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Conserved domains on  [gi|146289862|sp|Q330A5|]
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RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 1.89e-177

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 495.52  E-value: 1.89e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   1 MNPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 SGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 241 TTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTSLTMFPSTNNMKVKWQFNNK 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 146289862 321 KLTANLSPLIILSTLILPLSPMLALLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 1.89e-177

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 495.52  E-value: 1.89e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   1 MNPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 SGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 241 TTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTSLTMFPSTNNMKVKWQFNNK 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 146289862 321 KLTANLSPLIILSTLILPLSPMLALLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-296 1.94e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.13  E-value: 1.94e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   6 FTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIV--------I 76
Cdd:COG1007  104 FYALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISllygatgsL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  77 NLTYSGQWSMTKPLNST---ASIIMTLA-MAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLD 152
Cdd:COG1007  184 NLAGIAAALAAGGANSPlllLGLVLVLAgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 153 LLLLMSILSI-------LVGGWGGLNQTQLRKILAYSSIAHMGWM-TAIMVYNPTM---ALLNLAIYILLTTTTFVMLMV 221
Cdd:COG1007  264 LAADWQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLGvsaALFYLLAYLFMNLGAFAVILL 343

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 222 ----DSSTTTLS-LSHMWNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRL 296
Cdd:COG1007  344 lsrkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-268 5.05e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 5.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   25 HWVMAWIGFEMNMLAIIP-ILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTYSGQWSMT-----------KPLNS 92
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDelskaltgglnSSGLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   93 TASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILL-TWQKLAP-----MSILYQISPTINLDLLLLMSILSILVGG 166
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  167 WGGLNQTQLRKILAYSSIAHMGWMTAIM----VYNPTMALLNLAIYILLTTTTF-----VMLMVDSSTTTLSLSHMWNKM 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAKTM 242

                         250       260       270
                  ....*....|....*....|....*....|.
gi 146289862  238 PLLTTAILTIMLSLGGLPPLSGFTPKWMIIQ 268
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-338 6.80e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.39  E-value: 6.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862    6 FTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVI-------- 76
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgsl 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   77 ----NLTYSGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTI--- 149
Cdd:TIGR01770 184 nfedLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfg 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  150 ----NLDLLLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMGW----MTAIMVYNPTMALLNLAIYILLTTTTFVMLMV 221
Cdd:TIGR01770 264 fseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  222 DSST------TTLSLSHMWNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMR 295
Cdd:TIGR01770 344 LRSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 146289862  296 LtystSLTMFPSTNN--MKVKWQFNNKKLTANLSPLIILSTLILP 338
Cdd:TIGR01770 424 V----VKVMYFDKPErrIPSNPQSKAQSLLLSISALFILFLGLFP 464
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 1.89e-177

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 495.52  E-value: 1.89e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   1 MNPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 SGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 241 TTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTSLTMFPSTNNMKVKWQFNNK 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 146289862 321 KLTANLSPLIILSTLILPLSPMLALLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 1.10e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 366.82  E-value: 1.10e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   1 MNPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 SGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTiNLDLLLLMSIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 241 TTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTSLTMFPSTNNMKVKWQFNNK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 146289862 321 KLTANLSPLIILSTLILPLSP-MLALL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPaILALL 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 5.29e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 344.88  E-value: 5.29e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   1 MNPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 SGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 241 TTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTSLTMFPSTNNMKVKWQFNNK 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|...
gi 146289862 321 KLTaNLSPLIILSTLILPLSPML 343
Cdd:MTH00112 321 KNT-LTATLTTLSTLLLPLSPMI 342
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.16e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 331.12  E-value: 1.16e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   1 MNPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 SGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 241 TTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTSLTMFPSTNNMKVKWQFNNK 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 146289862 321 KLTAnLSPLIILSTLILPLSPMLALL 346
Cdd:MTH00070 321 TNNL-LSLTIILSLMLLPITPTILNL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-339 2.04e-91

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 277.20  E-value: 2.04e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   1 MNPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 SGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 241 TTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTSLTMFPSTNNMKVKWQFNNK 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330       340
                 ....*....|....*....|....
gi 146289862 321 K-----LTANLSPLIILSTLILPL 339
Cdd:MTH00041 321 ItvygvILSILSSISILGLLLIPL 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.53e-86

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 264.52  E-value: 1.53e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   1 MNPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 SGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 241 TTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTSLTMFPSTNNMKVKWQfNNK 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR-TKS 319

                        330       340
                 ....*....|....*....|....*.
gi 146289862 321 KLTANLSPLIILSTLILPLSPMLALL 346
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-346 5.20e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 180.40  E-value: 5.20e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   1 MNPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLty 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 sgqwSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQIsptINLDLLLLMSIL 160
Cdd:MTH00160  80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 241 TTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYStslTMFPSTNNMKVKWQFNNK 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKN 309

                        330       340
                 ....*....|....*....|....*.
gi 146289862 321 KLTANLSPLIILSTLILPLSPMLALL 346
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 8-315 1.84e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 173.53  E-value: 1.84e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   8 MILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTYSGQWSMt 87
Cdd:MTH00144   8 LFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS- 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  88 kplnstaSIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMS-ILSILVGG 166
Cdd:MTH00144  87 -------MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsVLSALVGS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 167 WGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMwNKMPLLTTAILT 246
Cdd:MTH00144 160 IGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIIS 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 146289862 247 IMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTSLTMFPSTNNMKVKW 315
Cdd:MTH00144 239 LLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-341 4.81e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 156.86  E-value: 4.81e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  12 TVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVInltysgQWSMTKPLN 91
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  92 STASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSILSILVGGWGGLN 171
Cdd:MTH00011  88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 172 QTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLLTTAILTIMLSL 251
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 252 GGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLtystsltMFPSTNNMKVKWQFNNKKLTANLSPLII 331
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL-------IFNFMYLSPTFSSLKSAPYEPKTKILIS 320

                        330
                 ....*....|
gi 146289862 332 LSTLILPLSP 341
Cdd:MTH00011 321 MCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-339 4.79e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 135.57  E-value: 4.79e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   8 MILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLtysgqwsMT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  88 KPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPtiNLDLLLLMSILSILVGGW 167
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 168 GGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYILLTTTTFVMLMVDSSTTTLSLSHMWNKMPLLTTAILTI 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 248 MLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYSTsltmFPSTNNMKVKwqfnNKKLTANLS 327
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS----LILSNWMINF----LMKINLLYS 304

                        330
                 ....*....|..
gi 146289862 328 PLIILSTLILPL 339
Cdd:MTH00197 305 GLFILLMMMLPL 316
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-296 1.94e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 112.13  E-value: 1.94e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   6 FTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIV--------I 76
Cdd:COG1007  104 FYALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISllygatgsL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  77 NLTYSGQWSMTKPLNST---ASIIMTLA-MAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLD 152
Cdd:COG1007  184 NLAGIAAALAAGGANSPlllLGLVLVLAgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 153 LLLLMSILSI-------LVGGWGGLNQTQLRKILAYSSIAHMGWM-TAIMVYNPTM---ALLNLAIYILLTTTTFVMLMV 221
Cdd:COG1007  264 LAADWQLLLAvlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLGvsaALFYLLAYLFMNLGAFAVILL 343

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 222 ----DSSTTTLS-LSHMWNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRL 296
Cdd:COG1007  344 lsrkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 6.02e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 109.35  E-value: 6.02e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  13 VMLGTAIVMTTSHWVMAWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIV-------------INL 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  79 TYSGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINldLLLLMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 159 ILSILVGGWGGLNQTQLRKILAYSSIAHMG---WMTAIMVYNPTMA-LLNLAIYILLTTTTFVMLMVDSSTTTL--SLSH 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFESIQAsLVYLFIYIIMSICVFSIILALNVYKNLiiEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 146289862 233 MWNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-268 5.05e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 5.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   25 HWVMAWIGFEMNMLAIIP-ILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTYSGQWSMT-----------KPLNS 92
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDelskaltgglnSSGLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   93 TASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILL-TWQKLAP-----MSILYQISPTINLDLLLLMSILSILVGG 166
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  167 WGGLNQTQLRKILAYSSIAHMGWMTAIM----VYNPTMALLNLAIYILLTTTTF-----VMLMVDSSTTTLSLSHMWNKM 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAKTM 242

                         250       260       270
                  ....*....|....*....|....*....|.
gi 146289862  238 PLLTTAILTIMLSLGGLPPLSGFTPKWMIIQ 268
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 6-332 5.31e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 107.80  E-value: 5.31e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   6 FTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTYSGQW 84
Cdd:MTH00199  99 SPILILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGET 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  85 SMtKPLNSTAS-----IIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSI 159
Cdd:MTH00199 179 SI-QGINSILTgdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLS 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 160 LSilVGGWGGLNQTQLRKILAYSSIAHMG---WMTAIMVYNPTMA-LLNLAIYILLTTTTFVMLMVDSSTTTL--SLSHM 233
Cdd:MTH00199 258 II--YGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESIQAsLIYMIIYVIMSICSFSIILSLKLTKGLivEVSGL 335

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 234 WNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLtysTSLTMFPSTNNMKV 313
Cdd:MTH00199 336 SRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV---VQIIYFQADYSILI 412

                        330
                 ....*....|....*....
gi 146289862 314 KWQFNNKKLTANLSPLIIL 332
Cdd:MTH00199 413 WQKVLKKEERLDLSKSILI 431
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
6-296 1.38e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 92.19  E-value: 1.38e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   6 FTMILLTVmLGTAIVMTTSHWVMAWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTYSG-- 82
Cdd:PRK05777 106 YLLVLFAL-LGMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGsl 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  83 ----------QWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQI------- 145
Cdd:PRK05777 185 sfagiakalaDGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafgg 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 146 SPTINLDLLLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMGWM-TAIMVYNPTM---ALLNLAIYILLTTTTFVMLMV 221
Cdd:PRK05777 265 LSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAEGysaVLFYLLAYLFMTLGAFGVISL 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 222 ----DSSTTTLS-LSHMWNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRL 296
Cdd:PRK05777 345 lrrkGGEAESISdFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-338 6.80e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.39  E-value: 6.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862    6 FTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVI-------- 76
Cdd:TIGR01770 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgsl 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   77 ----NLTYSGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTI--- 149
Cdd:TIGR01770 184 nfedLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfg 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  150 ----NLDLLLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMGW----MTAIMVYNPTMALLNLAIYILLTTTTFVMLMV 221
Cdd:TIGR01770 264 fseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  222 DSST------TTLSLSHMWNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMR 295
Cdd:TIGR01770 344 LRSYkdewieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 146289862  296 LtystSLTMFPSTNN--MKVKWQFNNKKLTANLSPLIILSTLILP 338
Cdd:TIGR01770 424 V----VKVMYFDKPErrIPSNPQSKAQSLLLSISALFILFLGLFP 464
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 5-296 7.28e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 89.82  E-value: 7.28e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   5 IFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTYSGQW 84
Cdd:COG0651  108 RFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  85 SMT----------KPLNSTASIIMTLAMAMKLGLAPFHFWVPE-----------VTQGVQLSSGL--ILLTWQKLAPMSI 141
Cdd:COG0651  188 NMAdlaarlaeldPGLLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADP 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 142 LYQISPTInldllLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYIL---LTTTTFVM 218
Cdd:COG0651  268 ALFLGTLL-----LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhaLAKALLFL 342

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 219 L--MVDSSTTTLSLSHM---WNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFY 293
Cdd:COG0651  343 AagAIERATGTRDLDKLgglGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYF 422


                 ...
gi 146289862 294 MRL 296
Cdd:COG0651  423 VRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-267 9.83e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 66.04  E-value: 9.83e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   9 ILLTVMLGTAIVMTTSHWVMAWIGFEMNMLAIIPILMKKYNPRSM---------EASTKYFLTQATASMLLMLAIVINLT 79
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  80 YSGQWSMTKPL--------------NSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILyqI 145
Cdd:MTH00198 273 FTGNEGMLGTIlsatlettnielrqGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--T 350

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 146 SPTINLDLLLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMGWMTaIMVYNPTMALLN-----LAIYILLTTTTFVMLM 220
Cdd:MTH00198 351 SLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL-IGVSAGTYESLQaswtyAVTYLVSALASFTVIC 429

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 146289862 221 VDSSTTTLS---------------------LSHMWNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMII 267
Cdd:MTH00198 430 TLEEFGTRTptsrqrdgsfgnynlvrrlvdLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-339 2.76e-11

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 64.19  E-value: 2.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   50 PRSMEASTKYFLTQATASmLLMLAIVINLTYSGQWS------MTKPLNSTASIIMTL----AMAMKLGLAPFHFWVPEV- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGS-LLMLLAILGLYFLGGGTfdllelLNLPLPFGVQTWLFLaffiAFAVKVPLFPLHTWLPDAh 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  119 ----TQGVQLSSGLILltwqKLAP---MSILYQISP---TINLDLLLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMG 188
Cdd:TIGR01972 231 veapTAGSVILAGVLL----KMGTygfLRFNLPLFPdasLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMG 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  189 WMT-AIMVYNPTM---ALLNLAIYILLTTTTFVML-MVDSSTTTLSLSHM---WNKMPLLTTAILTIMLSLGGLPPLSGF 260
Cdd:TIGR01972 307 FVLlGIFSFNELGisgAVFQMISHGLITAALFLLVgVLYERAHTRDIAKYgglANKMPVLAAFFMLFAMASLGLPGTSGF 386

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 146289862  261 TPKWMIIQEMTKndSMITPTIMAVMTLLnlyfymrLTYSTSLTMFPSTNNMKVKWQFNNKKLTANLSPLIILSTLILPL 339
Cdd:TIGR01972 387 VGEFLILLGSFK--VNPVVAFLAALGIV-------LAAAYMLTLYKRVFFGELSNPEVAEFPDLNGREIAVLAPLVVLI 456
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 1.64e-10

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 55.73  E-value: 1.64e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 146289862  291 YFYMRLTYSTSLTMFPSTNNMKVKWQFNNKKLTANLSPLIILSTLILPLSP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 50-267 1.95e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.64  E-value: 1.95e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  50 PRSMEASTKYFLTQATASMLLMLAIVINLTYSGQWS------MTKPLNSTASII----MTLAMAMKLGLAPFHFWVPEV- 118
Cdd:COG1008  157 ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaelAAAPLPLTAQLLlflaFFIAFAVKVPMFPFHTWLPDAh 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 119 ----TQGVQLSSGLIL----------------LTWQKLAPM-------SILYqisptinldllllmsilsilvGGWGGLN 171
Cdd:COG1008  237 veapTAGSVLLAGVLLkmggygllrfalplfpEASAYFAPLlaalgviGIIY---------------------GALVALA 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 172 QTQLRKILAYSSIAHMGWMT-AIMVYNPTM---ALLNLAIYILLTTTTFVML-MVDSSTTTLSLSHM---WNKMPLLTTA 243
Cdd:COG1008  296 QTDLKRLIAYSSVSHMGFVLlGIFALNPLGlqgAVLQMVSHGLITAALFLLVgVLYDRTHTRDIADLgglAKRMPVLAAL 375

                        250       260
                 ....*....|....*....|....
gi 146289862 244 ILTIMLSLGGLPPLSGFTPKWMII 267
Cdd:COG1008  376 FLLAALASLGLPGTSGFVGEFLVL 399
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
6-260 2.54e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 61.61  E-value: 2.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   6 FTMILLTVMLGTAIVMTTSHWVMAWIGFEMnmLAIIPILMKKY---NPRSMEASTKYFLTQATASMLLMLAIviNLTY-- 80
Cdd:PRK02504 112 FAAILLTATLGGMFLSGATELVMIFISLET--LSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGS--SLLYgl 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  81 -SGQWSMTK---PLNSTASIIMTLAM-------AMKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLA----PMSILYQI 145
Cdd:PRK02504 188 sGGSTQLSAialALITSPSLGLALALvfviagiAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTA 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 146 SPTINL---DLLLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNP----TMALLNLAIYILLTTTTFVM 218
Cdd:PRK02504 268 FPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYLFMNLGAFAC 347

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 146289862 219 LMVDSSTT----TLSLSHMWNKMPLLTTAILTIMLSLGGLPPLSGF 260
Cdd:PRK02504 348 VILFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 49-270 5.74e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 60.55  E-value: 5.74e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  49 NPRSMEASTKYFLTQATASMLLMLAIVINLTYSGQWSMTKPLNSTASII----MTLAMAM-------KLGLAPFHFWVPE 117
Cdd:COG1009  157 KPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILssplLTLILLLlllgafgKSAQFPLHFWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 118 -----------------VTQGVQLssglilltwqkLAPMSILYQISPTInLDLLLLMSILSILVGGWGGLNQTQLRKILA 180
Cdd:COG1009  237 amegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLA 304

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 181 YSSIAHMGWMTAIMVYNPTMAllnlAIYILLTTTTFVMLM------VDSSTTTLSLSHM---WNKMPLLTTAILTIMLSL 251
Cdd:COG1009  305 YSTVSQLGYMFLALGVGAYVA----ALFHLLTHAFFKALLflgagsVIHATGTRDIRKMgglRKKMPITAITFLIGALSL 380

                        250
                 ....*....|....*....
gi 146289862 252 GGLPPLSGFTPKWMIIQEM 270
Cdd:COG1009  381 AGIPPFAGFFSKEAILEAA 399
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 8.02e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 60.01  E-value: 8.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862   2 NPLIFTMILLTVMLGTAIVMTTSHWVMAWIGFEMNMLA--IIPILMKKYNprsMEASTKYFLTQATASMLLMLAIVINLT 79
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfMMVPMGKKES---RKASLKYFVLSAIGAYAMLYAIFLIYA 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  80 YSGQWS--------MTKPLNSTASIIMTLAMAM---KLGLAPFHFWVPEV------TQGVQLSSGLI------------L 130
Cdd:PRK08668 173 KTGTFDfadisqglINDTSTGFALIVFLFLLAFgvaKAGIFPLHVWAPDAyseapqSFSAVLSGQLSklgaygfllvlyV 252

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 131 LTWQKLAPMSILYQISPTINLDLLLLMSILSIlVGGWGGLNQTQLRKILAYSSIAHMGW-------MTAIMVYNPTMALL 203
Cdd:PRK08668 253 LPGTKLFSEFGTYRGVPLFNYILAWLGNISII-VGTLMAILQEDIKKLIAYSSVANGGYilvglglGTSLGFAGGLFHVF 331

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 204 NLAIYILLTTTTFVMLMVDSSTTTLS-LSHMWNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIM 282
Cdd:PRK08668 332 NHALFKGLFFLIFAAVIYRTGTTKISeMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 49-298 2.04e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 58.74  E-value: 2.04e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  49 NPRSMEASTKYFLTQATASMLLMLAIVinLTYSgqwsMTKPLN--------------STASIIMTLAMAMKLGLAPFHFW 114
Cdd:PRK08375 151 DRRALAAARKYLIVGLIGSTFLLIGVG--LLYG----VTGTLNmadlagalaenptvVTAFGFVLLALALKAAVFPLHTW 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 115 VPEVTQGVQLSSGLILLTWQKLAPMSILYQISPTINLDLLLLMSILSIL----------VGGWGGLNQTQLRKILAYSSI 184
Cdd:PRK08375 225 LPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLlavlallsmlVGSLAALGQDDVKRVLAYSTV 304

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 185 AHMGWMTA-IMVYNPTM---ALLNLAIYILLTTTTFV---MLMVDSSTTTLS-LSHMWNKMPLLTTAILTIMLSLGGLPP 256
Cdd:PRK08375 305 SQMGYILLgLALLTPLAlaaGLLHLLHHALMKGALFLaagAIEVTYGTRRLSeLSGLGRRMPLTAAAFAVASLSLIGVPP 384

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 146289862 257 LSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTY 298
Cdd:PRK08375 385 TSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-296 3.15e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 58.09  E-value: 3.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  51 RSMEASTKYFLTQATASMLLMLAIVINLTYSG----------QWSMTKPLNSTAS----IIMTLAMAMKLGLAPFHFWVP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSWLYGLSGgeielqeivnGLINTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 117 EVTQG-----------VQLSSGLILLTwqklAPMSILYQISPTINLDLLLLMSILSILVGGWGGLNQTQLRKILAYSSIA 185
Cdd:CHL00049 239 DVYEGsptpvvaflsvTSKVAASALAT----RIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 186 HMGW-MTAIMVYNP----TMALLNLAIYILLTTTTFVMLMVDSSTTTL----SLSHMWNKMPLLTTAILTIMLSLGGLPP 256
Cdd:CHL00049 315 QIGYvIIGIIVGDSndgyASMITYMLFYIFMNLGTFACIVLFGLRTGTdnirDYAGLYTKDPFLALSLALCLLSLGGIPP 394

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 146289862 257 LSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRL 296
Cdd:CHL00049 395 LAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-337 8.20e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.56  E-value: 8.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  48 YNPRSMEASTKYFLTQATASMLLMLAIVINLTYSGQWSM----------TKPLNSTASIIMTLAMAMKLGLAPFHFWVPE 117
Cdd:PRK08376 166 DTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMaylavkmsenPTVVAKIALALFIAGLAMKSGAVPVHMWLPD 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 118 VTQGVQLSSGLILLTWQK---LAPMSILYQI-SPTINLDL----LLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMGW 189
Cdd:PRK08376 246 AYPAAPSSISAMLLVIKQaglYALARVLFSIyGPAINLATvgwvIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGY 325

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 190 M-----TAIMVY-NPTMA-------------LLNLAIYILLTTTTFVMLMVDSSTTTLS-LSHMWNKMPLLTTAILTIML 249
Cdd:PRK08376 326 MllglgVGLAALgDPAMAsygeialaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNeLGGLARTMPKTTIAFLIGAA 405

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 250 SLGGLPPLSGFTPKWMIIQEMTKNDSMITpTIMAVMTLLNLYFYMRLTYSTSLTMfPSTNNMKVKwqfnnKKLTANLSPL 329
Cdd:PRK08376 406 AIVGLPPFNGFASKWLIYESSALFNPILG-VIAMIGSVLTLASFVKVFHTAFFGP-PSEKVMNVK-----EPPKPMLVPM 478


                 ....*...
gi 146289862 330 IILSTLIL 337
Cdd:PRK08376 479 LILAIAII 486
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 47-299 2.01e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 52.28  E-value: 2.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  47 KYNPRSMEASTKYFLTQATASMLLMLAIVI-----------NLTY-SGQWSMTKPLNSTASIIMTLAMAM---------K 105
Cdd:PRK12667 157 RDRGDAVEAAIKYALIGAVGTTLYFLALAFlyatfgtlnmaDLSAkIRGLSFPLTGGLAGNPPLALGVALalalwaftiK 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 106 LGLAPFHFWVPEV-----------TQGVQLSSG-------LILLTWQKLAPMSILYQISPTInldllLLMSILSILVGGW 167
Cdd:PRK12667 237 AAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirfLYTIFGISPSLIDFRAALSPIL-----IILGAVSAIIGAL 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 168 GGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYI--------LLTTTTFVMLMVDSSTTTLSLSHMWNKMPL 239
Cdd:PRK12667 312 MMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksLLFLASGVFIHAAGTRDIDELAGLGRKMPI 391

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 240 LTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTYS 299
Cdd:PRK12667 392 ASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
PRK12650 PRK12650
DUF4040 family protein;
93-263 9.81e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.43  E-value: 9.81e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  93 TASIIMTLAMA--MKLGLAPFHFWVPEVTQGVQLSSGLILLTWQKLAPMSILYQISP-----TINLDLLLLMSILSILVG 165
Cdd:PRK12650 207 TTVVAVLIAVAafTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPvfhdvAVWNWLLIIVGMITALMG 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 166 GWGGLNQTQLRKILAYSSIAHMGWMTA-IMVYNP---TMALLNLAIYILLTTTTFVML-MVDSSTTTLS---LSHMWNKM 237
Cdd:PRK12650 287 AVFAVQKTDLKKLTAYSTVSQLGWIVAtIGVGTPfalTAAVVHTLAHALFKSSLFMLIgVVDHQAGTRDirrLGSLWRRM 366

                        170       180
                 ....*....|....*....|....*.
gi 146289862 238 PLLTTAILTIMLSLGGLPPLSGFTPK 263
Cdd:PRK12650 367 PFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
33-337 1.40e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 49.95  E-value: 1.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  33 FEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLTYSGQWSM------------TKPLnSTASIIMTL 100
Cdd:PRK12663 137 FEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMahiamrlndmgdTATL-TTIALLFLL 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 101 AMAMKLGLAPFhFWVPEV--TQGVQLSSGLI-LLT----WQKLAPMSILYQISPTINLDLLLLMSILSILVGGWGGLNQT 173
Cdd:PRK12663 216 AFGMKAALFPF-MWLPAAyhTPNTEVAALFAaLLTkvgiYALIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYK 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 174 QLRKILAYSSIAHMGWMTAIMVYNpTMALLNLAIY-----ILLTTTTF----VMLMVDSSTTTLSLSHMWNKMPLLTTAI 244
Cdd:PRK12663 295 DIRRIAGYQVISSIGFILLGLALG-TPAGINGAIFylvhdMVVKTALFliagSLVRLTGYRSLQYLGGLYRKEPLFGALF 373

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 245 LTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRLTystsLTMFPSTNNMKVKWQfnNKKLTA 324
Cdd:PRK12663 374 LILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIF----FLAYWGDKDGEEVNF--KPIPLY 447

                        330
                 ....*....|...
gi 146289862 325 NLSPLIILSTLIL 337
Cdd:PRK12663 448 RKLPLSILAVVVI 460
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 62-263 1.43e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.92  E-value: 1.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  62 TQA----TASMLLMLA-IVINLTYSGQWSMTKPLNS-------TASIIMTLAMAM-KLGLAPFHFWVPE----------- 117
Cdd:PRK12644 160 LQAllvtTAGGLAMLVgIIILGQAAGTYRLSELLADpptgpavSVAVVLILVGALsKSAIVPFHFWLPGamaaptpvsay 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 118 ------VTQGVQLSSglilltwqKLAPM-SILYQISPTInldllLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK12644 240 lhaaamVKAGIYLVA--------RLAPGfADVPVWRPTV-----LVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFL 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 191 TAIMVY-NPTMALLNLAIYI---LLTTTTF-VMLMVDSSTTTLS---LSHMWNKMPLLT-TAILTIMlSLGGLPPLSGFT 261
Cdd:PRK12644 307 TVLVGIgTRDAALAGLAMLLahaLFKAALFlVVGIIDHSTGTRDirkLSGLGRRQPVLAvVAALAAA-SMAGLPPLLGFV 385


                 ..
gi 146289862 262 PK 263
Cdd:PRK12644 386 AK 387
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 175-296 7.04e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.34  E-value: 7.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 175 LRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYIL---LTTTTFVMLMVDSS-----TTTLSLSHMWNKMPLLTTAILT 246
Cdd:PRK12662 303 IKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsIVKSALFMVSGSISyhfgtTKLEDCLNLWKSMPKITLAFVL 382

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 146289862 247 IMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMAVMTLLNLYFYMRL 296
Cdd:PRK12662 383 LSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 164-263 8.01e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.52  E-value: 8.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 164 VGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNLAIYIL---LTTTTFVML--MVDSSTTTLSLSHM---WN 235
Cdd:PRK12647 272 TGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVahsLYKGALFMVagIIDHETGTRDITKLgglRR 351

                         90       100
                 ....*....|....*....|....*...
gi 146289862 236 KMPLLTTAILTIMLSLGGLPPLSGFTPK 263
Cdd:PRK12647 352 AMPITAAAALLAALSMAGLPPLFGFLAK 379
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 60-290 1.40e-04

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 43.75  E-value: 1.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  60 FLTQATASMLLMLAIVINLTYSG--------QWSMTKPLNSTASIIMTLAM----AMKLGLAPFHFWVPEVTQG------ 121
Cdd:PRK07390 177 FLTKRVGDLLLLMGVVALSPLAGtlnfsdlaAWAATANLDPLTATLLGLALiagpTGKCAQFPLHLWLDEAMEGpnpasi 256

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 122 ----VQLSSGLILLTwqKLAPmsiLYQISPTINLDLLLLMSilsilVGGWGG----LNQTQLRKILAYSSIAHMGWM-TA 192
Cdd:PRK07390 257 lrnsVVVATGAWVLI--KLQP---VLALSPVALTVLIVIGT-----VTAIGAslvaIAQIDIKRALSYSTSAYLGLVfIA 326

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 193 IMVYNPTMALLNLAIYILLTTTTFVML-MVDSSTTTLSLSHM---WNKMPLLTTAILTIMLSLGGLPPLSGFtpkWMIIQ 268
Cdd:PRK07390 327 VGLQQPDIALLLLLTHAIAKALLFMSVgSIILTTITQDLTELgglWSRMPATTLAFLVGSAGLVALLPLGGF---WALLR 403

                        250       260
                 ....*....|....*....|..
gi 146289862 269 eMTKNDSMITPTIMAVMTLLNL 290
Cdd:PRK07390 404 -LADGLWAVSPWLVGVLLLVNA 424
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-267 8.75e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.06  E-value: 8.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 100 LAMAMKLGLAPFHFWVPE------VTQGVQLSS--------GLILLTW-------QKLAPMSILYQISPTInldllllms 158
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKahveapVAGSVLLAGillklggyGLVRLSWpilplgaQNLAPAVIAMGIVGIV--------- 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 159 ilsilVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYNPTMALLNlAIYILLTTTTFVMLMVDSSTTTLSLSH------ 232
Cdd:MTH00226 309 -----YGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTG-SIFIMLAHGIVSSLLFILVTILYDRHHtrliky 382

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 146289862 233 ---MWNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMII 267
Cdd:MTH00226 383 yrgLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSI 420
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 49-268 1.18e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 40.52  E-value: 1.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  49 NPRSMEASTKYFLTQATASMLLMLAIVINLTySGQWSMTK----PLNSTASIIMTLAMAMKLGLAPFHFWVPEVTQGVQL 124
Cdd:MTH00207 133 NPKSLGAGMITALTNRIGDVMLLLSIGWTLN-QGHWSITNmwqtDMNNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTP 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 125 SSGLILLTWQKLAPMSILYQISPTINLD-----LLLLMSILSILVGGWGGLNQTQLRKILAYSSIAHMGWMTAIMVYN-P 198
Cdd:MTH00207 212 VSALVHSSTLVTAGVFLLIRFYPFLSSTywfnpALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmP 291

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 146289862 199 TMALLNLAIYILLTTTTFVML--MVDSSTTTLSLSHM---WNKMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQ 268
Cdd:MTH00207 292 KLALFHLITHALFKALLFVCAgsLIHSHHHSQDLRTMgnlTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 172-288 1.53e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 40.34  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 172 QTQLRKILAYSSIAHMGWM---TAIMVYNPTMALLNLAIYIL----------LTTTTFVMlmvdsSTTTLSL---SHMWN 235
Cdd:PRK06525 293 QQDMKRLLAYSTITQLGYMffgLSLAILGSRLALEGSIAYIFnhafakslffLVAGALSY-----SCGTRLLprlRGVLK 367

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 146289862 236 KMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEmTKNDSMITPTIMAVMTLL 288
Cdd:PRK06525 368 KLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAA-GFELSVEYWILLPAMVLL 419
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-255 2.49e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 39.65  E-value: 2.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 100 LAMAMKLGLAPFHFWVPE-----------VTQGVQLS---SGLILLTWQKLAPMSILYqiSPTInldllLLMSILSILVG 165
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKlggYGFIRFSWPLLPEASEYF--SPLI-----QTLSLLAIIYG 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 166 GWGGLNQTQLRKILAYSSIAHMGWMTaIMVYNPTMALLNLAIYILL-----TTTTF--VMLMVDSSTTTLSLSH--MWNK 236
Cdd:MTH00217 287 SLTTCRQVDLKRIIAYSSVAHMGLVT-LGIFSHTIQGLVAAIFLMLahglvSSALFiaVTFLYERHHTRLIKYYrgMVIT 365

                        170
                 ....*....|....*....
gi 146289862 237 MPLLTTAILTIMLSLGGLP 255
Cdd:MTH00217 366 MPLFGILMLLLVLANASIP 384
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 164-291 3.53e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 39.18  E-value: 3.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 164 VGGWGGLNQTQLRKILAYSSIAHMGWMT-AIMVYNP---TMALLNLAIYILLTTTTF-VMLMVDSSTTTLSLSHMWN--- 235
Cdd:PRK12665 286 VGILGAIAQSDIKRLLSFTLVSHIGYMVfGIALSTVaglSGAIYYVAHHITVQTTLFlVVGLIERQAGSSSLRRLGGlak 365

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 146289862 236 KMPLLTTAILTIMLSLGGLPPLSGFTPKWMIIQEMTKNDSMITPTIMA---VMTLLNLY 291
Cdd:PRK12665 366 ASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWLAWALVAggvVTSLLTLY 424
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 170-298 5.42e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 38.47  E-value: 5.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 170 LNQTQLRKILAYSSIAHMGWMTAIMVYN-PTMALLNLAIYILLTTTTF-----VMLMVDSSTTTLSLSHMWNKMPLLTTA 243
Cdd:MTH00209 258 NVESDLKKIIALSTLSQLGLMMCSLGLNqPELAFFHLITHALFKALLFicagnIIHSHGHSQDIRMVGNLWYQMPITSIC 337

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 146289862 244 ILTIMLSLGGLPPLSGFTPKWMIIQEMTKND-SMITPTIMAVMTLLNLYFYMRLTY 298
Cdd:MTH00209 338 LNIANLSLCGIPFLAGFYSKDLILESMLESNmPIMTLILMFLSTSLTAAYSMRLSY 393
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
50-268 7.29e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 38.34  E-value: 7.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  50 PRSMEASTKYFLTQATASMLLMLAIVINLTYSGQWSMT--KPLNSTASIIMTLAMAMKLGLAPFHFWVPE------VTQG 121
Cdd:PRK12668 139 KAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFGaiAGLGGTAAWLILIGFGVNAAFPPLHAWLPDaypeatVTGS 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 122 VQLS---------------SGLILLTWQKLApMSIlyqisptinldllllmsilsilVGGWGGLNQTQLRKILAYSSIAH 186
Cdd:PRK12668 219 VFLSafttktavyalarafPGTELLIYIGAA-MAV----------------------YGVFFALLENDLRRLLSYHIVSQ 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 187 MGWM-------TAIMVyNPTMA-LLNLAIY--ILLTTTTFVMLMVDSSTTTlSLSHMWNKMPLltTAILTIM--LSLGGL 254
Cdd:PRK12668 276 VGYMvagigigTALAI-NGAVAhAFNHILYkgLLFMSAGAVLYRTGTEKLT-ELGGLYRSMPL--TALFCLVgaLSISAF 351

                        250
                 ....*....|....
gi 146289862 255 PPLSGFTPKWMIIQ 268
Cdd:PRK12668 352 PLFSGFVSKSMIIS 365
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-288 9.08e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 37.70  E-value: 9.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862  55 ASTKYFLTQATASMLLMLA----------IVINLTYSGQWSMTKPLNSTASIIMTLAMAMKLGLAPFHFWVPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAglalalsgdtFTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 118 ----VTQGVQLSSG---LILLTWQ-------KLAPMSILYQISPTInldllllmsilsilvggWGGLN---QTQLRKILA 180
Cdd:PRK12561 218 pvsmILAGVLLKMGgyaLIRFNVQmlpdahvYFAPALAILGVVNII-----------------YGALNafaQDNVKRRLA 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289862 181 YSSIAHMGW-MTAIMVYNP---TMALLNLAIYILLTTTTFVMLMVD-SSTTTLSLSHMWN---KMPlLTTAILTI--MLS 250
Cdd:PRK12561 281 YSSVSHMGFvLLGIAAFTDlgiSGAMLQMISHGLIAAALFFLTGVTyERTHTLSIPNMGGlakVMP-KTFALFTAssMAS 359

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 146289862 251 LgGLPPLSGFTPKWMIIQEMTKNDSMiTPTIMAVMTLL 288
Cdd:PRK12561 360 L-ALPGMSGFVSELTVFLGITSSDVY-SSTFRTITILL 395
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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