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Conserved domains on  [gi|1475686142|gb|AXY63947|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Ornebius fuscicerci]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-174 2.09e-31

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 110.67  E-value: 2.09e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142   3 IKMTLYLMFIMNQLFMFSNHPLSSTIMIIFQTLFMCFMIGELFLNFWYSYILFLIFLGGMLVIFIYMTSLTPNIMFSSQK 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142  83 INIIYIGIMFLFMFFLIIMliqinfnfivlaDNSMMNNMNFHNYQETSNTLINLFSESNFKMTWFLMLYLLITLIMVTKI 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIK------------NSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKI 148

                         170
                  ....*....|..
gi 1475686142 163 SNISKGPLRQMN 174
Cdd:MTH00166  149 TNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-174 2.09e-31

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 110.67  E-value: 2.09e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142   3 IKMTLYLMFIMNQLFMFSNHPLSSTIMIIFQTLFMCFMIGELFLNFWYSYILFLIFLGGMLVIFIYMTSLTPNIMFSSQK 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142  83 INIIYIGIMFLFMFFLIIMliqinfnfivlaDNSMMNNMNFHNYQETSNTLINLFSESNFKMTWFLMLYLLITLIMVTKI 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIK------------NSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKI 148

                         170
                  ....*....|..
gi 1475686142 163 SNISKGPLRQMN 174
Cdd:MTH00166  149 TNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-174 2.09e-31

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 110.67  E-value: 2.09e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142   3 IKMTLYLMFIMNQLFMFSNHPLSSTIMIIFQTLFMCFMIGELFLNFWYSYILFLIFLGGMLVIFIYMTSLTPNIMFSSQK 82
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142  83 INIIYIGIMFLFMFFLIIMliqinfnfivlaDNSMMNNMNFHNYQETSNTLINLFSESNFKMTWFLMLYLLITLIMVTKI 162
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIK------------NSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKI 148

                         170
                  ....*....|..
gi 1475686142 163 SNISKGPLRQMN 174
Cdd:MTH00166  149 TNIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-172 5.85e-17

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 73.50  E-value: 5.85e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142   1 MMIKMTLYLMFIMNQLFMFSNHPLSSTIMIIFQTLFMCFMIGeLFLNFWYSYILFLIFLGGMLVIFIYMTSLTPNIMFSS 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIIT-MESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142  81 QKiniiyigimFLFMFFLIIMLIQINFNFIVLADNSMMNNMNFHNyqetSNTLINLFSESNFKMTWFLMLYLLITLIMVT 160
Cdd:MTH00212   80 KK---------YFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKL----ELNVSKILSNNNIPILLFLGLILLIALLMVV 146

                         170
                  ....*....|..
gi 1475686142 161 KISNISKGPLRQ 172
Cdd:MTH00212  147 KICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-171 4.13e-12

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 60.67  E-value: 4.13e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142   1 MMIKMTLYLMFIMNQLFMFSNHPLSSTIMIIFQTLFMCFMIGeLFLNFWYSYILFLIFLGGMLVIFIYMTSLTPNIMFSS 80
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142  81 QKINIIYIGIMFLFMFFLIimliqinFNFIVLADNSMMNNMNFHNYQETSNTLINLFSESNFKMTWFLMLYLLITLIMVT 160
Cdd:MTH00152   80 NFKFVFFSLTLFGFLGLFF-------FFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVV 152

                         170
                  ....*....|.
gi 1475686142 161 KISNISKGPLR 171
Cdd:MTH00152  153 KICYYEEGSLR 163
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 51-72 5.96e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 38.58  E-value: 5.96e-04
                          10        20
                  ....*....|....*....|..
gi 1475686142  51 SYILFLIFLGGMLVIFIYMTSL 72
Cdd:MTH00138   52 SLVLFLIYLGGMLVVFAYSAAL 73
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 38-73 2.81e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 36.75  E-value: 2.81e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1475686142  38 CFMIGELFLNFwYSYILFLIFLGGMLVIFIYMTSLT 73
Cdd:MTH00065   40 CLVLVELGVSF-LSLVLFLIYLGGMLVVFAYSAALA 74
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-112 3.50e-03

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 36.42  E-value: 3.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475686142   1 MMIKMTLYLMFIMNQLFMFSNHPLSSTIMIIFQTLFMCFMIGELFLNFwYSYILFLIFLGGMLVIFIYMTSLTPNIMFSS 80
Cdd:MTH00045    1 MVFYLFLILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSF-LALLLLLIYMGGMLVVFVYSSALSAERYPSV 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1475686142  81 QKINIIYigIMFLFMFFLIIMLIQINFNFIVL 112
Cdd:MTH00045   80 SNLGEVL--VLSLLLSLWVFISFDNFLELSNN 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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