHL00011  405 ITSQKYLLMPKILITfvmAIGMILTPIYLLSM 436
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
1-224 7.39e-23

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 95.92  E-value: 7.39e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFiiLATWGIIMT---STICLRQTDLKSLIAYSSVSHMGLVIAASLIQT 77
Cdd:PRK06473  241 VLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMGYILLAAAAAT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  78 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGL---QLVLPLMTSWWLLANLMNMALPPTINITGELLIM 154
Cdd:PRK06473  319 PLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGFIAEFLVF 398

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296 155 TATFNWSNPTIIMTGLGTLLTATYSLHMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQ 224
Cdd:PRK06473  399 RGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVLWSERLPALVLAVLIVVLGIQPS 468
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-182 2.80e-22

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 94.33  E-value: 2.80e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYP-FIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:PRK12561  221 MILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDL 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLI---MTA 156
Cdd:PRK12561  301 GISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVflgITS 380

                         170       180       190
                  ....*....|....*....|....*....|
gi 1482033296 157 TFNWSNP----TIIMTGLGTLLTATYSLHM 182
Cdd:PRK12561  381 SDVYSSTfrtiTILLAAVGLILTPIYLLSM 410
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-187 5.16e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 93.29  E-value: 5.16e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRITPMLSPLTTNMY--YPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:COG0651   242 LLSGLLTKVGVYAILRVLTLLFGADPALFlgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:COG0651   322 GLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALE 401

                         170       180
                  ....*....|....*....|....*....
gi 1482033296 160 WSNPTIIMTGL-GTLLTATYSLHMFLMTQ 187
Cdd:COG0651   402 AGAWLLAAVLLlSSLLTLAYFVRIFGRAQ 430
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-226 1.25e-21

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 92.46  E-value: 1.25e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYP-FIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:PRK02546  249 MLLAGILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDL 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMT--AT 157
Cdd:PRK02546  329 GTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFVgfAT 408

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296 158 FNWSNPT-----IIMTGLGTLLTATYSLHM----FLMTQRGKLTVH--MTNTEPthtREHLLMALHTIPMLLLMLKPQLI 226
Cdd:PRK02546  409 SDAYTLPfrvvvVFLAAVGVILTPIYLLSMlreiFFGPENKELVSHekLVDAEP---REVFIIACLLVPIIGIGLYPKLV 485
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-180 2.18e-20

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 88.43  E-value: 2.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRItpMLSPLTTNMYYpFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWS 80
Cdd:MTH00094  187 MLLAGLLLKLGTAGFLRI--LGSLNFVYNNF-WIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSG 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:MTH00094  264 KLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMK 343

                         170       180
                  ....*....|....*....|
gi 1482033296 161 SNPTIIMTGLGTLLTATYSL 180
Cdd:MTH00094  344 NKFSFFFIFFYFLVSFYYSL 363
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-191 3.11e-15

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 73.98  E-value: 3.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPfiILATWGIIMT---STICLRQTDLKSLIAYSSVSHMGLVIAASLIQT 77
Cdd:PRK07363  241 ILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  78 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQ---LVLPLMTSWWLLANLMNMALPPTINITGELLIM 154
Cdd:PRK07363  319 QLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMnpiRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVF 398

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1482033296 155 TATFNWSNPTIIMTGLGTLLTATYSLHMFLMTQRGKL 191
Cdd:PRK07363  399 QGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRL 435
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-178 1.08e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 72.22  E-value: 1.08e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRIT----PMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQT 77
Cdd:PRK08375  239 LLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  78 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTAT 157
Cdd:PRK08375  319 PLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA 398

                         170       180
                  ....*....|....*....|..
gi 1482033296 158 FN-WSNPTIIMTGLGTLLTATY 178
Cdd:PRK08375  399 VEaGQWLVLAVLLASSLLALLY 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-221 3.68e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 70.77  E-value: 3.68e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRI-------TPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASL 74
Cdd:PRK12667  260 MLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIG 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  75 IQTQWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIM 154
Cdd:PRK12667  340 IGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLF 419

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482033296 155 TATFNWSNPT-IIMTGLGTLLTATYSLHMFLMTQRGKLTVHmtntEPTHTREHLLMALHTIPMLLLML 221
Cdd:PRK12667  420 NALLESGFYLpALVLLIASAISLVGYFRAWYSLFFGKPKSG----EEVEHKESPSMSVVILVLALAVL 483
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 2-228 5.05e-12

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 64.57  E-value: 5.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRITPMLSPLTTNMYYP--FIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:PRK06458  251 LLSGVLLNVALYAVLRYYILIDAAIGSDFPGrlLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPL 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:PRK06458  331 GIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLA 410

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1482033296 160 ---WSNPTIIMTGLGTLLTAtyslhMFLMTQRgkltvHMTNTEPTHTREHLLMALHTIPMLLLMLKPqLIMG 228
Cdd:PRK06458  411 rgpLLIAILLLLLLTLAFAA-----LVRRVAG-----MVFGEPPEAVNRGDLGWLTTSPMFVHLVLV-LVLG 471
PRK12650 PRK12650
DUF4040 family protein;
4-180 5.26e-12

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 64.68  E-value: 5.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   4 AAILLKLGGYGIIRITPMLSPLTTnMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTG 83
Cdd:PRK12650  247 AAAVVKAGIYLLLRFSPVFHDVAV-WNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  84 AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTIN-ITGELLI---MTATFN 159
Cdd:PRK12650  326 AVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGfVSKEGMLtafLEAPGG 405

                         170       180
                  ....*....|....*....|...
gi 1482033296 160 WSNPTIIM--TGLGTLLTATYSL 180
Cdd:PRK12650  406 NAGVVLLLvgAALGAVFTFAYSA 428
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 4-221 7.01e-11

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 61.32  E-value: 7.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   4 AAILLKLGGYGIIRITPMLSpLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQtqwSLTG 83
Cdd:COG1009   250 AATMVKAGVYLLARLSPLFA-LSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  84 AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNWSNP 163
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGL 405

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1482033296 164 TIIMTGLGTL---LTATYSLHMFLMTQRGKLTVHmtntEPTHTRE-HLLMalhTIPMLLLML 221
Cdd:COG1009   406 GPLLLAVALLgafLTAFYSFRLFFLVFFGKPRPK----TPKHPHEsPWLM---TLPLVVLAV 460
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 5-173 9.61e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 58.01  E-value: 9.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   5 AILLKLGGYGIIRITPMLSplttNMYYPFIILATWG---IIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 81
Cdd:PRK12647  235 ATMVKAGIYLLARLNPVLG----GTPLWQTILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAI 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  82 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNWS 161
Cdd:PRK12647  311 KAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAP 390

                         170
                  ....*....|..
gi 1482033296 162 NPTIIMTGLGTL 173
Cdd:PRK12647  391 LWSLILTVAAVL 402
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 4-159 6.04e-09

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 55.54  E-value: 6.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   4 AAILLKLGGYGIIRITPMLSPLT--TNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 81
Cdd:PRK08377  245 SAFVVKAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGV 324

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482033296  82 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFN 159
Cdd:PRK08377  325 DAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLS 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-185 9.87e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 54.82  E-value: 9.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   4 AAILLKLGGYGIIRITPM---LSPLTT--NMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQ 78
Cdd:PRK06589  249 AVIVVKTGLFCIYKILLYifgLSYLQRifAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTP 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  79 WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATF 158
Cdd:PRK06589  329 KALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAAS 408

                         170       180
                  ....*....|....*....|....*....
gi 1482033296 159 NWSNPT--IIMTGLGTLLTATYSLHMFLM 185
Cdd:PRK06589  409 EQNQPWlsIIVMLVVIASSILSALYLLKI 437
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-157 6.64e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 52.43  E-value: 6.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  33 FIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGAIVLMVAHGLTSSMLFCLANT---NYERT 109
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTT 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1482033296 110 HSRTLLlarGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTAT 157
Cdd:PRK12662  362 KLEDCL---NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAF 406
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 2-99 3.77e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.14  E-value: 3.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRITPML--SPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQW 79
Cdd:PRK08676  243 LLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPL 322

                          90       100
                  ....*....|....*....|
gi 1482033296  80 SLTGAIVLMVAHGLTSSMLF 99
Cdd:PRK08676  323 ALFWMLFHMLAHSLVKSGLF 342
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 4-174 1.65e-06

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 48.05  E-value: 1.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   4 AAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMG---LVIAASLIQTQWS 80
Cdd:PRK06525  246 AASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGymfFGLSLAILGSRLA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  81 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNW 160
Cdd:PRK06525  326 LEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFEL 405

                         170
                  ....*....|....
gi 1482033296 161 SNPTIIMTGLGTLL 174
Cdd:PRK06525  406 SVEYWILLPAMVLL 419
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-180 2.65e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.61  E-value: 2.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   4 AAILLKLGGYGIIRITPMLSPLTTnMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTG 83
Cdd:PRK12644  242 AAAMVKAGIYLVARLAPGFADVPV-WRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALA 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  84 AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLAnLMNMA-LPPTINITG-----ELLIMTAT 157
Cdd:PRK12644  321 GLAMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAVVAALA-AASMAgLPPLLGFVAkeaalEAVLHDGA 399

                         170       180
                  ....*....|....*....|....
gi 1482033296 158 FNWSNP-TIIMTGLGTLLTATYSL 180
Cdd:PRK12644  400 LGPAGPvVLAGIVLGSILTVAYSL 423
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 2-158 2.74e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 47.42  E-value: 2.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRItpMLSPLTTNMYYPFIIL------ATWGIIMTsticLRQTDLKSLIAYSSVSHMGLV---IAA 72
Cdd:PRK08667  242 LMSGVMLKVAVYGLVRF--LMDVLSPELWWGVLILlagsisALLGVIYA----LKEHDLKGLLAYSSIENIGIIlmgIGL 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  73 SLIQTQW--------SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPT 144
Cdd:PRK08667  316 YVIFGVYgldtlallALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPF 395

                         170
                  ....*....|....
gi 1482033296 145 INITGELLIMTATF 158
Cdd:PRK08667  396 NGFASELLLYESFF 409
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-172 2.94e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 47.25  E-value: 2.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRITPMLSplttNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIqtqwsl 81
Cdd:PRK07234  221 LLSGVVVKAGVFPLVRCALDVP----GLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV------ 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  82 tgAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLmtswwLLANLMNMALPPTINITGELLIMTATFNWS 161
Cdd:PRK07234  291 --GGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPL-----TMASFSIAGFPLLAGFVSKVLTLKNLLPWQ 363

                         170
                  ....*....|.
gi 1482033296 162 NPTIIMTGLGT 172
Cdd:PRK07234  364 AIALNLAAVGT 374
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-185 5.12e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 46.48  E-value: 5.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   4 AAILLKLGGYGIIRITPMLSPLTTNMYYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLT 82
Cdd:PRK07691  248 GALLTKVGVYAIARTFTLFFSHDTSFTHYLIlILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMI 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  83 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNWSN 162
Cdd:PRK07691  328 GAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGF 407

                         170       180
                  ....*....|....*....|....
gi 1482033296 163 PTIIMTGLGTLLTATYS-LHMFLM 185
Cdd:PRK07691  408 YVSGIIVLLSSLLVLYSvIKIFLK 431
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-95 7.26e-06

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 46.35  E-value: 7.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   9 KLGGYGII-RITPM-LSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGAIV 86
Cdd:PRK05777  247 KIAAFAVLlRLLVVaFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLF 326


                  ....*....
gi 1482033296  87 LMVAHGLTS 95
Cdd:PRK05777  327 YLLAYLFMT 335
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-99 3.84e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.22  E-value: 3.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYG------IIRITPMLSPLTTNM-----YYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVI 70
Cdd:PRK08668  233 VLSGQLSKLGAYGfllvlyVLPGTKLFSEFGTYRgvplfNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYIL 312

                          90       100
                  ....*....|....*....|....*....
gi 1482033296  71 AASLIQTQWSLTGAIVLMVAHGLTSSMLF 99
Cdd:PRK08668  313 VGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-95 4.47e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 43.95  E-value: 4.47e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1482033296  22 LSPLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGAIVLMVAHGLTS 95
Cdd:COG1007   261 FPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334
PRK12646 PRK12646
DUF4040 family protein;
4-220 6.79e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 43.59  E-value: 6.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   4 AAILLKLGGYGIIRITPMLSpLTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLV-----IAASLIQTQ 78
Cdd:PRK12646  249 SATMVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMImamvgIGGGYAQHQ 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  79 ---------WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLAnLMNMALPPTIN--- 146
Cdd:PRK12646  328 qdaiasiyvFVLFAALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIA-ALSMAGVPFLNgfl 406

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296 147 ----------ITGELLIMTATFnwsnpTIIMTGLG---TLLTATYSLHMFLMTQRGKLTVHMTNTEPTHtrEHLLMALHT 213
Cdd:PRK12646  407 skemfldaltQTGQLSQFSLIS-----MIIIVFIGviaSIFTFTYALYMVKEVFWGKYDSKVFTKKNIH--EPWLFSLPS 479


                  ....*..
gi 1482033296 214 IPMLLLM 220
Cdd:PRK12646  480 LILMVLV 486
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-158 7.11e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 43.16  E-value: 7.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  11 GGYGIIRITPMLSPLTTNMY---YPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMG---------LVIAASLIQTQ 78
Cdd:PRK08376  265 GLYALARVLFSIYGPAINLAtvgWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGymllglgvgLAALGDPAMAS 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  79 W---SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMT 155
Cdd:PRK08376  345 YgeiALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE 424


                  ...
gi 1482033296 156 ATF 158
Cdd:PRK08376  425 SSA 427
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
4-228 1.25e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 1.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   4 AAILLKLGGYGIIRITPMLSPLTTNMYYPFI-ILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLT 82
Cdd:PRK12663  245 AALLTKVGIYALIRVFTLLFPQERELLHPLLaTMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIN 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  83 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNWSN 162
Cdd:PRK12663  325 GAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGA 404

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1482033296 163 PTIIMTGLGTLLTATYSL-HMFLMTQRGKLTVHMTNTEPTHTREHLLMALHTIPMLLLMLKPQLIMG 228
Cdd:PRK12663  405 YILLALMLITSLITMYSLfRIFFLAYWGDKDGEEVNFKPIPLYRKLPLSILAVVVIAMGIAAEPLLN 471
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-167 1.71e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.94  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  34 IILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRT 113
Cdd:PRK06277  270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1482033296 114 LLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLIMTATFNWSNP--TIIM 167
Cdd:PRK06277  350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPelAIIM 405
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 1-153 4.99e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 40.68  E-value: 4.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSPLTTNMYYPFIILATWGIIMTSticLRQTDLKSLIAYSSVSHMgLVIAASLIQTQWS 80
Cdd:MTH00062  201 IFLSGYIMKLGLLGVYRFCGFIFSGSFLGYLFLCCLFSVFFLITA---CSELDGKRWLAFLSLSHI-LVPVLGLFVGDWS 276

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1482033296  81 LTG-AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINITGELLI 153
Cdd:MTH00062  277 SINlSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFL 350
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 11-143 1.72e-03

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 39.12  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  11 GGYGIIRITPM--LSPLTTNMyypFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLV-IAASLIQTQWsltgAIVL 87
Cdd:PRK07390  266 GAWVLIKLQPVlaLSPVALTV---LIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVfIAVGLQQPDI----ALLL 338

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1482033296  88 MVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPP 143
Cdd:PRK07390  339 LLTHAIAKALLFMSVGSIILTTITQDLTELGGLWSRMPATTLAFLVGSAGLVALLP 394
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 5-111 2.52e-03

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 38.39  E-value: 2.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   5 AILLKLGGYGIIRITPMLSPLttnmyypFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSLTGA 84
Cdd:TIGR01770 251 AVFLRLFLYILFGFSEAWQIF-------LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAV 323

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1482033296  85 IVLMVAHGLTS----SMLFCLANTNYERTHS 111
Cdd:TIGR01770 324 LFYIFIYALMSlgafGVLSLLRSYKDEWIEY 354
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-99 2.59e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.41  E-value: 2.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   2 VLAAILLKLGGYGIIRITPMLSPlTTNMYYPFIILATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQWSL 81
Cdd:PRK12665  246 VFAGLLTKVGVYAIIRTHTLLFP-GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGL 324

                          90
                  ....*....|....*...
gi 1482033296  82 TGAIVLMVAHGLTSSMLF 99
Cdd:PRK12665  325 SGAIYYVAHHITVQTTLF 342
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-222 3.74e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 37.82  E-value: 3.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296   1 MVLAAILLKLGGYGIIRITPMLSplTTNMYYPFIIL-ATWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAASLIQTQw 79
Cdd:MTH00207  215 LVHSSTLVTAGVFLLIRFYPFLS--STYWFNPALLLtASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMP- 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1482033296  80 slTGAIVLMVAHGLTSSMLFCLANTN-YERTHSRTLLLARGLQLVLPLMTSWWLLANLMNMALPPTINI-TGELLIMTAT 157
Cdd:MTH00207  292 --KLALFHLITHALFKALLFVCAGSLiHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFySKDLILESSL 369

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1482033296 158 FNWSNPTII-MTGLGTLLTATYSLHMFLMTQRGKLtvhmtNTEPTHTREHLLMALhTIPMLLLMLK 222
Cdd:MTH00207  370 FYPHNSLMIlMIFLATALTAAYSTRFTLAVLWSPN-----SSSPYHHLEDEDKSL-TTPMLLLTLG 429
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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