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Conserved domains on  [gi|147805782|emb|CAN69477|]
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hypothetical protein VITISV_017347 [Vitis vinifera]

Protein Classification

class I SAM-dependent methyltransferase( domain architecture ID 1904217)

class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor

CATH:  2.20.25.110
EC:  2.1.1.-
Gene Ontology:  GO:0008168|GO:1904047
PubMed:  12504684|12826405
SCOP:  3000118

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nnt1 super family cl43977
Protein N-terminal and lysine N-methylase, NNT1/EFM7 family [Posttranslational modification, ...
 72-141 5.73e-08

Protein N-terminal and lysine N-methylase, NNT1/EFM7 family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3897:

Pssm-ID: 443104 [Multi-domain]  Cd Length: 216  Bit Score: 52.58  E-value: 5.73e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147805782  72 WDSSIdlvnVLKHEIRDgQLSFRGKRVLELGCTYGLPGIFACLKGASTVHFQDLNAEAIRCTTIpNVLAN 141
Cdd:COG3897   53 WPSGQ----ALARYLLD-HPEVAGKRVLELGCGLGLVGIAAAKAGAADVTATDYDPEALAALRL-NAALN 116
 
Name Accession Description Interval E-value
Nnt1 COG3897
Protein N-terminal and lysine N-methylase, NNT1/EFM7 family [Posttranslational modification, ...
 72-141 5.73e-08

Protein N-terminal and lysine N-methylase, NNT1/EFM7 family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443104 [Multi-domain]  Cd Length: 216  Bit Score: 52.58  E-value: 5.73e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147805782  72 WDSSIdlvnVLKHEIRDgQLSFRGKRVLELGCTYGLPGIFACLKGASTVHFQDLNAEAIRCTTIpNVLAN 141
Cdd:COG3897   53 WPSGQ----ALARYLLD-HPEVAGKRVLELGCGLGLVGIAAAKAGAADVTATDYDPEALAALRL-NAALN 116
 
Name Accession Description Interval E-value
Nnt1 COG3897
Protein N-terminal and lysine N-methylase, NNT1/EFM7 family [Posttranslational modification, ...
 72-141 5.73e-08

Protein N-terminal and lysine N-methylase, NNT1/EFM7 family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443104 [Multi-domain]  Cd Length: 216  Bit Score: 52.58  E-value: 5.73e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147805782  72 WDSSIdlvnVLKHEIRDgQLSFRGKRVLELGCTYGLPGIFACLKGASTVHFQDLNAEAIRCTTIpNVLAN 141
Cdd:COG3897   53 WPSGQ----ALARYLLD-HPEVAGKRVLELGCGLGLVGIAAAKAGAADVTATDYDPEALAALRL-NAALN 116
COG2263 COG2263
Predicted RNA methylase [General function prediction only];
95-130 1.32e-03

Predicted RNA methylase [General function prediction only];


Pssm-ID: 441864 [Multi-domain]  Cd Length: 199  Bit Score: 39.12  E-value: 1.32e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 147805782  95 GKRVLELGCTYGLPGIFACLKGASTVHFQDLNAEAI 130
Cdd:COG2263   46 GKTVLDLGCGTGMLAIGAALLGAKKVVGVDIDPEAL 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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