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Conserved domains on  [gi|1464310123|ref|YP_009508078|]
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59-kDa readthrough protein, partial [Japanese soil-borne wheat mosaic virus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Virgaviridae_RdRp cd23251
RNA-dependent RNA polymerase (RdRp) in the family Virgaviridae of positive-sense ...
35-461 0e+00

RNA-dependent RNA polymerase (RdRp) in the family Virgaviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the RdRp of RNA viruses belonging to the family Virgaviridae, order Martellivirales. The Virgaviridae is a family of plant viruses with rod-shaped virions, a (+)ssRNA genome with a 3'-terminal tRNA-like structure and a replication protein similar to those of the alpha-like supergroup. Plants serve as natural hosts. The name of the family is derived from the Latin word virga (rod), as all viruses in this family are rod-shaped. There are currently 59 species in this family, divided among seven genera: Goravirus, Furovirus, Hordeivirus, Pecluvirus, Pomovirus, Tobamovirus, and Tobravirus. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


:

Pssm-ID: 438101  Cd Length: 427  Bit Score: 841.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123  35 FPGNSTVDSYFDGYEVATTDISIEVENCTVHTNKNTKVWQEKQGLVPVMRTAMPEKRQNGMVESLLALKKRNMAAPKLQE 114
Cdd:cd23251     1 FPGNSTRDSDFDGYTVATSDINLNVEDCTLDPSKSVKVWQEKEGLKPVLRTAMPEKRQNGLLESLLALIKRNMAAPKLQG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 115 AVNEFEVIEHTIDRARTIFLNEDLIDTTPASTVESNMRWWEKQSYTARKQLLSETKILHEIDVCTYNFMIKNDVKPKMDL 194
Cdd:cd23251    81 AVNEFETIERVIKKAKDVFFDEDLIDRSPLSTRESFLRWWDKQSTTARAQLLADDRVLDEIDVCTYNFMIKNDVKPKLDL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 195 TPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTVEFLDPEEEYQSFEIDFSKFDKSK 274
Cdd:cd23251   161 SPQSEYAALQTVVYPDKIVNALFGPIFKEINERILSALDPHVVFNTRMTAEELNETVEFLDPDEEYDALEIDFSKFDKSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 275 TSLHIRTVIEFYKLFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEKAKFM 354
Cdd:cd23251   241 TSLHIRAVIELYKLFGLDGMLAFLWEKSQCQTTVKDRQNGIKAYLLYQQKSGNCDTYGSNTWSAALALLSMLPLEKAIFM 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 355 IFGGDDSLILFPKQLCVEDPCRRLASLWNFDCKLFDFQHNMFCGKFLLKVGDKFKFAPDPLKLMTKMGRKDIKDGALLSE 434
Cdd:cd23251   321 IFGGDDSLILFPKGLVIPDPCRRLASLWNFECKLFKFKYGYFCGKFLLKHGDGYIFYPDPLKLITKLGRKDIKDGEHLSE 400
                         410       420
                  ....*....|....*....|....*..
gi 1464310123 435 IFVSIGDNYRAYRDYRIIEQLAPAVRE 461
Cdd:cd23251   401 IFVSICDNYKSYRDYRVLEALDVAVVE 427
 
Name Accession Description Interval E-value
Virgaviridae_RdRp cd23251
RNA-dependent RNA polymerase (RdRp) in the family Virgaviridae of positive-sense ...
35-461 0e+00

RNA-dependent RNA polymerase (RdRp) in the family Virgaviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the RdRp of RNA viruses belonging to the family Virgaviridae, order Martellivirales. The Virgaviridae is a family of plant viruses with rod-shaped virions, a (+)ssRNA genome with a 3'-terminal tRNA-like structure and a replication protein similar to those of the alpha-like supergroup. Plants serve as natural hosts. The name of the family is derived from the Latin word virga (rod), as all viruses in this family are rod-shaped. There are currently 59 species in this family, divided among seven genera: Goravirus, Furovirus, Hordeivirus, Pecluvirus, Pomovirus, Tobamovirus, and Tobravirus. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438101  Cd Length: 427  Bit Score: 841.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123  35 FPGNSTVDSYFDGYEVATTDISIEVENCTVHTNKNTKVWQEKQGLVPVMRTAMPEKRQNGMVESLLALKKRNMAAPKLQE 114
Cdd:cd23251     1 FPGNSTRDSDFDGYTVATSDINLNVEDCTLDPSKSVKVWQEKEGLKPVLRTAMPEKRQNGLLESLLALIKRNMAAPKLQG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 115 AVNEFEVIEHTIDRARTIFLNEDLIDTTPASTVESNMRWWEKQSYTARKQLLSETKILHEIDVCTYNFMIKNDVKPKMDL 194
Cdd:cd23251    81 AVNEFETIERVIKKAKDVFFDEDLIDRSPLSTRESFLRWWDKQSTTARAQLLADDRVLDEIDVCTYNFMIKNDVKPKLDL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 195 TPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTVEFLDPEEEYQSFEIDFSKFDKSK 274
Cdd:cd23251   161 SPQSEYAALQTVVYPDKIVNALFGPIFKEINERILSALDPHVVFNTRMTAEELNETVEFLDPDEEYDALEIDFSKFDKSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 275 TSLHIRTVIEFYKLFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEKAKFM 354
Cdd:cd23251   241 TSLHIRAVIELYKLFGLDGMLAFLWEKSQCQTTVKDRQNGIKAYLLYQQKSGNCDTYGSNTWSAALALLSMLPLEKAIFM 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 355 IFGGDDSLILFPKQLCVEDPCRRLASLWNFDCKLFDFQHNMFCGKFLLKVGDKFKFAPDPLKLMTKMGRKDIKDGALLSE 434
Cdd:cd23251   321 IFGGDDSLILFPKGLVIPDPCRRLASLWNFECKLFKFKYGYFCGKFLLKHGDGYIFYPDPLKLITKLGRKDIKDGEHLSE 400
                         410       420
                  ....*....|....*....|....*..
gi 1464310123 435 IFVSIGDNYRAYRDYRIIEQLAPAVRE 461
Cdd:cd23251   401 IFVSICDNYKSYRDYRVLEALDVAVVE 427
RdRP_2 pfam00978
RNA dependent RNA polymerase; This family may represent an RNA dependent RNA polymerase. The ...
52-488 0e+00

RNA dependent RNA polymerase; This family may represent an RNA dependent RNA polymerase. The family also contains the following proteins: 2A protein from bromoviruses putative RNA dependent RNA polymerase from tobamoviruses Non structural polyprotein from togaviruses


Pssm-ID: 395779  Cd Length: 440  Bit Score: 561.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123  52 TTDISIEVENCTVHTNKNTKVWQEKQ-GLVPVMRTAMPEKRQNGMVESLLALKKRNMAAPKLQEAVNEFEVIEHTIDRAR 130
Cdd:pfam00978   1 TSDISLDLDDCRLDPSKSKPKPKDKEpYLVPVLRTAAPSPRQNTLKEVLLALKKRNFNVPELQESVDLDDTAERVAERFK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 131 TIFLNEDLIDTTP--ASTVESNMRWWEKQSYTARKQLLSE-TKILHEIDVCTYNFMIKNDVKPKMDLTPQSEYAALQTVV 207
Cdd:pfam00978  81 KSFLDKEKLDKLDpiINTTENVSRWLDKQSGKKAAQLKLDdLVPLHEVDLDRYKHMIKSDVKPKLDLSPQSERPALQTIT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 208 YPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTVEFLDPEEEyqSFEIDFSKFDKSKTSLHIRTVIEFYK 287
Cdd:pfam00978 161 YHDKGVTAYFSPIFRELFERLLYVLKPKIVFPTGMTSSLIAEHFEFLDASED--FLEIDFSKFDKSQGELHLLVQLEILK 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 288 LFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEKAKFMIFGGDDSLILFPK 367
Cdd:pfam00978 239 LLGLDPELADLWFKFHRQSYIKDRKNGVGFSVDYQRKSGDANTYLGNTLVTMAMLASVYDLEKIDCAAFSGDDSLIFSPK 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 368 QLcvEDPCRRLASLWNFDCKLFDFQHNMFCGKFLLKVGDKFKFAPDPLKLMTKMGRKDIKD-GALLSEIFVSIGDNYRAY 446
Cdd:pfam00978 319 PI--EDPASRFATLFNMEAKVFDPSVPYFCSKFLLEVDGGAFFVPDPLKLLQKLGKKKIPDdEQHLDEIFTSLCDLTKSF 396
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1464310123 447 -RDYRIIEQLAPAVRERYRTGEDPTAALIALKKYIFSFELFAK 488
Cdd:pfam00978 397 nDDCVVLELLDLAVARYYKYAPEGYAALCALHKALSSFTLFFS 439
 
Name Accession Description Interval E-value
Virgaviridae_RdRp cd23251
RNA-dependent RNA polymerase (RdRp) in the family Virgaviridae of positive-sense ...
35-461 0e+00

RNA-dependent RNA polymerase (RdRp) in the family Virgaviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the RdRp of RNA viruses belonging to the family Virgaviridae, order Martellivirales. The Virgaviridae is a family of plant viruses with rod-shaped virions, a (+)ssRNA genome with a 3'-terminal tRNA-like structure and a replication protein similar to those of the alpha-like supergroup. Plants serve as natural hosts. The name of the family is derived from the Latin word virga (rod), as all viruses in this family are rod-shaped. There are currently 59 species in this family, divided among seven genera: Goravirus, Furovirus, Hordeivirus, Pecluvirus, Pomovirus, Tobamovirus, and Tobravirus. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438101  Cd Length: 427  Bit Score: 841.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123  35 FPGNSTVDSYFDGYEVATTDISIEVENCTVHTNKNTKVWQEKQGLVPVMRTAMPEKRQNGMVESLLALKKRNMAAPKLQE 114
Cdd:cd23251     1 FPGNSTRDSDFDGYTVATSDINLNVEDCTLDPSKSVKVWQEKEGLKPVLRTAMPEKRQNGLLESLLALIKRNMAAPKLQG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 115 AVNEFEVIEHTIDRARTIFLNEDLIDTTPASTVESNMRWWEKQSYTARKQLLSETKILHEIDVCTYNFMIKNDVKPKMDL 194
Cdd:cd23251    81 AVNEFETIERVIKKAKDVFFDEDLIDRSPLSTRESFLRWWDKQSTTARAQLLADDRVLDEIDVCTYNFMIKNDVKPKLDL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 195 TPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTVEFLDPEEEYQSFEIDFSKFDKSK 274
Cdd:cd23251   161 SPQSEYAALQTVVYPDKIVNALFGPIFKEINERILSALDPHVVFNTRMTAEELNETVEFLDPDEEYDALEIDFSKFDKSK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 275 TSLHIRTVIEFYKLFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEKAKFM 354
Cdd:cd23251   241 TSLHIRAVIELYKLFGLDGMLAFLWEKSQCQTTVKDRQNGIKAYLLYQQKSGNCDTYGSNTWSAALALLSMLPLEKAIFM 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 355 IFGGDDSLILFPKQLCVEDPCRRLASLWNFDCKLFDFQHNMFCGKFLLKVGDKFKFAPDPLKLMTKMGRKDIKDGALLSE 434
Cdd:cd23251   321 IFGGDDSLILFPKGLVIPDPCRRLASLWNFECKLFKFKYGYFCGKFLLKHGDGYIFYPDPLKLITKLGRKDIKDGEHLSE 400
                         410       420
                  ....*....|....*....|....*..
gi 1464310123 435 IFVSIGDNYRAYRDYRIIEQLAPAVRE 461
Cdd:cd23251   401 IFVSICDNYKSYRDYRVLEALDVAVVE 427
RdRP_2 pfam00978
RNA dependent RNA polymerase; This family may represent an RNA dependent RNA polymerase. The ...
52-488 0e+00

RNA dependent RNA polymerase; This family may represent an RNA dependent RNA polymerase. The family also contains the following proteins: 2A protein from bromoviruses putative RNA dependent RNA polymerase from tobamoviruses Non structural polyprotein from togaviruses


Pssm-ID: 395779  Cd Length: 440  Bit Score: 561.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123  52 TTDISIEVENCTVHTNKNTKVWQEKQ-GLVPVMRTAMPEKRQNGMVESLLALKKRNMAAPKLQEAVNEFEVIEHTIDRAR 130
Cdd:pfam00978   1 TSDISLDLDDCRLDPSKSKPKPKDKEpYLVPVLRTAAPSPRQNTLKEVLLALKKRNFNVPELQESVDLDDTAERVAERFK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 131 TIFLNEDLIDTTP--ASTVESNMRWWEKQSYTARKQLLSE-TKILHEIDVCTYNFMIKNDVKPKMDLTPQSEYAALQTVV 207
Cdd:pfam00978  81 KSFLDKEKLDKLDpiINTTENVSRWLDKQSGKKAAQLKLDdLVPLHEVDLDRYKHMIKSDVKPKLDLSPQSERPALQTIT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 208 YPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTVEFLDPEEEyqSFEIDFSKFDKSKTSLHIRTVIEFYK 287
Cdd:pfam00978 161 YHDKGVTAYFSPIFRELFERLLYVLKPKIVFPTGMTSSLIAEHFEFLDASED--FLEIDFSKFDKSQGELHLLVQLEILK 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 288 LFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEKAKFMIFGGDDSLILFPK 367
Cdd:pfam00978 239 LLGLDPELADLWFKFHRQSYIKDRKNGVGFSVDYQRKSGDANTYLGNTLVTMAMLASVYDLEKIDCAAFSGDDSLIFSPK 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 368 QLcvEDPCRRLASLWNFDCKLFDFQHNMFCGKFLLKVGDKFKFAPDPLKLMTKMGRKDIKD-GALLSEIFVSIGDNYRAY 446
Cdd:pfam00978 319 PI--EDPASRFATLFNMEAKVFDPSVPYFCSKFLLEVDGGAFFVPDPLKLLQKLGKKKIPDdEQHLDEIFTSLCDLTKSF 396
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1464310123 447 -RDYRIIEQLAPAVRERYRTGEDPTAALIALKKYIFSFELFAK 488
Cdd:pfam00978 397 nDDCVVLELLDLAVARYYKYAPEGYAALCALHKALSSFTLFFS 439
ps-ssRNAv_Martellivirales_RdRp cd23208
catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the order Martellivirales of ...
178-366 1.12e-90

catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the order Martellivirales of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the catalytic core domain of RdRp of RNA viruses belonging to the order Martellivirales, class Alsuviricetes. The order Martellivirales consists of seven families: Bromoviridae, Closteroviridae, Endornaviridae, Kitaviridae, Mayoviridae, Togaviridae, and Virgaviridae. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438058 [Multi-domain]  Cd Length: 190  Bit Score: 275.02  E-value: 1.12e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 178 CTYNFMIKNDVKPKMDLTPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYNSRM-NAEELNRTVEFLDP 256
Cdd:cd23208     1 DKYEMMIKSDVKPKLDLTAQQEYPKLQTIVYHDKNITAIFCPIFKELFERLLSCLKKKVVIYTGMmTSAELNDFISALHL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 257 EEEYQSFEIDFSKFDKSKTSLHIRTVIEFYKLFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNTW 336
Cdd:cd23208    81 ESGYYVLEIDFSKFDKSQGALHLLTELLILRRLGVDEPLLVLWEFAHTQSTTRDINNGISFETAYQRKSGDAFTYFGNTL 160
                         170       180       190
                  ....*....|....*....|....*....|
gi 1464310123 337 SAALALLETMPLEKAKFMIFGGDDSLILFP 366
Cdd:cd23208   161 VTMAALLDVLDLEKIVCIAFGGDDSLIFSK 190
Kitaviridae_RdRp cd23254
catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the family Kitaviridae of ...
180-441 2.54e-75

catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the family Kitaviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the catalytic core domain of RdRp of RNA viruses belonging to the family Kitaviridae, order Martellivirales. The family Kitaviridae is composed of five recognized species among the three genera: Blueberry necrotic ring blotch virus and Tea plant necrotic ring blotch virus (genus Blunervirus); Citrus leprosis virus C and Citrus leprosis virus C2 (genus Cilevirus); and Hibiscus green spot virus 2 (genus Higrevirus). Although related, there are considerable physical and genetic distinctions between members of the different genera. For example, cile- and higreviruses are associated with a bacilliform virion, whereas a spherical virion has been observed for the lone blunervirus for which microscopy has been reported. Moreover, the replication-associated polyproteins are encoded by a single genomic RNA for cile- and higreviruses, but are split between two genomic RNAs for blunerviruses. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438104  Cd Length: 267  Bit Score: 238.20  E-value: 2.54e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 180 YNFMIKNDVKPKMDLTPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEE----LNRTVEFLD 255
Cdd:cd23254     3 YSFMIKRNPKPNLTVDAAYKYPALQTIAYHDKDINAIFCPIFRELKKRLLAVLKPNFVIFTDMSPEDfeelLNRRFPPEV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 256 PEEEYQSFEIDFSKFDKSKTSLHIRTVIEFYKLFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNT 335
Cdd:cd23254    83 LSKLLHKLEIDISKYDKSQGELALLFECKLMRRFGVPEELVELWFNAHVLTTLYDRTNKLKALVEYQRKSGDASTFFGNT 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 336 WSAALALLETMPLEKAKFMIFGGDDSLILFPKQLCVEDPCrRLASLWNFDCKLFDFQHNMFCGKFLLKVGDKFKFAPDPL 415
Cdd:cd23254   163 LFLMAVLADLFDLSDLELALFSGDDSLLFGRNLLDYDDSQ-HFALKFNLESKFLNYKYPYFCSKFLLPVGGRWYFVPDPV 241
                         250       260
                  ....*....|....*....|....*.
gi 1464310123 416 KLMTKMGRKDIKDGALLSEIFVSIGD 441
Cdd:cd23254   242 KLLTKLGRHDLVNWEHVEEYRISLKD 267
Closteroviridae_RdRp cd23253
RNA-dependent RNA polymerase (RdRp) in the family Closteroviridae of positive-sense ...
178-441 1.02e-54

RNA-dependent RNA polymerase (RdRp) in the family Closteroviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the RdRp of RNA viruses belonging to the family Closteroviridae, order Martellivirales. Viruses in the family Closteroviridae have a mono-, bi- or tripartite (+)ssRNA genome of 13-19 kb, and non-enveloped, filamentous particles 650-2200 nm long and 12 nm in diameter. They infect plants, mainly dicots, many of which are fruit crops. Members of the family are classified into four genera: Ampelovirus, Closterovirus, Crinivirus and Velarivirus. Their genetic diversity is primarily influenced by strong negative selection and recombination. Closteroviridae viruses are mostly phloem-restricted and induce specific cytoplasmic aggregates of virus particles intermingled with membranous vesicles derived from the endoplasmic reticulum and possibly mitochondria. Their transmission is by aphids, whiteflies, pseudococcid mealybugs or soft scale insects in a semi-persistent manner. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438103  Cd Length: 266  Bit Score: 184.69  E-value: 1.02e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 178 CTYNFMIKNDVKPKMDLTPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTVEFL--D 255
Cdd:cd23253     1 TSFKLMVKGDMKPKLDSSSLSKYPPGQNIVYHERAINAFFSPIFLEVFDRIKYCLSDKIILYSGMNLEELASLIRSKlgD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 256 PEEEYQSFEIDFSKFDKSKTSLhIRTVIE-FYKLFGLEEMLAFLWEKSQ---CQTTVKdrlNGITAYLLYQQKSGNCDTY 331
Cdd:cd23253    81 PLDEYKTVEIDFSKFDKSQGVL-FKVYEElVYKFFGFSEELYDNWKCSEyfsCRATSD---SGVSLELGAQRRTGSPNTW 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 332 GSNTWSAALALLETMPLEKAKFMIFGGDDSLILFPKQLcvEDPCRRLASLWNFDCKLFDFQHNMFCGKFLLKVGDKFKFA 411
Cdd:cd23253   157 LGNTLVTLGILSSSYDLDDIDLLLVSGDDSLIFSKKPL--PNKANEINLDFGFEAKFIENSVPYFCSKFIIEDRGKIKVV 234
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1464310123 412 PDPLKLMTKMGR-KDIKDGALLSEIFVSIGD 441
Cdd:cd23253   235 PDPVKLFEKLSVpIRLEDETLLKERFTSFKD 265
ps-ssRNAv_Alsuviricetes_RdRp cd23182
catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the class Alsuviricetes of ...
180-366 1.42e-45

catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the class Alsuviricetes of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the catalytic core domain of RdRp of RNA viruses belonging to the class Alsuviricetes, phylum: Kitrinoviricota. Alsuviricetes is a class of [(+)ssRNA] viruses which infect eukaryotes. The name of the group is a syllabic abbreviation of "alpha supergroup" with the suffix -viricetes indicating a virus class. The class Alsuviricetes includes three orders: Hepelivirales, Martellivirales, and Tymovirales. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438032 [Multi-domain]  Cd Length: 187  Bit Score: 157.76  E-value: 1.42e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 180 YNFMIKNDVKPKMDlTPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTVEFLDPEEE 259
Cdd:cd23182     3 IDFLIKTQQKVSPK-TPFNTGKAGQTIAAHSKSINFVLGPWIRYLEERLRDGSRTHRYSNGLMDEEEAMLSQWKINHVPH 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 260 YQSFEIDFSKFDKSKTSLHIRTVIEFYKLFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNTWSAA 339
Cdd:cd23182    82 ATFVSNDYTAFDKSHNGESLLLEAAIMRRIGTPAAAPNLFIELHGKRTLRAKVLGGSGELDGMRDSGAAWTYCRNTDYNL 161
                         170       180
                  ....*....|....*....|....*..
gi 1464310123 340 LALLETMPLeKAKFMIFGGDDSLILFP 366
Cdd:cd23182   162 AVMLSLYRL-KVKPAAFSGDDSLLCGS 187
Mayoviridae_RdRp cd23256
RNA-dependent RNA polymerase (RdRp) in the family Mayoviridae of positive-sense ...
180-464 2.57e-42

RNA-dependent RNA polymerase (RdRp) in the family Mayoviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the RdRp of RNA viruses belonging to the family Mayoviridae, order Martellivirales. The Mayoviridae family consists of two genera, Idaeovirus and Pteridovirus. The genus Idaeovirus contains Raspberry bushy dwarf virus (RBDV), named after the host with which it was first associated (red raspberry, Rubus idaeu) and the disease which is characterized by bushiness (stunting and proliferation of canes); RBDV has recently been found causing an infection in grapevines. RBDV occurs in all tissues of the plant, including seed and pollen, and is transmitted in association with pollen, both vertically to the seed and horizontally to the pollinated plant; this is the only known method of natural spread of RBDV. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438106  Cd Length: 329  Bit Score: 153.75  E-value: 2.57e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 180 YNFMIKNDVKPKMDLTPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALKPHVV----YNSRMnAEELNRtvEFLD 255
Cdd:cd23256    35 YSHMIKRDRKPVLTTAVQSEYTKAATITYHDKDITQVATPIFRQFKTRLLACKKSNLCipldHDHDI-SGWLTN--RHLG 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 256 pEEEYQSFEIDFSKFDKSKTSLHIRTVIEFYKLFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNT 335
Cdd:cd23256   112 -SENGTFTEIDFSKFDKSQGELHQLIQDLILLRFGCDPEFVSLWSTAHRSSSIKDQNVGISFKTDFQRRTGDAFTFLGNS 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 336 WSAALAL---LETMPLEKAKFMIFGGDDSLILFPKQLCVedPCRRLASLWNFDCKLFDFQHNMFCGKFLLKVGDKFKFAP 412
Cdd:cd23256   191 LVTAVMLayvLSFEDEKKIRYMLVGGDDSLICSYGPISV--PLEPLSTIFNMSCKLIQPSCPYFASRYIIRVGDEILCVP 268
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1464310123 413 DPLKLMTKMGRKDIKDG-ALLSEIFVSIGDNYRAYRDYRIIEQLAPAVRERYR 464
Cdd:cd23256   269 DPYKLLVKMGRKDIPDNeASLEEVRTGLADSAKPLFDDEVKQKLSILVQIRYN 321
Bromoviridae_RdRp cd23252
RNA-dependent RNA polymerase (RdRp) in the family Bromoviridae of positive-sense ...
54-422 3.72e-42

RNA-dependent RNA polymerase (RdRp) in the family Bromoviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the RdRp of RNA viruses belonging to the family Bromoviridae, order Martellivirales. The Bromoviridae family of plant viruses contains tri-segmented, (+)ssRNA viruses with a total genome size of about 8 kb. There are six genera in this family: Alfamovirus, Anulavirus, Bromovirus, Cucumovirus, Ilarvirus, and Oleavirus. Bromoviridae virions are variable in morphology (spherical or bacilliform) and are transmitted mechanically, in/on the pollen and non-persistently by insect vectors. Members of the family cause major disease epidemics in fruit, vegetable and fodder crops such as tomato, cucurbits, bananas, and alfalfa. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438102  Cd Length: 332  Bit Score: 153.15  E-value: 3.72e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123  54 DISIEVENCTVHTNKNtkVWQEKQG--LVPVMRTAMPEKRQNGMVESLLALKKRNMAAPKLQEAVNEFEVIEHTIDRART 131
Cdd:cd23252     1 DISLDVDHCRLDQSDF--NDWTKPDgyLEPVLNTGSGSKRVGTQREALLAIKKRNANVPELGDSVDLDRVSNAVANRFLT 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 132 IFLNEDLIDTtpastvesnmrwwekqsytarkqllsetkilheidvctYNFMIKNDVKPKMDLTPQSEYAALQTVVYPDK 211
Cdd:cd23252    79 TVIDVDRLDK--------------------------------------YMHMIKSDLKPVEDDSLHVERPVPATITYHKK 120
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 212 IVNALFGPVMKEINERIRYALKPHVV-----YNS--RMNAEELNRTVEFLdpeeeyqsfEIDFSKFDKSKTSLHIRTVIE 284
Cdd:cd23252   121 GIVMQFSPLFLAAFERLLRCLRSKIVipsgkIHQlfMIDPSVLNASKHFK---------EIDFSKFDKSQGELHHEIQEH 191
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 285 FYKLFGLEEMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNTWS--AALALLETMPLEKAKFMIFGGDDSL 362
Cdd:cd23252   192 ILNALGCPAPFTKWWFDFHRRSYISDRRAGVGFSVDFQRRTGDAFTYLGNTLVtlAELAYVYDLDDPNFDFVVASGDDSL 271
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1464310123 363 ILFPKQLCVEDP--CrrlASLWNFDCKlfdFQHNM--FCGKFLLKV--GDKFKFA-PDPLKLMTKMG 422
Cdd:cd23252   272 IGSVEPLPRDDEdlF---TTLFNFEAK---FPHNQpfICSKFLLSDefGDENVFSvPDPLKLLQRLG 332
Endornaviridae_RdRp cd23255
catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the family Endornaviridae of ...
211-383 1.89e-11

catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the family Endornaviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the catalytic core domain of RdRp of RNA viruses belonging to the family Endornaviridae, order Martellivirales. The family Endornaviridae includes viruses with linear (+)ssRNA genomes that range from 9.7 to 17.6 kb. The family consists of two genera, Alphaendornavirus and Betaendornavirus. Alphaendornavirus includes species whose members infect plants, fungi and oomycetes, while the genus Betaendornavirus includes species whose members infect ascomycete fungi. Plant endornaviruses are transmitted only through the gametes. A conserved RNA-dependent RNA polymerase domain located in the C-terminal region of the polyprotein is a feature common to all endornaviruses. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438105  Cd Length: 237  Bit Score: 64.09  E-value: 1.89e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 211 KIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTVEFLDPEEEYqsFEIDFSKFDKsKTSLH-IRTVIEFYKLF 289
Cdd:cd23255    66 KGICAIFSPIFNEAKKRLKSLLKPKVVYADGLTPDELSARLRLVKNVKYF--FEDDLSKQDR-QTDKPiIDVEMELYKLL 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 290 GLEEMLAFLWEksQCQTTVKDRLNGITAYLLYQQKSGNCDTygsntwsaALA-----LLETMPLEK-----AKFMIFGGD 359
Cdd:cd23255   143 GVDPNVIELWR--EVHENWRFKGKGVRGVGDAMRLTGQATT--------ALGnvitnLLVHSRLVKrngsnLKLMLVLGD 212
                         170       180
                  ....*....|....*....|....
gi 1464310123 360 DSLILFPKQLCVEDPCRRLASLWN 383
Cdd:cd23255   213 DNLILTDTKIDLENLRKEIAEYHN 236
ps-ssRNAv_Hepelivirales_RdRp cd23209
catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the order Hepelivirales of ...
180-366 5.77e-10

catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the order Hepelivirales of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the catalytic core domain of RdRp of RNA viruses belonging to the order Hepelivirales, class Alsuviricetes. This Hepelivirales order consists of four families: Alphatetraviridae, Benyviridae, Hepeviridae, and Matonaviridae. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438059 [Multi-domain]  Cd Length: 183  Bit Score: 58.65  E-value: 5.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 180 YNFMIKNDVKPKMDLTPQSEYAALQTVVYPdKIVNALFGPVMKEINERIRYALKPHVVYNsrmNAEELNRTVEFLDPEEE 259
Cdd:cd23209     3 ITFFQKDCRKFTDCEPVAHGKAGQGISAWS-KELCFVFGPWFRALEKILRRALKPNVLYA---NGHEAEPFVDKINQAHS 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 260 YQSFEIDFSKFDKSKTSLHIRTVIEFYKLFGLEEMLAFLW----EKSQCQttvkdrLNGITAYLLYQQKSGNCDTYGSNT 335
Cdd:cd23209    79 AVFIENDFTEFDSTQNLFSLLVELEILEACGMPPALAELYralrAKWTLQ------AREGSLEGTCKKTSGEPGTLLHNT 152
                         170       180       190
                  ....*....|....*....|....*....|..
gi 1464310123 336 -WSAALALlETMPLEKAKFMIFGGDDSLILFP 366
Cdd:cd23209   153 iWNMAVMM-HMVRGGVRKAAAFKGDDSVVCCS 183
Hepeviridae_RdRp cd23259
catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the family Hepeviridae of ...
211-364 7.08e-04

catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the family Hepeviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the catalytic core domain of RdRp of RNA viruses belonging to the family Hepeviridae, order Hepelivirales. The family Hepeviridae includes enterically transmitted small non-enveloped [(+)ssRNA viruses. It includes the genera Piscihepevirus, whose members infect fish, and Orthohepevirus, whose members infect mammals and birds. Members of the genus Orthohepevirus include hepatitis E virus, which is responsible for self-limiting acute hepatitis in humans and several mammalian species; the infection may become chronic in immunocompromised individuals. Avian hepatitis E virus causes hepatitis-splenomegaly syndrome in chickens. Hepeviridae genomes (approximately 7.2 kb) have 5' methyl G caps and 3' poly (A) tails, and contain three ORFS. They have two mRNAs, a genome length and a subgenomic mRNA: the genome-length mRNA is translated to produce proteins required for RNA replication while the subgenomic mRNA is used to produce the capsid protein. Some of the capsid protein is glycosylated, which is an unusual finding for an unenveloped virus. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438109  Cd Length: 274  Bit Score: 41.66  E-value: 7.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 211 KIVNALFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTVEfldPEEEYQSFEIDFSKFDKSKTSLHIRTVIEFYKLFG 290
Cdd:cd23259    97 KTFCALFGPWFRAIEKAIVALLPPNIFYGDAYEESVFSAAVA---GAGSCRVFENDFSEFDSTQNNFSLGLECEIMEECG 173
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1464310123 291 LEEMLAFLWEKSQCQTTV---KDRLNGitaylLYQQKSGNCDTYGSNT-WSAALaLLETMPLEKAKFMIFGGDDSLIL 364
Cdd:cd23259   174 MPQWLVRLYHLVRSAWVLqapKESLRG-----FWKKHSGEPGTLLWNTvWNMAV-IAHCYEFRDLAVAAFKGDDSVVL 245
ps-ssRNA_RdRp_Tymovirales cd23207
catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the order Tymovirales of ...
216-366 8.66e-04

catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the order Tymovirales of positive-sense single-stranded RNA [(+)ssRNA] viruses; This group contains the catalytic core domain of RdRp of RNA viruses belonging to the order Tymovirales. The Tymovirales order contains viruses that mostly infect plants, have a single molecule of (+)ssRNA, and which are united by the similarities in their replication-associated polyproteins. Tymovirales contains five families (Alpha-, Beta-, Delta- and Gammaflexiviridae and Tymoviridae) and groups mostly plant-infecting agents, although a few Tymovirales members have either fungal or insect hosts. Botrytis virus F (BVF), isolated from the fungus Botrytis cinerea, is a flexuous mycovirus that is typical of members of the genus Mycoflexivirus (family Gammaflexiviridae). The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.


Pssm-ID: 438057 [Multi-domain]  Cd Length: 188  Bit Score: 40.46  E-value: 8.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464310123 216 LFGPVMKEINERIRYALKPHVVYNSRMNAEELNRTV-EFLDPEEeyqSFEIDFSKFDKSKTSLHIRTVIEFYKLFGLEEM 294
Cdd:cd23207    46 RFGPYARYMRRFINADLPPNIYIHCGKTPEDLSKWCkEHWQHGP---STANDYTAFDQSQDGEFVVFEVLLMRHLHIPDD 122
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1464310123 295 L--AFLWEKSQCQTTVkdrlngitAYLLYQQKSGNCDTYGSNTwSAALALLETM-PLEKAKFMIFGGDDSLILFP 366
Cdd:cd23207   123 LieLYVDIKTNAYSHL--------GPLSIMRLTGEPGTFDFNT-DYNLALTYAKyDLPPGTPICFSGDDSVANGT 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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