NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|14794619|gb|AAK73417|]
View 

TraJ' [Cloning vector pCM110]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK13877 super family cl20126
conjugal transfer transcriptional regulator TraJ;
3-38 1.09e-16

conjugal transfer transcriptional regulator TraJ;


The actual alignment was detected with superfamily member PRK13877:

Pssm-ID: 184361 [Multi-domain]  Cd Length: 114  Bit Score: 66.19  E-value: 1.09e-16
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 14794619    3 DETKPTRKGSPPIKVYCLPDERRAIEEKAAAAGMSL 38
Cdd:PRK13877   1 DEKKPTRKRGRHLRVPVLPDEKAEIEANAAAAGLSV 36
 
Name Accession Description Interval E-value
PRK13877 PRK13877
conjugal transfer transcriptional regulator TraJ;
3-38 1.09e-16

conjugal transfer transcriptional regulator TraJ;


Pssm-ID: 184361 [Multi-domain]  Cd Length: 114  Bit Score: 66.19  E-value: 1.09e-16
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 14794619    3 DETKPTRKGSPPIKVYCLPDERRAIEEKAAAAGMSL 38
Cdd:PRK13877   1 DEKKPTRKRGRHLRVPVLPDEKAEIEANAAAAGLSV 36
MobA NF041264
plasmid mobilization protein MobA;
15-38 2.55e-04

plasmid mobilization protein MobA;


Pssm-ID: 469164  Cd Length: 91  Bit Score: 34.08  E-value: 2.55e-04
                        10        20
                ....*....|....*....|....
gi 14794619  15 IKVYCLPDERRAIEEKAAAAGMSL 38
Cdd:NF041264  7 PTIRCTPEEKEAIREKAADAGLSV 30
 
Name Accession Description Interval E-value
PRK13877 PRK13877
conjugal transfer transcriptional regulator TraJ;
3-38 1.09e-16

conjugal transfer transcriptional regulator TraJ;


Pssm-ID: 184361 [Multi-domain]  Cd Length: 114  Bit Score: 66.19  E-value: 1.09e-16
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 14794619    3 DETKPTRKGSPPIKVYCLPDERRAIEEKAAAAGMSL 38
Cdd:PRK13877   1 DEKKPTRKRGRHLRVPVLPDEKAEIEANAAAAGLSV 36
MobA NF041264
plasmid mobilization protein MobA;
15-38 2.55e-04

plasmid mobilization protein MobA;


Pssm-ID: 469164  Cd Length: 91  Bit Score: 34.08  E-value: 2.55e-04
                        10        20
                ....*....|....*....|....
gi 14794619  15 IKVYCLPDERRAIEEKAAAAGMSL 38
Cdd:NF041264  7 PTIRCTPEEKEAIREKAADAGLSV 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH