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Conserved domains on  [gi|1471148037|gb|AXU39931|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Lerista allanae]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-228 4.96e-133

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 381.85  E-value: 4.96e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00124  230 VLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSL 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00124  310 SGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 228
Cdd:MTH00124  390 PTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-228 4.96e-133

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 381.85  E-value: 4.96e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00124  230 VLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSL 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00124  310 SGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 228
Cdd:MTH00124  390 PTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-229 5.62e-45

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 156.39  E-value: 5.62e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:COG1008   246 LLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:COG1008   326 LQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQV 405

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037 160 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 229
Cdd:COG1008   406 NPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-171 5.37e-39

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 136.29  E-value: 5.37e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   2 LAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLT 81
Cdd:pfam00361 120 LAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQ 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  82 GAIVLMVAHGLTSSMLFCLA-NTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:pfam00361 200 AAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279

                         170
                  ....*....|.
gi 1471148037 161 NLTITMTGLGT 171
Cdd:pfam00361 280 WIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-229 7.14e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 140.07  E-value: 7.14e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:TIGR01972 240 ILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELG 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:TIGR01972 320 ISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKV 399

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1471148037 160 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLP-THITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 229
Cdd:TIGR01972 400 NPVVAFLAALGIVLAAAYMLTLYKRVFFGELSnPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-228 4.96e-133

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 381.85  E-value: 4.96e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00124  230 VLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSL 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00124  310 SGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 228
Cdd:MTH00124  390 PTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-229 1.72e-125

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 363.08  E-value: 1.72e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00068  230 ILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSF 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00068  310 SGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 229
Cdd:MTH00068  390 NWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-228 1.62e-119

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 347.65  E-value: 1.62e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00110  230 VLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSF 309

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00110  310 MGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWS 389

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 228
Cdd:MTH00110  390 NITIILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGP 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-227 1.31e-98

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 294.56  E-value: 1.31e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00127  231 VLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGF 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00127  311 TGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWS 390

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMG 227
Cdd:MTH00127  391 PWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-225 6.10e-92

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 277.21  E-value: 6.10e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00206  226 VLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGF 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00206  306 KGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWS 385

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLI 225
Cdd:MTH00206  386 NFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-226 1.41e-76

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 237.95  E-value: 1.41e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLN-PLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:MTH00044  231 ILAAILLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWG 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:MTH00044  311 INGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISW 390

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1471148037 160 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIM 226
Cdd:MTH00044  391 SILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-226 7.73e-68

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 215.02  E-value: 7.73e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00163  218 ILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGL 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00163  298 MGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWS 377

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIM 226
Cdd:MTH00163  378 KLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-227 1.22e-64

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 206.23  E-value: 1.22e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00150  189 ILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGW 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00150  269 VGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYS 348

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMG 227
Cdd:MTH00150  349 PWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFM 415
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-226 1.49e-57

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 188.65  E-value: 1.49e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00205  222 ILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGM 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00205  302 NGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSS 381

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIM 226
Cdd:MTH00205  382 KISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-225 1.10e-55

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 183.79  E-value: 1.10e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00014  224 ILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGW 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00014  304 QGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSS 383

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1471148037 161 NLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLI 225
Cdd:MTH00014  384 LSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-229 5.62e-45

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 156.39  E-value: 5.62e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:COG1008   246 LLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:COG1008   326 LQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQV 405

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037 160 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 229
Cdd:COG1008   406 NPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-171 5.37e-39

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 136.29  E-value: 5.37e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   2 LAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLT 81
Cdd:pfam00361 120 LAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQ 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  82 GAIVLMVAHGLTSSMLFCLA-NTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:pfam00361 200 AAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279

                         170
                  ....*....|.
gi 1471148037 161 NLTITMTGLGT 171
Cdd:pfam00361 280 WIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-229 7.14e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 140.07  E-value: 7.14e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:TIGR01972 240 ILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELG 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:TIGR01972 320 ISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKV 399

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1471148037 160 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLP-THITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPF 229
Cdd:TIGR01972 400 NPVVAFLAALGIVLAAAYMLTLYKRVFFGELSnPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDLT 470
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-230 4.54e-38

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 138.03  E-value: 4.54e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:PRK05846  248 LLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIItLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLG 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:PRK05846  328 IQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQV 407

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1471148037 160 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGPFS 230
Cdd:PRK05846  408 NPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPKPLLDVIH 478
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-228 1.67e-37

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 136.35  E-value: 1.67e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFI-MLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:MTH00204  246 ILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIvMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:MTH00204  326 LVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEY 405

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148037 160 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMGP 228
Cdd:MTH00204  406 SLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFIIIDL 474
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-182 9.18e-37

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 134.41  E-value: 9.18e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:MTH00217  243 ILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQG 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:MTH00217  323 LVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEY 402

                         170       180
                  ....*....|....*....|...
gi 1471148037 160 SNLTITMTGLGTLLTATYSLYMF 182
Cdd:MTH00217  403 SYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-226 2.16e-34

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 128.12  E-value: 2.16e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRIT-PMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:MTH00226  267 LLAGILLKLGGYGLVRLSwPILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIG 346

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:MTH00226  347 LTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNW 426

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1471148037 160 SNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIM 226
Cdd:MTH00226  427 NPIIGVFVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRREFYITASMVFFAFLIGIYPIFIL 493
ndhD CHL00011
NADH dehydrogenase subunit 4
 2-181 1.99e-21

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 91.93  E-value: 1.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   2 LAAILLKLGGYGIIRITPMLNPLTTNMYYPFIML-AMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:CHL00011  249 LAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIvGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGL 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERThsRTLLLAR--GLQLILPLMTTWWLMANLMNMALPPTINITGELL----IMA 154
Cdd:CHL00011  329 NGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgIIT 406

                         170       180       190
                  ....*....|....*....|....*....|
gi 1471148037 155 STFNWSNLTITMT---GLGTLLTATYSLYM 181
Cdd:CHL00011  407 SQKYLLMPKILITfvmAIGMILTPIYLLSM 436
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
1-223 4.96e-21

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 90.91  E-value: 4.96e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFimLAMWGIIMT---STICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQ 77
Cdd:PRK06473  242 LLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATP 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  78 WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGL---QLILPLMTTWWLMANLMNMALPPTINITGELLIMA 154
Cdd:PRK06473  320 LSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFR 399

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148037 155 STFNWSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQ 223
Cdd:PRK06473  400 GSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVLWSERLPALVLAVLIVVLGIQPS 468
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-186 6.81e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 90.21  E-value: 6.81e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRI-TPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 78
Cdd:COG0651   242 LLSGLLTKVGVYAILRVlTLLFGADPALFLGTLLLvLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  79 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFN 158
Cdd:COG0651   322 GLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALE 401

                         170       180
                  ....*....|....*....|....*....
gi 1471148037 159 WSNLTITMTGL-GTLLTATYSLYMFLMTQ 186
Cdd:COG0651   402 AGAWLLAAVLLlSSLLTLAYFVRIFGRAQ 430
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-226 9.93e-21

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 90.09  E-value: 9.93e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYP-FIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWS 79
Cdd:PRK12561  222 ILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLG 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHsrTLLLAR--GLQLILPLMTTWWLMANLMNMALPPTINITGELLIM---- 153
Cdd:PRK12561  302 ISGAMLQMISHGLIAAALFFLTGVTYERTH--TLSIPNmgGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFlgit 379

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037 154 -----ASTFNwsNLTITMTGLGTLLTATYSLYM----FLMTQRGKLPTHITQTEpTHTREHLLMALHTMPMLLLMLKPQL 224
Cdd:PRK12561  380 ssdvySSTFR--TITILLAAVGLILTPIYLLSMlrrvFYGPRSELLPALAVVED-AKPRELFIALSLLVPIIGIGFYPKL 456


                  ..
gi 1471148037 225 IM 226
Cdd:PRK12561  457 AT 458
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-180 9.09e-20

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 86.50  E-value: 9.09e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRItpmLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:MTH00094  188 LLAGLLLKLGTAGFLRI---LGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGK 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:MTH00094  265 LSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKN 344

                         170       180
                  ....*....|....*....|
gi 1471148037 161 NLTITMTGLGTLLTATYSLY 180
Cdd:MTH00094  345 KFSFFFIFFYFLVSFYYSLF 364
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 2-181 4.31e-19

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 85.14  E-value: 4.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   2 LAAILLKLGGYGIIRITPMLNPLTTNMYYP-FIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:PRK02546  251 LAGILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGT 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIM------- 153
Cdd:PRK02546  331 SGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFvgfatsd 410

                         170       180
                  ....*....|....*....|....*...
gi 1471148037 154 ASTFNWSNLTITMTGLGTLLTATYSLYM 181
Cdd:PRK02546  411 AYTLPFRVVVVFLAAVGVILTPIYLLSM 438
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-177 1.40e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 72.22  E-value: 1.40e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRIT----PMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQT 76
Cdd:PRK08375  239 LLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLT 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  77 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGEL-LIMAS 155
Cdd:PRK08375  319 PLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWyLVVGA 398

                         170       180
                  ....*....|....*....|..
gi 1471148037 156 TFNWSNLTITMTGLGTLLTATY 177
Cdd:PRK08375  399 VEAGQWLVLAVLLASSLLALLY 420
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-193 1.62e-14

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 72.05  E-value: 1.62e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPfiMLAMWG---IIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQ 77
Cdd:PRK07363  242 LLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGtisVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQ 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  78 WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLI---LPLMTTWWLMANLMNMALPPTINITGELLIMA 154
Cdd:PRK07363  320 LSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1471148037 155 STFNWSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTH 193
Cdd:PRK07363  400 GSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRLDNK 438
PRK12650 PRK12650
DUF4040 family protein;
3-179 6.85e-13

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 67.38  E-value: 6.85e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   3 AAILLKLGGYGIIRITPMLNPLTTnMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTG 82
Cdd:PRK12650  247 AAAVVKAGIYLLLRFSPVFHDVAV-WNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  83 AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTIN-ITGELLIMA------S 155
Cdd:PRK12650  326 AVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGfVSKEGMLTAfleapgG 405

                         170       180
                  ....*....|....*....|....
gi 1471148037 156 TFNWSNLTITMtGLGTLLTATYSL 179
Cdd:PRK12650  406 NAGVVLLLVGA-ALGAVFTFAYSA 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-152 1.37e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 66.15  E-value: 1.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRI-------TPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACL 73
Cdd:PRK12667  260 MLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIG 339

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1471148037  74 IQTQWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLI 152
Cdd:PRK12667  340 IGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLL 418
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 3-220 1.23e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 60.55  E-value: 1.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   3 AAILLKLGGYGIIRITPMLnplttnMYYPFIMLAMWGI-----IMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQtq 77
Cdd:COG1009   250 AATMVKAGVYLLARLSPLF------ALSPVWLTVVAIIgaitaLFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG-- 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  78 wSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTF 157
Cdd:COG1009   322 -AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAL 400

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1471148037 158 NWSNLTITMTGLGTL---LTATYSLYMFLMTQRGKLPTHitqtEPTHTRE-HLLMalhTMPMLLLML 220
Cdd:COG1009   401 EAGGLGPLLLAVALLgafLTAFYSFRLFFLVFFGKPRPK----TPKHPHEsPWLM---TLPLVVLAV 460
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-227 1.43e-10

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 60.33  E-value: 1.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAM--WGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 78
Cdd:PRK06458  251 LLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIFglLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPL 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  79 SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLmTTWWLMANLMNMA-LPPTINITGELLIMASTF 157
Cdd:PRK06458  331 GIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPL-TGWGLMLGALAIAgMPPFGVFISEFLILTAGL 409

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037 158 NWSNLTITMTGLGTLLTATYSLymFLMTQRgklptHITQTEPTHTREHLLMALHTMPMLLLMLKPqLIMG 227
Cdd:PRK06458  410 ARGPLLIAILLLLLLTLAFAAL--VRRVAG-----MVFGEPPEAVNRGDLGWLTTSPMFVHLVLV-LVLG 471
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-172 9.29e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 54.93  E-value: 9.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   4 AILLKLGGYGIIRitpmLNPLTTNMYYPFIMLAMWG---IIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:PRK12647  235 ATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAI 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:PRK12647  311 KAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAP 390

                         170
                  ....*....|..
gi 1471148037 161 NLTITMTGLGTL 172
Cdd:PRK12647  391 LWSLILTVAAVL 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-184 5.10e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 52.51  E-value: 5.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   3 AAILLKLGGYGIIRITPMLNPLTT-----NMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQ 77
Cdd:PRK06589  249 AVIVVKTGLFCIYKILLYIFGLSYlqrifAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTP 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  78 WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTF 157
Cdd:PRK06589  329 KALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAAS 408

                         170       180
                  ....*....|....*....|....*....
gi 1471148037 158 NWSN--LTITMTGLGTLLTATYSLYMFLM 184
Cdd:PRK06589  409 EQNQpwLSIIVMLVVIASSILSALYLLKI 437
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-98 9.33e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.06  E-value: 9.33e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPML--NPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQW 78
Cdd:PRK08676  243 LLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPL 322

                          90       100
                  ....*....|....*....|
gi 1471148037  79 SLTGAIVLMVAHGLTSSMLF 98
Cdd:PRK08676  323 ALFWMLFHMLAHSLVKSGLF 342
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 3-98 1.59e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 51.31  E-value: 1.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   3 AAILLKLGGYGIIRITPMLNPLT--TNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSL 80
Cdd:PRK08377  245 SAFVVKAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGV 324

                          90
                  ....*....|....*...
gi 1471148037  81 TGAIVLMVAHGLTSSMLF 98
Cdd:PRK08377  325 DAGVFHMINHAIVKALLF 342
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-156 8.50e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.96  E-value: 8.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  32 FIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGAIVLMVAHGLTSSMLFCLANT---NYERT 108
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTT 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1471148037 109 HSRTLLlarGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMAST 156
Cdd:PRK12662  362 KLEDCL---NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAF 406
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-180 3.86e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.23  E-value: 3.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   3 AAILLKLGGYGIIRITPMLNPLTTnMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTG 82
Cdd:PRK12644  242 AAAMVKAGIYLVARLAPGFADVPV-WRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALA 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  83 AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMAnLMNMA-LPPTINITG-----ELLIMAST 156
Cdd:PRK12644  321 GLAMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAVVAALA-AASMAgLPPLLGFVAkeaalEAVLHDGA 399

                         170       180
                  ....*....|....*....|....*
gi 1471148037 157 FNW-SNLTITMTGLGTLLTATYSLY 180
Cdd:PRK12644  400 LGPaGPVVLAGIVLGSILTVAYSLR 424
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-179 6.50e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 46.48  E-value: 6.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   3 AAILLKLGGYGIIRITPMLNPLTTNMYYPFIM-LAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLT 81
Cdd:PRK07691  248 GALLTKVGVYAIARTFTLFFSHDTSFTHYLILiLALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMI 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  82 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWSN 161
Cdd:PRK07691  328 GAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGF 407

                         170
                  ....*....|....*...
gi 1471148037 162 LTITMTGLGTLLTATYSL 179
Cdd:PRK07691  408 YVSGIIVLLSSLLVLYSV 425
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-183 8.93e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.71  E-value: 8.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNplttNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIqtqwsl 80
Cdd:PRK07234  221 LLSGVVVKAGVFPLVRCALDVP----GLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV------ 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 tgAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLmttwwLMANLMNMALPPTINITGELLIMASTFNWS 160
Cdd:PRK07234  291 --GGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPL-----TMASFSIAGFPLLAGFVSKVLTLKNLLPWQ 363

                         170       180
                  ....*....|....*....|...
gi 1471148037 161 NLTITMTGLGTllTATYSLYMFL 183
Cdd:PRK07234  364 AIALNLAAVGT--AASFWKFIFL 384
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-157 1.49e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 45.49  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRItpMLNPLTTNMYYPFIML------AMWGIIMTsticLRQTDLKSLIAYSSVSHMGL------- 67
Cdd:PRK08667  242 LMSGVMLKVAVYGLVRF--LMDVLSPELWWGVLILlagsisALLGVIYA----LKEHDLKGLLAYSSIENIGIilmgigl 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  68 -VIAACLIQTQW---SLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPT 143
Cdd:PRK08667  316 yVIFGVYGLDTLallALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPF 395

                         170
                  ....*....|....
gi 1471148037 144 INITGELLIMASTF 157
Cdd:PRK08667  396 NGFASELLLYESFF 409
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-94 2.16e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 44.81  E-value: 2.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   8 KLGGYGII-RITPM-LNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGAIV 85
Cdd:PRK05777  247 KIAAFAVLlRLLVVaFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLF 326


                  ....*....
gi 1471148037  86 LMVAHGLTS 94
Cdd:PRK05777  327 YLLAYLFMT 335
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 48-227 2.49e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 44.72  E-value: 2.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  48 LRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGAIVLMVAHGLTSSMLF-CLANTNYERTHSRTLLLARGLQLILPLM 126
Cdd:COG1007   288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEDLAGLARRSPLL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037 127 TtwWLMANLM-NMA-LPPTINITGELLIMASTFNWSNLTITMTG-LGTLLTATYSL----YMFLMTQRGKLPTHItqteP 199
Cdd:COG1007   368 A--LAMTIFLlSLAgIPPTAGFFGKFYVFSAAVEAGLYWLAVIAvLNSVISAYYYLrvvkAMYFDEPEEEAPISA----P 441

                         170       180
                  ....*....|....*....|....*...
gi 1471148037 200 THTRehLLMALHTMPMLLLMLKPQLIMG 227
Cdd:COG1007   442 PGLR--VALVIAALLVLLLGIFPGPLLD 467
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-98 2.89e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.60  E-value: 2.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYG------IIRITPMLNPLTTNM-----YYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVI 69
Cdd:PRK08668  233 VLSGQLSKLGAYGfllvlyVLPGTKLFSEFGTYRgvplfNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYIL 312

                          90       100
                  ....*....|....*....|....*....
gi 1471148037  70 AACLIQTQWSLTGAIVLMVAHGLTSSMLF 98
Cdd:PRK08668  313 VGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 3-173 3.50e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 44.19  E-value: 3.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   3 AAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMG---LVIAACLIQTQWS 79
Cdd:PRK06525  246 AASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGymfFGLSLAILGSRLA 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 LTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:PRK06525  326 LEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFEL 405

                         170
                  ....*....|....
gi 1471148037 160 SNLTITMTGLGTLL 173
Cdd:PRK06525  406 SVEYWILLPAMVLL 419
PRK12646 PRK12646
DUF4040 family protein;
3-219 4.01e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 43.98  E-value: 4.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   3 AAILLKLGGYGIIRITPMLNpLTTNMYYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLV-----IAACLIQTQ 77
Cdd:PRK12646  249 SATMVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMImamvgIGGGYAQHQ 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  78 ---------WSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMAnLMNMALPPTIN--I 146
Cdd:PRK12646  328 qdaiasiyvFVLFAALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIA-ALSMAGVPFLNgfL 406

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037 147 TGELLI--MASTFNWSN----LTITMTGLG---TLLTATYSLYMFLMTQRGKLPTHITQTEPTHtrEHLLMALHTMPMLL 217
Cdd:PRK12646  407 SKEMFLdaLTQTGQLSQfsliSMIIIVFIGviaSIFTFTYALYMVKEVFWGKYDSKVFTKKNIH--EPWLFSLPSLILMV 484


                  ..
gi 1471148037 218 LM 219
Cdd:PRK12646  485 LV 486
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-174 1.53e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 42.39  E-value: 1.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  10 GGYGIIRI-----TPMLNPLTTNmyYPFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQT-------- 76
Cdd:PRK08376  265 GLYALARVlfsiyGPAINLATVG--WVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLaalgdpam 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  77 ----QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLI 152
Cdd:PRK08376  343 asygEIALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422

                         170       180
                  ....*....|....*....|..
gi 1471148037 153 MASTFNWSNLTITMTGLGTLLT 174
Cdd:PRK08376  423 YESSALFNPILGVIAMIGSVLT 444
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
3-227 3.39e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.09  E-value: 3.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   3 AAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSTI-CLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLT 81
Cdd:PRK12663  245 AALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGALgALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIN 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  82 GAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNWSN 161
Cdd:PRK12663  325 GAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGA 404

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1471148037 162 LTITMTGLGTLLTATYSLY-MFLMTQRGKLPTHITQTEPTHTREHLLMALHTMPMLLLMLKPQLIMG 227
Cdd:PRK12663  405 YILLALMLITSLITMYSLFrIFFLAYWGDKDGEEVNFKPIPLYRKLPLSILAVVVIAMGIAAEPLLN 471
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 1-164 3.40e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 41.06  E-value: 3.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTNMYYPFIMLAMWGIIMTSticLRQTDLKSLIAYSSVSHMgLVIAACLIQTQWSL 80
Cdd:MTH00062  202 FLSGYIMKLGLLGVYRFCGFIFSGSFLGYLFLCCLFSVFFLITA---CSELDGKRWLAFLSLSHI-LVPVLGLFVGDWSS 277

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  81 TG-AIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMASTFNW 159
Cdd:MTH00062  278 INlSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGV 357


                  ....*
gi 1471148037 160 SNLTI 164
Cdd:MTH00062  358 LVYLL 362
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-180 3.66e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 41.11  E-value: 3.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNPLTTnmyypFIMLAMWGIIMTSTI----CLRQTDLKSLIAYSSVSHMGLVIAACLIQT 76
Cdd:PRK12665  246 VFAGLLTKVGVYAIIRTHTLLFPGGG-----LDTLLMVVALLTMVVgilgAIAQSDIKRLLSFTLVSHIGYMVFGIALST 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  77 QWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRTLLLARGLQLILPLMTTWWLMAnLMNMA-LPPTINITGEL-LIMA 154
Cdd:PRK12665  321 VAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFVP-ALNLGgIPPFSGFIGKVaLLEA 399

                         170       180
                  ....*....|....*....|....*.
gi 1471148037 155 STFNWSNLTITMTGlGTLLTATYSLY 180
Cdd:PRK12665  400 GAEDGTWLAWALVA-GGVVTSLLTLY 424
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
33-181 7.93e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.01  E-value: 7.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  33 IMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGAIVLMVAHGLTSSMLFCLANTNYERTHSRT 112
Cdd:PRK06277  270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1471148037 113 LLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIM--ASTFNWSNLTITM--TGLGTLLT---ATYSLYM 181
Cdd:PRK06277  350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAqaAMQANMPELAIIMiiVSIGTFVSmmkAFYLIYL 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-226 1.20e-03

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 39.55  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   4 AILLKLGGYGIIRITPMLNPLttnmyypFIMLAMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQWSLTGA 83
Cdd:TIGR01770 251 AVFLRLFLYILFGFSEAWQIF-------LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAV 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  84 IVLMVAHGLTSSMLF-CLANT-NYERTHSRTLLLARGLQLILPLMTTwwLMA-NLMNMA-LPPTINITGELLIMASTFN- 158
Cdd:TIGR01770 324 LFYIFIYALMSLGAFgVLSLLrSYKDEWIEYISDFAGLFKTNPILAI--LILiFMFSLAgIPPLAGFFGKFYVFFALLKs 401

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1471148037 159 ----WSNLTITMTGLGTLLTATYSLYMFLMTQRGKLPTHitqtePTHTREHLLMALHTMPMLLLMLKPQLIM 226
Cdd:TIGR01770 402 glywLAVIAVLTSVIGAFYYLRVVKVMYFDKPERRIPSN-----PQSKAQSLLLSISALFILFLGLFPSLIL 468
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-221 9.38e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 36.67  E-value: 9.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037   1 VLAAILLKLGGYGIIRITPMLNplTTNMYYPFIML-AMWGIIMTSTICLRQTDLKSLIAYSSVSHMGLVIAACLIQTQws 79
Cdd:MTH00207  216 VHSSTLVTAGVFLLIRFYPFLS--STYWFNPALLLtASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMP-- 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1471148037  80 lTGAIVLMVAHGLTSSMLFCLANTN-YERTHSRTLLLARGLQLILPLMTTWWLMANLMNMALPPTINITGELLIMAST-- 156
Cdd:MTH00207  292 -KLALFHLITHALFKALLFVCAGSLiHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSlf 370

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1471148037 157 FNWSNLTITMTGLGTLLTATYSLYMFLMTQRGKLpthitQTEPTHTREHLLMALhTMPMLLLMLK 221
Cdd:MTH00207  371 YPHNSLMILMIFLATALTAAYSTRFTLAVLWSPN-----SSSPYHHLEDEDKSL-TTPMLLLTLG 429
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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