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Conserved domains on  [gi|1475476792|ref|WP_118828837|]
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tol-pal system YbgF family protein [Salinibacter ruber]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11448200)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes; similar to Schizosaccharomyces pombe mitochondrial pentatricopeptide repeat-containing protein 4

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 119-228 3.66e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 58.46  E-value: 3.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792 119 ALYQRDEYDRALTYYQRFEKE--KDFIGASAYAAQAAIQETRGSFERAGGLYEQAASQYQNKLTAPRYLLNAGQAYEEAG 196
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1475476792 197 QYEAAIGVYERIQEEYPDSEQASNAERYLARA 228
Cdd:COG1729    82 DYDKARATLEELIKKYPDSEAAKEARARLARL 113
 
Name Accession Description Interval E-value
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 119-228 3.66e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 58.46  E-value: 3.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792 119 ALYQRDEYDRALTYYQRFEKE--KDFIGASAYAAQAAIQETRGSFERAGGLYEQAASQYQNKLTAPRYLLNAGQAYEEAG 196
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1475476792 197 QYEAAIGVYERIQEEYPDSEQASNAERYLARA 228
Cdd:COG1729    82 DYDKARATLEELIKKYPDSEAAKEARARLARL 113
TPR_6 pfam13174
Tetratricopeptide repeat;
185-215 1.31e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 35.52  E-value: 1.31e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1475476792 185 LLNAGQAYEEAGQYEAAIGVYERIQEEYPDS 215
Cdd:pfam13174   3 LLKLALAYLELGDTDEAKEALERLIKKYPDS 33
 
Name Accession Description Interval E-value
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 119-228 3.66e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 58.46  E-value: 3.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792 119 ALYQRDEYDRALTYYQRFEKE--KDFIGASAYAAQAAIQETRGSFERAGGLYEQAASQYQNKLTAPRYLLNAGQAYEEAG 196
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1475476792 197 QYEAAIGVYERIQEEYPDSEQASNAERYLARA 228
Cdd:COG1729    82 DYDKARATLEELIKKYPDSEAAKEARARLARL 113
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 14-228 3.26e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.30  E-value: 3.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792  14 QELRQNIFVDLYARALLFYDEYKQLAQGLGVALLVLILAIPGYIYYHQQQEQAANQQLGQILPVYEQGNFQQALDgtgDR 93
Cdd:COG3914    25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALA---LY 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792  94 AGLLAIADDYGgtdagnLATFYAANALYQRDEYDRALTYYQRF-EKEKDFIgaSAYAAQAAIQETRGSFERAGGLYEQAA 172
Cdd:COG3914   102 RRALALNPDNA------EALFNLGNLLLALGRLEEALAALRRAlALNPDFA--EAYLNLGEALRRLGRLEEAIAALRRAL 173

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1475476792 173 SQYQNKLTApryLLNAGQAYEEAGQYEAAIGVYERIQEEYPDSEQA-SNAERYLARA 228
Cdd:COG3914   174 ELDPDNAEA---LNNLGNALQDLGRLEEAIAAYRRALELDPDNADAhSNLLFALRQA 227
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 158-233 4.76e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 4.76e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1475476792 158 RGSFERAGGLYEQAASQYQNKLTAPRYLLNAGQAYEEAGQYEAAIGVYERIQEEYPDSEQASNAERYLARAKVHQG 233
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 112-233 1.04e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792 112 ATFYAANALYQRDEYDRALTYYQRfEKEKDFIGASAYAAQAAIQETRGSFERAGGLYEQAASQYQNKLTApryLLNAGQA 191
Cdd:COG2956    44 AHLALGNLYRRRGEYDRAIRIHQK-LLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEA---LRLLAEI 119

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1475476792 192 YEEAGQYEAAIGVYERIQEEYPDSEQASNaerYLARAKVHQG 233
Cdd:COG2956   120 YEQEGDWEKAIEVLERLLKLGPENAHAYC---ELAELYLEQG 158
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 112-218 4.93e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 4.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792 112 ATFYAANALYQRDEYDRALTYYQRFEKEKDfIGASAYAAQAAIQETRGSFERAGGLYEQAASQYQNkltAPRYLLNAGQA 191
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGP-ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD---CARALLLLAEL 187

                          90       100
                  ....*....|....*....|....*..
gi 1475476792 192 YEEAGQYEAAIGVYERIQEEYPDSEQA 218
Cdd:COG2956   188 YLEQGDYEEAIAALERALEQDPDYLPA 214
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 114-218 6.74e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 6.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792 114 FYAANALYQRDEYDRALTYYQRFEKEkdfigasaYAAQAAIQETRGSFERAGGLYEQAASQYQNKL----TAPRYLLNAG 189
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLerdpDRAEALLELA 83

                          90       100
                  ....*....|....*....|....*....
gi 1475476792 190 QAYEEAGQYEAAIGVYERIQEEYPDSEQA 218
Cdd:COG2956    84 QDYLKAGLLDRAEELLEKLLELDPDDAEA 112
TPR_6 pfam13174
Tetratricopeptide repeat;
185-215 1.31e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 35.52  E-value: 1.31e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1475476792 185 LLNAGQAYEEAGQYEAAIGVYERIQEEYPDS 215
Cdd:pfam13174   3 LLKLALAYLELGDTDEAKEALERLIKKYPDS 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 112-229 1.35e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 1.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792 112 ATFYAANALYQRDEYDRALTYYQR-FEKEKDFIGASAYAAQaaIQETRGSFERAGGLYEQAASQYQNKLTApryLLNAGQ 190
Cdd:COG2956   146 AYCELAELYLEQGDYDEAIEALEKaLKLDPDCARALLLLAE--LYLEQGDYEEAIAALERALEQDPDYLPA---LPRLAE 220

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1475476792 191 AYEEAGQYEAAIGVYERIQEEYPDSEQASNAERYLARAK 229
Cdd:COG2956   221 LYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKE 259
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 117-228 2.88e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.91  E-value: 2.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792 117 ANALYQRDEYDRALTYYQR-FEKEKDFIGASAYAAQAAIQetRGSFERAGGLYEQAASQYQNkltAPRYLLNAGQAYEEA 195
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKaLRLDPDNADALLDLAEALLA--AGDTEEAEELLERALALDPD---NPEALYLLGLAAFQQ 98

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1475476792 196 GQYEAAIGVYERIQEEYPDSEQASNAERYLARA 228
Cdd:COG4235    99 GDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 31-220 4.99e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 37.14  E-value: 4.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792  31 FYDEYKQLAQGLGVALLVLILAIPGYIYYHQQQEQAANQQLGQILPVYEQGNFQQALDGTGDragllaIADDYGGTDAGN 110
Cdd:COG2976    17 WWKENGKAIIVGVVLGLAAVFGWRYWQSYQESQAEEASALYEQLLEALAAGDAAAAAAAAEK------LIDDYGGTAYAA 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1475476792 111 LATFYAANALYQRDEYDRALTYYQRFEKEK--DFIGASAYAAQAAIQETRGSFERAGGLYEQAASQYqnklTAPRYLLNA 188
Cdd:COG2976    91 LAALLLAKAAVDAGDLDKAAAQLQWVLDNAkdPALKALARLRLARVLLAQKKYDEALATLDAVKPEA----FAALYAELR 166

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1475476792 189 GQAYEEAGQYEAAIGVYERIQEEYPDSEQASN 220
Cdd:COG2976   167 GDILLAQGDKAEARAAYQKALAALPEDAPLRQ 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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