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Conserved domains on  [gi|1464311287|ref|YP_009508891|]
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Bel-2 protein [Simian foamy virus Pongo pygmaeus pygmaeus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Foamy_BEL super family cl20250
Foamy virus BEL 1/2 protein;
6-110 1.78e-15

Foamy virus BEL 1/2 protein;


The actual alignment was detected with superfamily member pfam03274:

Pssm-ID: 281291  Cd Length: 301  Bit Score: 75.52  E-value: 1.78e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464311287   6 QPWQFQCLVDKYGKKCIMTYFWMPPLGQVTIRLYNNLTVITICQGL--DPFVNLNDCGSNLDESDCSEPDVFCCGPLCYK 83
Cdd:pfam03274 139 ITWKFTCQEDPSGKRYMGTQFWVPPLGQVNIQFYKNYQIVICCDALihDPFANIFHGTEEEMYDIDSEPDIWCTPSLCFK 218

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1464311287  84 LCYE------GHALSF---DKLRCWLLHLKGGHPDG 110
Cdd:pfam03274 219 VIYEplrgaiGSAVFImekHEKKCSLVKPSTSCPEG 254
 
Name Accession Description Interval E-value
Foamy_BEL pfam03274
Foamy virus BEL 1/2 protein;
6-110 1.78e-15

Foamy virus BEL 1/2 protein;


Pssm-ID: 281291  Cd Length: 301  Bit Score: 75.52  E-value: 1.78e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464311287   6 QPWQFQCLVDKYGKKCIMTYFWMPPLGQVTIRLYNNLTVITICQGL--DPFVNLNDCGSNLDESDCSEPDVFCCGPLCYK 83
Cdd:pfam03274 139 ITWKFTCQEDPSGKRYMGTQFWVPPLGQVNIQFYKNYQIVICCDALihDPFANIFHGTEEEMYDIDSEPDIWCTPSLCFK 218

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1464311287  84 LCYE------GHALSF---DKLRCWLLHLKGGHPDG 110
Cdd:pfam03274 219 VIYEplrgaiGSAVFImekHEKKCSLVKPSTSCPEG 254
CysRS_core cd00672
catalytic core domain of cysteinyl tRNA synthetase; Cysteinyl tRNA synthetase (CysRS) ...
 37-103 6.68e-03

catalytic core domain of cysteinyl tRNA synthetase; Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.


Pssm-ID: 173899 [Multi-domain]  Cd Length: 213  Bit Score: 37.17  E-value: 6.68e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464311287  37 RLYNNLTviticQGLDPFVNLNDCGSNLdesdcsepdvFCCGPLCYKLCYEGHA---LSFDKLRCWLLHL 103
Cdd:cd00672     1 RLYNTLT-----RQKEEFVPLNPGLVTM----------YVCGPTVYDYAHIGHArtyVVFDVLRRYLEDL 55
 
Name Accession Description Interval E-value
Foamy_BEL pfam03274
Foamy virus BEL 1/2 protein;
6-110 1.78e-15

Foamy virus BEL 1/2 protein;


Pssm-ID: 281291  Cd Length: 301  Bit Score: 75.52  E-value: 1.78e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464311287   6 QPWQFQCLVDKYGKKCIMTYFWMPPLGQVTIRLYNNLTVITICQGL--DPFVNLNDCGSNLDESDCSEPDVFCCGPLCYK 83
Cdd:pfam03274 139 ITWKFTCQEDPSGKRYMGTQFWVPPLGQVNIQFYKNYQIVICCDALihDPFANIFHGTEEEMYDIDSEPDIWCTPSLCFK 218

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1464311287  84 LCYE------GHALSF---DKLRCWLLHLKGGHPDG 110
Cdd:pfam03274 219 VIYEplrgaiGSAVFImekHEKKCSLVKPSTSCPEG 254
CysRS_core cd00672
catalytic core domain of cysteinyl tRNA synthetase; Cysteinyl tRNA synthetase (CysRS) ...
 37-103 6.68e-03

catalytic core domain of cysteinyl tRNA synthetase; Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.


Pssm-ID: 173899 [Multi-domain]  Cd Length: 213  Bit Score: 37.17  E-value: 6.68e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464311287  37 RLYNNLTviticQGLDPFVNLNDCGSNLdesdcsepdvFCCGPLCYKLCYEGHA---LSFDKLRCWLLHL 103
Cdd:cd00672     1 RLYNTLT-----RQKEEFVPLNPGLVTM----------YVCGPTVYDYAHIGHArtyVVFDVLRRYLEDL 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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